cluster # 5691

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Oryza sativa
cluster # 5691 cluster # 5691 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5691#0 length = 442 sequences # 1

consensus_5691#1 length = 377 sequences # 1
consensus_5691#2 length = 198 sequences # 1

consensusID : consensus_5691#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [TNNGGGGGCNATNNACNGGNTNCNCNNANNTTNGAAGACTACAGGAGNNGGCGATNCCGGCGGGGNAANGGGTNGCATCGANCCGGCGGAGGGGCGAGTTCTTGANGNANGACNACCACCACCCTGGGGCAAGGGAGTATNCTAGGCGGCGGCAACGACGACTCGATCGGAAGGCTTCTCCACTGCTTCAGCCAGCCCTCTAACTCCGGCGTCGGCTTCGTTGACGCAGATCGGGAGGTGGCCATTGATGGGGATCGACAGCGGCGATGGCGCAATACTCAGGAAATTAGGAATGCGTCGATGGTGGTTGTTTGATTTCTCAAGAATGGGGCCATCGACCATGGCATCCAAAGCAGAGTCTTGCAAGTGTGGAGGACAGTGCCTAGACACCGCCCCATGAAGTNGCCCGCCCTGCAGGTCACGTGGGCACTCCGGCAAGGGC]

[+] EMBL AU097094             [TNNGGGGGCNATNNACNGGNTNCNCNNANNTTNGAAGACTACAGGAGNNGGCGATNCCGGCGGGGNAANGGGTNGCATCGANCCGGCGGAGGGGCGAGTTCTTGANGNANGACNACCACCACCCTGGGGCAAGGGAGTATNCTAGGCGGCGGCAACGACGACTCGATCGGAAGGCTTCTCCACTGCTTCAGCCAGCCCTCTAACTCCGGCGTCGGCTTCGTTGACGCAGATCGGGAGGTGGCCATTGATGGGGATCGACAGCGGCGATGGCGCAATACTCAGGAAATTAGGAATGCGTCGATGGTGGTTGTTTGATTTCTCAAGAATGGGGCCATCGACCATGGCATCCAAAGCAGAGTCTTGCAAGTGTGGAGGACAGTGCCTAGACACCGCCCCATGAAGTNGCCCGCCCTGCAGGTCACGTGGGCACTCCGGCAAGGGC]




>consensus_5691#0
TNNGGGGGCNATNNACNGGNTNCNCNNANNTTNGAAGACTACAGGAGNNGGCGATNCCGG
CGGGGNAANGGGTNGCATCGANCCGGCGGAGGGGCGAGTTCTTGANGNANGACNACCACC
ACCCTGGGGCAAGGGAGTATNCTAGGCGGCGGCAACGACGACTCGATCGGAAGGCTTCTC
CACTGCTTCAGCCAGCCCTCTAACTCCGGCGTCGGCTTCGTTGACGCAGATCGGGAGGTG
GCCATTGATGGGGATCGACAGCGGCGATGGCGCAATACTCAGGAAATTAGGAATGCGTCG
ATGGTGGTTGTTTGATTTCTCAAGAATGGGGCCATCGACCATGGCATCCAAAGCAGAGTC
TTGCAAGTGTGGAGGACAGTGCCTAGACACCGCCCCATGAAGTNGCCCGCCCTGCAGGTC
ACGTGGGCACTCCGGCAAGGGC

consensusID : consensus_5691#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence

                              [CCGGACCCATCCACTTTTTTGACCCTATTTTTCTAGATCTACAGGAAGTGGCGATCCGGCGGAGGAACCGGTAGCATCGACCGCCGACGGGCGNAGTTCTTGATGACGACCACCACCACCCTGGGCAAGGGAGTATCCTAGGCGGCGGCAACGACGACTCGATCGGAAGGCTTCTCCACTGCTTCAGCCAGCCCTCTAACTCCGGCGTCGGCTTCGTTGACGCAGATCGGGAGGTGGCCATTGATGGGGATCGACAGCGGCGATGGCGCAATACTCAGGAAATTAGGAATGCGTCGATGGTGGTTGTTTGATTTCTCAAGAATGGGGCCATCGACCATGGCATCCAAAGCAGAGTTTNCAAGTTTTGAGGACAGTTC]

[+] EMBL OSS2137A             [CCGGACCCATCCACTTTTTTGACCCTATTTTTCTAGATCTACAGGAAGTGGCGATCCGGCGGAGGAACCGGTAGCATCGACCGCCGACGGGCGNAGTTCTTGATGACGACCACCACCACCCTGGGCAAGGGAGTATCCTAGGCGGCGGCAACGACGACTCGATCGGAAGGCTTCTCCACTGCTTCAGCCAGCCCTCTAACTCCGGCGTCGGCTTCGTTGACGCAGATCGGGAGGTGGCCATTGATGGGGATCGACAGCGGCGATGGCGCAATACTCAGGAAATTAGGAATGCGTCGATGGTGGTTGTTTGATTTCTCAAGAATGGGGCCATCGACCATGGCATCCAAAGCAGAGTTTNCAAGTTTTGAGGACAGTTC]




>consensus_5691#1
CCGGACCCATCCACTTTTTTGACCCTATTTTTCTAGATCTACAGGAAGTGGCGATCCGGC
GGAGGAACCGGTAGCATCGACCGCCGACGGGCGNAGTTCTTGATGACGACCACCACCACC
CTGGGCAAGGGAGTATCCTAGGCGGCGGCAACGACGACTCGATCGGAAGGCTTCTCCACT
GCTTCAGCCAGCCCTCTAACTCCGGCGTCGGCTTCGTTGACGCAGATCGGGAGGTGGCCA
TTGATGGGGATCGACAGCGGCGATGGCGCAATACTCAGGAAATTAGGAATGCGTCGATGG
TGGTTGTTTGATTTCTCAAGAATGGGGCCATCGACCATGGCATCCAAAGCAGAGTTTNCA
AGTTTTGAGGACAGTTC

consensusID : consensus_5691#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 198
fasta sequence

                              [TCNGNNCNANGCNGTNNTTTGACCCTATTTTTCTAGATCTTCAGGAAGTGGCGATCCGGCGGCGGAACCNGTAGCATTGACCGCNGACGGGCGGAGTTCTTTATGNCGACCACCACCACCNTGGNTAAGGGAGTATCCTAGGTGGCGGCAACTACGGCTNGATCNGNAGGCTTCTTCACTGCTTCAGNCAGNCNTCTA]

[+] EMBL OSS2002A             [TCNGNNCNANGCNGTNNTTTGACCCTATTTTTCTAGATCTTCAGGAAGTGGCGATCCGGCGGCGGAACCNGTAGCATTGACCGCNGACGGGCGGAGTTCTTTATGNCGACCACCACCACCNTGGNTAAGGGAGTATCCTAGGTGGCGGCAACTACGGCTNGATCNGNAGGCTTCTTCACTGCTTCAGNCAGNCNTCTA]




>consensus_5691#2
TCNGNNCNANGCNGTNNTTTGACCCTATTTTTCTAGATCTTCAGGAAGTGGCGATCCGGC
GGCGGAACCNGTAGCATTGACCGCNGACGGGCGGAGTTCTTTATGNCGACCACCACCACC
NTGGNTAAGGGAGTATCCTAGGTGGCGGCAACTACGGCTNGATCNGNAGGCTTCTTCACT
GCTTCAGNCAGNCNTCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5691#0      TNNGGGGGCNATNNACNGGNTN--CNCNNANNTTNGAAGACTACAGGAGNNGGCGATNCC 58
consensus_5691#1      --CCGGACCCATCCACTTTTTTGACCCTATTTTTCTAGATCTACAGGAAGTGGCGATCC- 57
consensus_5691#2      --TCNGNNCNANGCNGTNNTTTGACCCTATTTTTCTAGATCTTCAGGAAGTGGCGATCC- 57
                           *  * *         *   * *     **  *   ** *****   ****** * 

consensus_5691#0      GGCGGGGNAANGGGTNGCATCGANCCGGCGGAGGGGCGAGTTCTTGANGNANGACNACCA 118
consensus_5691#1      GGCGGAGGAACCGGTAGCATCGACC-GCCGACGGGCGNAGTTCTTGATGA-CGACCACCA 115
consensus_5691#2      GGCGGCGGAACCNGTAGCATTGACC-GCNGACGGGCGGAGTTCTTTATGN-CGACCACCA 115
                      ***** * **   ** **** ** * *  *  ***   ******* * *   *** ****

consensus_5691#0      CCACCCTGGGGCAAGGGAGTATNCTAGGCGGCGGCAACGACGACTCGATCGGAAGGCTTC 178
consensus_5691#1      CCACCCTGGG-CAAGGGAGTATCCTAGGCGGCGGCAACGACGACTCGATCGGAAGGCTTC 174
consensus_5691#2      CCACCNTGGN-TAAGGGAGTATCCTAGGTGGCGGCAACTACGGCTNGATCNGNAGGCTTC 174
                      ***** ***   ********** ***** ********* *** ** **** * *******

consensus_5691#0      TCCACTGCTTCAGCCAGCCCTCTAACTCCGGCGTCGGCTTCGTTGACGCAGATCGGGAGG 238
consensus_5691#1      TCCACTGCTTCAGCCAGCCCTCTAACTCCGGCGTCGGCTTCGTTGACGCAGATCGGGAGG 234
consensus_5691#2      TTCACTGCTTCAGNCAGNCNTCTA------------------------------------ 198
                      * *********** *** * ****                                    

consensus_5691#0      TGGCCATTGATGGGGATCGACAGCGGCGATGGCGCAATACTCAGGAAATTAGGAATGCGT 298
consensus_5691#1      TGGCCATTGATGGGGATCGACAGCGGCGATGGCGCAATACTCAGGAAATTAGGAATGCGT 294
consensus_5691#2      ------------------------------------------------------------
                                                                                  

consensus_5691#0      CGATGGTGGTTGTTTGATTTCTCAAGAATGGGGCCATCGACCATGGCATCCAAAGCAGAG 358
consensus_5691#1      CGATGGTGGTTGTTTGATTTCTCAAGAATGGGGCCATCGACCATGGCATCCAAAGCAGAG 354
consensus_5691#2      ------------------------------------------------------------
                                                                                  

consensus_5691#0      TCTTGCAAGTGTGGAGGACAGTGCCTAGACACCGCCCCATGAAGTNGCCCGCCCTGCAGG 418
consensus_5691#1      T-TTNCAAGTTTTGAGGACAGTTC------------------------------------ 377
consensus_5691#2      ------------------------------------------------------------
                                                                                  

consensus_5691#0      TCACGTGGGCACTCCGGCAAGGGC 442
consensus_5691#1      ------------------------
consensus_5691#2      ------------------------