These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5691#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [TNNGGGGGCNATNNACNGGNTNCNCNNANNTTNGAAGACTACAGGAGNNGGCGATNCCGGCGGGGNAANGGGTNGCATCGANCCGGCGGAGGGGCGAGTTCTTGANGNANGACNACCACCACCCTGGGGCAAGGGAGTATNCTAGGCGGCGGCAACGACGACTCGATCGGAAGGCTTCTCCACTGCTTCAGCCAGCCCTCTAACTCCGGCGTCGGCTTCGTTGACGCAGATCGGGAGGTGGCCATTGATGGGGATCGACAGCGGCGATGGCGCAATACTCAGGAAATTAGGAATGCGTCGATGGTGGTTGTTTGATTTCTCAAGAATGGGGCCATCGACCATGGCATCCAAAGCAGAGTCTTGCAAGTGTGGAGGACAGTGCCTAGACACCGCCCCATGAAGTNGCCCGCCCTGCAGGTCACGTGGGCACTCCGGCAAGGGC] [+] EMBL AU097094 [TNNGGGGGCNATNNACNGGNTNCNCNNANNTTNGAAGACTACAGGAGNNGGCGATNCCGGCGGGGNAANGGGTNGCATCGANCCGGCGGAGGGGCGAGTTCTTGANGNANGACNACCACCACCCTGGGGCAAGGGAGTATNCTAGGCGGCGGCAACGACGACTCGATCGGAAGGCTTCTCCACTGCTTCAGCCAGCCCTCTAACTCCGGCGTCGGCTTCGTTGACGCAGATCGGGAGGTGGCCATTGATGGGGATCGACAGCGGCGATGGCGCAATACTCAGGAAATTAGGAATGCGTCGATGGTGGTTGTTTGATTTCTCAAGAATGGGGCCATCGACCATGGCATCCAAAGCAGAGTCTTGCAAGTGTGGAGGACAGTGCCTAGACACCGCCCCATGAAGTNGCCCGCCCTGCAGGTCACGTGGGCACTCCGGCAAGGGC] consensusID : consensus_5691#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [CCGGACCCATCCACTTTTTTGACCCTATTTTTCTAGATCTACAGGAAGTGGCGATCCGGCGGAGGAACCGGTAGCATCGACCGCCGACGGGCGNAGTTCTTGATGACGACCACCACCACCCTGGGCAAGGGAGTATCCTAGGCGGCGGCAACGACGACTCGATCGGAAGGCTTCTCCACTGCTTCAGCCAGCCCTCTAACTCCGGCGTCGGCTTCGTTGACGCAGATCGGGAGGTGGCCATTGATGGGGATCGACAGCGGCGATGGCGCAATACTCAGGAAATTAGGAATGCGTCGATGGTGGTTGTTTGATTTCTCAAGAATGGGGCCATCGACCATGGCATCCAAAGCAGAGTTTNCAAGTTTTGAGGACAGTTC] [+] EMBL OSS2137A [CCGGACCCATCCACTTTTTTGACCCTATTTTTCTAGATCTACAGGAAGTGGCGATCCGGCGGAGGAACCGGTAGCATCGACCGCCGACGGGCGNAGTTCTTGATGACGACCACCACCACCCTGGGCAAGGGAGTATCCTAGGCGGCGGCAACGACGACTCGATCGGAAGGCTTCTCCACTGCTTCAGCCAGCCCTCTAACTCCGGCGTCGGCTTCGTTGACGCAGATCGGGAGGTGGCCATTGATGGGGATCGACAGCGGCGATGGCGCAATACTCAGGAAATTAGGAATGCGTCGATGGTGGTTGTTTGATTTCTCAAGAATGGGGCCATCGACCATGGCATCCAAAGCAGAGTTTNCAAGTTTTGAGGACAGTTC] consensusID : consensus_5691#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 198 fasta sequence [TCNGNNCNANGCNGTNNTTTGACCCTATTTTTCTAGATCTTCAGGAAGTGGCGATCCGGCGGCGGAACCNGTAGCATTGACCGCNGACGGGCGGAGTTCTTTATGNCGACCACCACCACCNTGGNTAAGGGAGTATCCTAGGTGGCGGCAACTACGGCTNGATCNGNAGGCTTCTTCACTGCTTCAGNCAGNCNTCTA] [+] EMBL OSS2002A [TCNGNNCNANGCNGTNNTTTGACCCTATTTTTCTAGATCTTCAGGAAGTGGCGATCCGGCGGCGGAACCNGTAGCATTGACCGCNGACGGGCGGAGTTCTTTATGNCGACCACCACCACCNTGGNTAAGGGAGTATCCTAGGTGGCGGCAACTACGGCTNGATCNGNAGGCTTCTTCACTGCTTCAGNCAGNCNTCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5691#0 TNNGGGGGCNATNNACNGGNTN--CNCNNANNTTNGAAGACTACAGGAGNNGGCGATNCC 58 consensus_5691#1 --CCGGACCCATCCACTTTTTTGACCCTATTTTTCTAGATCTACAGGAAGTGGCGATCC- 57 consensus_5691#2 --TCNGNNCNANGCNGTNNTTTGACCCTATTTTTCTAGATCTTCAGGAAGTGGCGATCC- 57 * * * * * * ** * ** ***** ****** * consensus_5691#0 GGCGGGGNAANGGGTNGCATCGANCCGGCGGAGGGGCGAGTTCTTGANGNANGACNACCA 118 consensus_5691#1 GGCGGAGGAACCGGTAGCATCGACC-GCCGACGGGCGNAGTTCTTGATGA-CGACCACCA 115 consensus_5691#2 GGCGGCGGAACCNGTAGCATTGACC-GCNGACGGGCGGAGTTCTTTATGN-CGACCACCA 115 ***** * ** ** **** ** * * * *** ******* * * *** **** consensus_5691#0 CCACCCTGGGGCAAGGGAGTATNCTAGGCGGCGGCAACGACGACTCGATCGGAAGGCTTC 178 consensus_5691#1 CCACCCTGGG-CAAGGGAGTATCCTAGGCGGCGGCAACGACGACTCGATCGGAAGGCTTC 174 consensus_5691#2 CCACCNTGGN-TAAGGGAGTATCCTAGGTGGCGGCAACTACGGCTNGATCNGNAGGCTTC 174 ***** *** ********** ***** ********* *** ** **** * ******* consensus_5691#0 TCCACTGCTTCAGCCAGCCCTCTAACTCCGGCGTCGGCTTCGTTGACGCAGATCGGGAGG 238 consensus_5691#1 TCCACTGCTTCAGCCAGCCCTCTAACTCCGGCGTCGGCTTCGTTGACGCAGATCGGGAGG 234 consensus_5691#2 TTCACTGCTTCAGNCAGNCNTCTA------------------------------------ 198 * *********** *** * **** consensus_5691#0 TGGCCATTGATGGGGATCGACAGCGGCGATGGCGCAATACTCAGGAAATTAGGAATGCGT 298 consensus_5691#1 TGGCCATTGATGGGGATCGACAGCGGCGATGGCGCAATACTCAGGAAATTAGGAATGCGT 294 consensus_5691#2 ------------------------------------------------------------ consensus_5691#0 CGATGGTGGTTGTTTGATTTCTCAAGAATGGGGCCATCGACCATGGCATCCAAAGCAGAG 358 consensus_5691#1 CGATGGTGGTTGTTTGATTTCTCAAGAATGGGGCCATCGACCATGGCATCCAAAGCAGAG 354 consensus_5691#2 ------------------------------------------------------------ consensus_5691#0 TCTTGCAAGTGTGGAGGACAGTGCCTAGACACCGCCCCATGAAGTNGCCCGCCCTGCAGG 418 consensus_5691#1 T-TTNCAAGTTTTGAGGACAGTTC------------------------------------ 377 consensus_5691#2 ------------------------------------------------------------ consensus_5691#0 TCACGTGGGCACTCCGGCAAGGGC 442 consensus_5691#1 ------------------------ consensus_5691#2 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||