Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5691 cluster # 5691       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5691#0 length = 442 sequences # 1  
consensus_5691#1 length = 377 sequences # 1  
consensus_5691#2 length = 198 sequences # 1  

consensusID : consensus_5691#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence
                              [TNNGGGGGCNATNNACNGGNTNCNCNNANNTTNGAAGACTACAGGAGNNGGCGATNCCGGCGGGGNAANGGGTNGCATCGANCCGGCGGAGGGGCGAGTTCTTGANGNANGACNACCACCACCCTGGGGCAAGGGAGTATNCTAGGCGGCGGCAACGACGACTCGATCGGAAGGCTTCTCCACTGCTTCAGCCAGCCCTCTAACTCCGGCGTCGGCTTCGTTGACGCAGATCGGGAGGTGGCCATTGATGGGGATCGACAGCGGCGATGGCGCAATACTCAGGAAATTAGGAATGCGTCGATGGTGGTTGTTTGATTTCTCAAGAATGGGGCCATCGACCATGGCATCCAAAGCAGAGTCTTGCAAGTGTGGAGGACAGTGCCTAGACACCGCCCCATGAAGTNGCCCGCCCTGCAGGTCACGTGGGCACTCCGGCAAGGGC]

[+] EMBL AU097094             [TNNGGGGGCNATNNACNGGNTNCNCNNANNTTNGAAGACTACAGGAGNNGGCGATNCCGGCGGGGNAANGGGTNGCATCGANCCGGCGGAGGGGCGAGTTCTTGANGNANGACNACCACCACCCTGGGGCAAGGGAGTATNCTAGGCGGCGGCAACGACGACTCGATCGGAAGGCTTCTCCACTGCTTCAGCCAGCCCTCTAACTCCGGCGTCGGCTTCGTTGACGCAGATCGGGAGGTGGCCATTGATGGGGATCGACAGCGGCGATGGCGCAATACTCAGGAAATTAGGAATGCGTCGATGGTGGTTGTTTGATTTCTCAAGAATGGGGCCATCGACCATGGCATCCAAAGCAGAGTCTTGCAAGTGTGGAGGACAGTGCCTAGACACCGCCCCATGAAGTNGCCCGCCCTGCAGGTCACGTGGGCACTCCGGCAAGGGC]


>consensus_5691#0 TNNGGGGGCNATNNACNGGNTNCNCNNANNTTNGAAGACTACAGGAGNNGGCGATNCCGG CGGGGNAANGGGTNGCATCGANCCGGCGGAGGGGCGAGTTCTTGANGNANGACNACCACC ACCCTGGGGCAAGGGAGTATNCTAGGCGGCGGCAACGACGACTCGATCGGAAGGCTTCTC CACTGCTTCAGCCAGCCCTCTAACTCCGGCGTCGGCTTCGTTGACGCAGATCGGGAGGTG GCCATTGATGGGGATCGACAGCGGCGATGGCGCAATACTCAGGAAATTAGGAATGCGTCG ATGGTGGTTGTTTGATTTCTCAAGAATGGGGCCATCGACCATGGCATCCAAAGCAGAGTC TTGCAAGTGTGGAGGACAGTGCCTAGACACCGCCCCATGAAGTNGCCCGCCCTGCAGGTC ACGTGGGCACTCCGGCAAGGGC



consensusID : consensus_5691#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence
                              [CCGGACCCATCCACTTTTTTGACCCTATTTTTCTAGATCTACAGGAAGTGGCGATCCGGCGGAGGAACCGGTAGCATCGACCGCCGACGGGCGNAGTTCTTGATGACGACCACCACCACCCTGGGCAAGGGAGTATCCTAGGCGGCGGCAACGACGACTCGATCGGAAGGCTTCTCCACTGCTTCAGCCAGCCCTCTAACTCCGGCGTCGGCTTCGTTGACGCAGATCGGGAGGTGGCCATTGATGGGGATCGACAGCGGCGATGGCGCAATACTCAGGAAATTAGGAATGCGTCGATGGTGGTTGTTTGATTTCTCAAGAATGGGGCCATCGACCATGGCATCCAAAGCAGAGTTTNCAAGTTTTGAGGACAGTTC]

[+] EMBL OSS2137A             [CCGGACCCATCCACTTTTTTGACCCTATTTTTCTAGATCTACAGGAAGTGGCGATCCGGCGGAGGAACCGGTAGCATCGACCGCCGACGGGCGNAGTTCTTGATGACGACCACCACCACCCTGGGCAAGGGAGTATCCTAGGCGGCGGCAACGACGACTCGATCGGAAGGCTTCTCCACTGCTTCAGCCAGCCCTCTAACTCCGGCGTCGGCTTCGTTGACGCAGATCGGGAGGTGGCCATTGATGGGGATCGACAGCGGCGATGGCGCAATACTCAGGAAATTAGGAATGCGTCGATGGTGGTTGTTTGATTTCTCAAGAATGGGGCCATCGACCATGGCATCCAAAGCAGAGTTTNCAAGTTTTGAGGACAGTTC]


>consensus_5691#1 CCGGACCCATCCACTTTTTTGACCCTATTTTTCTAGATCTACAGGAAGTGGCGATCCGGC GGAGGAACCGGTAGCATCGACCGCCGACGGGCGNAGTTCTTGATGACGACCACCACCACC CTGGGCAAGGGAGTATCCTAGGCGGCGGCAACGACGACTCGATCGGAAGGCTTCTCCACT GCTTCAGCCAGCCCTCTAACTCCGGCGTCGGCTTCGTTGACGCAGATCGGGAGGTGGCCA TTGATGGGGATCGACAGCGGCGATGGCGCAATACTCAGGAAATTAGGAATGCGTCGATGG TGGTTGTTTGATTTCTCAAGAATGGGGCCATCGACCATGGCATCCAAAGCAGAGTTTNCA AGTTTTGAGGACAGTTC



consensusID : consensus_5691#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 198
fasta sequence
                              [TCNGNNCNANGCNGTNNTTTGACCCTATTTTTCTAGATCTTCAGGAAGTGGCGATCCGGCGGCGGAACCNGTAGCATTGACCGCNGACGGGCGGAGTTCTTTATGNCGACCACCACCACCNTGGNTAAGGGAGTATCCTAGGTGGCGGCAACTACGGCTNGATCNGNAGGCTTCTTCACTGCTTCAGNCAGNCNTCTA]

[+] EMBL OSS2002A             [TCNGNNCNANGCNGTNNTTTGACCCTATTTTTCTAGATCTTCAGGAAGTGGCGATCCGGCGGCGGAACCNGTAGCATTGACCGCNGACGGGCGGAGTTCTTTATGNCGACCACCACCACCNTGGNTAAGGGAGTATCCTAGGTGGCGGCAACTACGGCTNGATCNGNAGGCTTCTTCACTGCTTCAGNCAGNCNTCTA]


>consensus_5691#2 TCNGNNCNANGCNGTNNTTTGACCCTATTTTTCTAGATCTTCAGGAAGTGGCGATCCGGC GGCGGAACCNGTAGCATTGACCGCNGACGGGCGGAGTTCTTTATGNCGACCACCACCACC NTGGNTAAGGGAGTATCCTAGGTGGCGGCAACTACGGCTNGATCNGNAGGCTTCTTCACT GCTTCAGNCAGNCNTCTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5691#0      TNNGGGGGCNATNNACNGGNTN--CNCNNANNTTNGAAGACTACAGGAGNNGGCGATNCC 58
consensus_5691#1      --CCGGACCCATCCACTTTTTTGACCCTATTTTTCTAGATCTACAGGAAGTGGCGATCC- 57
consensus_5691#2      --TCNGNNCNANGCNGTNNTTTGACCCTATTTTTCTAGATCTTCAGGAAGTGGCGATCC- 57
                           *  * *         *   * *     **  *   ** *****   ****** * 

consensus_5691#0      GGCGGGGNAANGGGTNGCATCGANCCGGCGGAGGGGCGAGTTCTTGANGNANGACNACCA 118
consensus_5691#1      GGCGGAGGAACCGGTAGCATCGACC-GCCGACGGGCGNAGTTCTTGATGA-CGACCACCA 115
consensus_5691#2      GGCGGCGGAACCNGTAGCATTGACC-GCNGACGGGCGGAGTTCTTTATGN-CGACCACCA 115
                      ***** * **   ** **** ** * *  *  ***   ******* * *   *** ****

consensus_5691#0      CCACCCTGGGGCAAGGGAGTATNCTAGGCGGCGGCAACGACGACTCGATCGGAAGGCTTC 178
consensus_5691#1      CCACCCTGGG-CAAGGGAGTATCCTAGGCGGCGGCAACGACGACTCGATCGGAAGGCTTC 174
consensus_5691#2      CCACCNTGGN-TAAGGGAGTATCCTAGGTGGCGGCAACTACGGCTNGATCNGNAGGCTTC 174
                      ***** ***   ********** ***** ********* *** ** **** * *******

consensus_5691#0      TCCACTGCTTCAGCCAGCCCTCTAACTCCGGCGTCGGCTTCGTTGACGCAGATCGGGAGG 238
consensus_5691#1      TCCACTGCTTCAGCCAGCCCTCTAACTCCGGCGTCGGCTTCGTTGACGCAGATCGGGAGG 234
consensus_5691#2      TTCACTGCTTCAGNCAGNCNTCTA------------------------------------ 198
                      * *********** *** * ****                                    

consensus_5691#0      TGGCCATTGATGGGGATCGACAGCGGCGATGGCGCAATACTCAGGAAATTAGGAATGCGT 298
consensus_5691#1      TGGCCATTGATGGGGATCGACAGCGGCGATGGCGCAATACTCAGGAAATTAGGAATGCGT 294
consensus_5691#2      ------------------------------------------------------------
                                                                                  

consensus_5691#0      CGATGGTGGTTGTTTGATTTCTCAAGAATGGGGCCATCGACCATGGCATCCAAAGCAGAG 358
consensus_5691#1      CGATGGTGGTTGTTTGATTTCTCAAGAATGGGGCCATCGACCATGGCATCCAAAGCAGAG 354
consensus_5691#2      ------------------------------------------------------------
                                                                                  

consensus_5691#0      TCTTGCAAGTGTGGAGGACAGTGCCTAGACACCGCCCCATGAAGTNGCCCGCCCTGCAGG 418
consensus_5691#1      T-TTNCAAGTTTTGAGGACAGTTC------------------------------------ 377
consensus_5691#2      ------------------------------------------------------------
                                                                                  

consensus_5691#0      TCACGTGGGCACTCCGGCAAGGGC 442
consensus_5691#1      ------------------------
consensus_5691#2      ------------------------
                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)