cluster # 5696

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Oryza sativa
cluster # 5696 cluster # 5696 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5696#0 length = 824 sequences # 1

consensus_5696#1 length = 652 sequences # 1
consensus_5696#2 length = 346 sequences # 1

consensusID : consensus_5696#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 824
fasta sequence

                              [TCTGTCTCTCTCGTTCTTGCAACGACGGCGTCGGGCGGTGCGGCGGCGGCGGCGGCGGCGTCTGCGGGTGCGCCGGGTGCAGCGGCGGCATGAAGCTGATCCCCACCGGCGCGCTCGGGCTTGCGGCGGCGGCGTTTGACGAAACGGTGGCGGCGTCTGCGGGTCCGTCGGTGGCGCTGAGGGGGCGGTGGCAGCGTAAAGCTGACTCCCCGCCGGCACCCGCTCGTGGAGGTAGAGGGCGGCGGCGGTGGGATCCGCGTCGGCGCCCAGCCGTGAAGGTAAGGAGCGGTGGCGGCGGGATCCGTGCCGGCGACCGGCCGTGAAGGGAGCGTAGGCGGCGCGGCGGCTCGCGGAGGAAGGGAGCGGCGGCGGCTCGCGGAGGAAGTGAGCGGTGGCGGCGGATCCCCAGCGGCGGCTGCGCGCAGTGGAGCTTATTGCAACTCGTTATCTTGCTTGATTCCAAATTAGACGCTGCAGAGCAGATGATTCACTCACGGATGACGGGGGAGATCGAGCAGTGCGGCGGCGAGATCGAGGCGGAGATCGAGCGGGCCAAGGAGGTCGTCGCCAACAAGGGCAGGGCGCTCGACGACGACCGCGAGAGGTTCCAGAAGGCCGCCGTCGCCGCGCTCAACATCCTCAGCGGCGGCGCCGCCGGCAGCATCTGATCTCATCTGACCATGGTGGCATGATATCTGATCAAACTAAACCTGAATGTTGCCATCCCTGATTGATTTACTCATGTAATCCTGATCTCCACTGTTCCAGTACTACTTGATAGTACTAGTAGTTGTTACCACTTACTAGTGTATAGGCAAAGTGCT]

[+] EMBL AK062802             [TCTGTCTCTCTCGTTCTTGCAACGACGGCGTCGGGCGGTGCGGCGGCGGCGGCGGCGGCGTCTGCGGGTGCGCCGGGTGCAGCGGCGGCATGAAGCTGATCCCCACCGGCGCGCTCGGGCTTGCGGCGGCGGCGTTTGACGAAACGGTGGCGGCGTCTGCGGGTCCGTCGGTGGCGCTGAGGGGGCGGTGGCAGCGTAAAGCTGACTCCCCGCCGGCACCCGCTCGTGGAGGTAGAGGGCGGCGGCGGTGGGATCCGCGTCGGCGCCCAGCCGTGAAGGTAAGGAGCGGTGGCGGCGGGATCCGTGCCGGCGACCGGCCGTGAAGGGAGCGTAGGCGGCGCGGCGGCTCGCGGAGGAAGGGAGCGGCGGCGGCTCGCGGAGGAAGTGAGCGGTGGCGGCGGATCCCCAGCGGCGGCTGCGCGCAGTGGAGCTTATTGCAACTCGTTATCTTGCTTGATTCCAAATTAGACGCTGCAGAGCAGATGATTCACTCACGGATGACGGGGGAGATCGAGCAGTGCGGCGGCGAGATCGAGGCGGAGATCGAGCGGGCCAAGGAGGTCGTCGCCAACAAGGGCAGGGCGCTCGACGACGACCGCGAGAGGTTCCAGAAGGCCGCCGTCGCCGCGCTCAACATCCTCAGCGGCGGCGCCGCCGGCAGCATCTGATCTCATCTGACCATGGTGGCATGATATCTGATCAAACTAAACCTGAATGTTGCCATCCCTGATTGATTTACTCATGTAATCCTGATCTCCACTGTTCCAGTACTACTTGATAGTACTAGTAGTTGTTACCACTTACTAGTGTATAGGCAAAGTGCT]




>consensus_5696#0
TCTGTCTCTCTCGTTCTTGCAACGACGGCGTCGGGCGGTGCGGCGGCGGCGGCGGCGGCG
TCTGCGGGTGCGCCGGGTGCAGCGGCGGCATGAAGCTGATCCCCACCGGCGCGCTCGGGC
TTGCGGCGGCGGCGTTTGACGAAACGGTGGCGGCGTCTGCGGGTCCGTCGGTGGCGCTGA
GGGGGCGGTGGCAGCGTAAAGCTGACTCCCCGCCGGCACCCGCTCGTGGAGGTAGAGGGC
GGCGGCGGTGGGATCCGCGTCGGCGCCCAGCCGTGAAGGTAAGGAGCGGTGGCGGCGGGA
TCCGTGCCGGCGACCGGCCGTGAAGGGAGCGTAGGCGGCGCGGCGGCTCGCGGAGGAAGG
GAGCGGCGGCGGCTCGCGGAGGAAGTGAGCGGTGGCGGCGGATCCCCAGCGGCGGCTGCG
CGCAGTGGAGCTTATTGCAACTCGTTATCTTGCTTGATTCCAAATTAGACGCTGCAGAGC
AGATGATTCACTCACGGATGACGGGGGAGATCGAGCAGTGCGGCGGCGAGATCGAGGCGG
AGATCGAGCGGGCCAAGGAGGTCGTCGCCAACAAGGGCAGGGCGCTCGACGACGACCGCG
AGAGGTTCCAGAAGGCCGCCGTCGCCGCGCTCAACATCCTCAGCGGCGGCGCCGCCGGCA
GCATCTGATCTCATCTGACCATGGTGGCATGATATCTGATCAAACTAAACCTGAATGTTG
CCATCCCTGATTGATTTACTCATGTAATCCTGATCTCCACTGTTCCAGTACTACTTGATA
GTACTAGTAGTTGTTACCACTTACTAGTGTATAGGCAAAGTGCT

consensusID : consensus_5696#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 652
fasta sequence

                              [TGTGATTATTATTCTTAATTCCCAAAGTACCCTCACAACCCTATCCATCCAAACCCTATCCATTCGAACAACTCTCTGTCTCTCTCGTTCTTGCAACGACGGCGTCGGGCGGTGCGGCGGCGGCGGCGTTTGACGAAACGGTGGCGGCGTCTGCGGGTCCGTCGGTGGCGCTGAGGGGGCGGTGGCAGCGTAAAGCTGACTCCCCGCCGGCACCCGCTCGTGGAGGTAGAGGGCGGCGGCGGTGGGATCCGCGTCGGCGCCCAGCCGTGAAGGTAAGGAGCGGTGGCGGCGGGATCCGTGCCGGCGACCGGCCGTGAAGGGAGCGTAGGCGGCGCGGCGGCTCGCGGAGGAAGGGAGCGGCGGCGGCTCGCGGAGGAAGTGAGCGGTGGCGGCGGATCCCCAGCGGCGGCTGCGCGCAGTGGAGCTTATTGCAACTCGTTATCTTGCTTGATTCCAAATTAGACGCTGCAGAGCAGATGATTCACTCACGGATGACGGGGGAGATCGAGCAGTGCGGCGGCGAGATCGAGGCGGAGATCGAGCGGGCCAAGGAGGTCGTCGGGTGCAGCGGCGGCATGAAGCTGATCCCCACCGGCGCGCTCGGGCTTGCGGCGGCGGCGTTTGACGAAACGGTGGCATGATATCTGATCAA]

[-] EMBL AK063622             [TGTGATTATTATTCTTAATTCCCAAAGTACCCTCACAACCCTATCCATCCAAACCCTATCCATTCGAACAACTCTCTGTCTCTCTCGTTCTTGCAACGACGGCGTCGGGCGGTGCGGCGGCGGCGGCGTTTGACGAAACGGTGGCGGCGTCTGCGGGTCCGTCGGTGGCGCTGAGGGGGCGGTGGCAGCGTAAAGCTGACTCCCCGCCGGCACCCGCTCGTGGAGGTAGAGGGCGGCGGCGGTGGGATCCGCGTCGGCGCCCAGCCGTGAAGGTAAGGAGCGGTGGCGGCGGGATCCGTGCCGGCGACCGGCCGTGAAGGGAGCGTAGGCGGCGCGGCGGCTCGCGGAGGAAGGGAGCGGCGGCGGCTCGCGGAGGAAGTGAGCGGTGGCGGCGGATCCCCAGCGGCGGCTGCGCGCAGTGGAGCTTATTGCAACTCGTTATCTTGCTTGATTCCAAATTAGACGCTGCAGAGCAGATGATTCACTCACGGATGACGGGGGAGATCGAGCAGTGCGGCGGCGAGATCGAGGCGGAGATCGAGCGGGCCAAGGAGGTCGTCGGGTGCAGCGGCGGCATGAAGCTGATCCCCACCGGCGCGCTCGGGCTTGCGGCGGCGGCGTTTGACGAAACGGTGGCATGATATCTGATCAA]




>consensus_5696#1
TGTGATTATTATTCTTAATTCCCAAAGTACCCTCACAACCCTATCCATCCAAACCCTATC
CATTCGAACAACTCTCTGTCTCTCTCGTTCTTGCAACGACGGCGTCGGGCGGTGCGGCGG
CGGCGGCGTTTGACGAAACGGTGGCGGCGTCTGCGGGTCCGTCGGTGGCGCTGAGGGGGC
GGTGGCAGCGTAAAGCTGACTCCCCGCCGGCACCCGCTCGTGGAGGTAGAGGGCGGCGGC
GGTGGGATCCGCGTCGGCGCCCAGCCGTGAAGGTAAGGAGCGGTGGCGGCGGGATCCGTG
CCGGCGACCGGCCGTGAAGGGAGCGTAGGCGGCGCGGCGGCTCGCGGAGGAAGGGAGCGG
CGGCGGCTCGCGGAGGAAGTGAGCGGTGGCGGCGGATCCCCAGCGGCGGCTGCGCGCAGT
GGAGCTTATTGCAACTCGTTATCTTGCTTGATTCCAAATTAGACGCTGCAGAGCAGATGA
TTCACTCACGGATGACGGGGGAGATCGAGCAGTGCGGCGGCGAGATCGAGGCGGAGATCG
AGCGGGCCAAGGAGGTCGTCGGGTGCAGCGGCGGCATGAAGCTGATCCCCACCGGCGCGC
TCGGGCTTGCGGCGGCGGCGTTTGACGAAACGGTGGCATGATATCTGATCAA

consensusID : consensus_5696#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 346
fasta sequence

                              [GCACTCGCCGTCGGGATCGGTCGCGGCGGCGGCGGCGGGAGAGGAGGAGGGGGCCATGGTGGAGGCGGCGGCGGAGGACGGCGGCGCCGAGTCCAGGATCACCGCGCTCCTCTTCGACGTGTCGCAGCAGGTGCAGGAGGCCCTGCAGGGGATGCTGAAGATGACGGGGGAGATCGAGCAGTGCGGCGCCGAGATCNAGGCGGAGATCGAGCGGGCCAAGGAGGCCGTCGCCGACAAGGGCAGGGCGCTCGACGACGACCGCGAGAGGTTCCAGAAGGCCGCCGTCGCCGCGCTCAACATCCTCAGCGGCGGCGCTGCCGGCGACATCTGATCTCATCTGACCACG]

[+] EMBL AU075596             [GCACTCGCCGTCGGGATCGGTCGCGGCGGCGGCGGCGGGAGAGGAGGAGGGGGCCATGGTGGAGGCGGCGGCGGAGGACGGCGGCGCCGAGTCCAGGATCACCGCGCTCCTCTTCGACGTGTCGCAGCAGGTGCAGGAGGCCCTGCAGGGGATGCTGAAGATGACGGGGGAGATCGAGCAGTGCGGCGCCGAGATCNAGGCGGAGATCGAGCGGGCCAAGGAGGCCGTCGCCGACAAGGGCAGGGCGCTCGACGACGACCGCGAGAGGTTCCAGAAGGCCGCCGTCGCCGCGCTCAACATCCTCAGCGGCGGCGCTGCCGGCGACATCTGATCTCATCTGACCACG]




>consensus_5696#2
GCACTCGCCGTCGGGATCGGTCGCGGCGGCGGCGGCGGGAGAGGAGGAGGGGGCCATGGT
GGAGGCGGCGGCGGAGGACGGCGGCGCCGAGTCCAGGATCACCGCGCTCCTCTTCGACGT
GTCGCAGCAGGTGCAGGAGGCCCTGCAGGGGATGCTGAAGATGACGGGGGAGATCGAGCA
GTGCGGCGCCGAGATCNAGGCGGAGATCGAGCGGGCCAAGGAGGCCGTCGCCGACAAGGG
CAGGGCGCTCGACGACGACCGCGAGAGGTTCCAGAAGGCCGCCGTCGCCGCGCTCAACAT
CCTCAGCGGCGGCGCTGCCGGCGACATCTGATCTCATCTGACCACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5696#0      TCTGTCTCTCTCGTTCTTGCAACGACGGCGTCGGGCGGTGCGGCGGCGGCGGCGGCGGCG 60
consensus_5696#2      ------------------------------------------------------------
consensus_5696#1      ------TGTGATTATTATTCTTAATTCCCAAAGTACCCTCACAACCCTATCCATCCAAAC 54
                                                                                  

consensus_5696#0      TCTGCGGGTGCGCCGGGTGCAGCGGCGGCATGAAGCTGATCCCCACCGGCGCGCTCGGGC 120
consensus_5696#2      ------------------------------------------------------------
consensus_5696#1      CCTATCCATTCGAACAACTCTCTGTCTCTCTCGTTCTTGCAACGACGGCGTCGGGCGGTG 114
                                                                                  

consensus_5696#0      TTGCGGCGGCGGCGTTTGACGAAACGGTGGCGGCGTCTGCGGGTCCGTCGGTGGCGCTGA 180
consensus_5696#2      ------------------------------------------------------------
consensus_5696#1      CGGCGGCGGCGGCGTTTGACGAAACGGTGGCGGCGTCTGCGGGTCCGTCGGTGGCGCTGA 174
                                                                                  

consensus_5696#0      GGGGGCGGTGGCAGCGTAAAGCTGACTCCCCGCCGGCACCCGCTCGTGGAGGTAGAGGGC 240
consensus_5696#2      ------------------------------------------------------------
consensus_5696#1      GGGGGCGGTGGCAGCGTAAAGCTGACTCCCCGCCGGCACCCGCTCGTGGAGGTAGAGGGC 234
                                                                                  

consensus_5696#0      GGCGGCGGTGGGATCCGCGTCGGCGCCCAGCCGTGAAGGTAAGGAGCGGTGGCGGCGGGA 300
consensus_5696#2      ------------------------------------------------------------
consensus_5696#1      GGCGGCGGTGGGATCCGCGTCGGCGCCCAGCCGTGAAGGTAAGGAGCGGTGGCGGCGGGA 294
                                                                                  

consensus_5696#0      TCCGTGCCGGCGACCGGCCGTGAAGGGAGCGTAGGCGGCGCGGCGGCTCGCGGAGGAAGG 360
consensus_5696#2      ---------GC-ACTCGCCGTC--GGGATCG-----GTCGCGGCGGCG-GCGGCGGGAGA 42
consensus_5696#1      TCCGTGCCGGCGACCGGCCGTGAAGGGAGCGTAGGCGGCGCGGCGGCTCGCGGAGGAAGG 354
                               ** **  *****   **** **     * *********  **** ** ** 

consensus_5696#0      GAGCGGCGGCGGCTCGCGGAGGAAGTGAGCGGTGGCGGCGGATCCCCAGCGGCGGCTGCG 420
consensus_5696#2      GGA-GGAGGGGGC-CATGGTGGAGG----CGGCGGCGGAGGA-------CGGCGGCGCCG 89
consensus_5696#1      GAGCGGCGGCGGCTCGCGGAGGAAGTGAGCGGTGGCGGCGGATCCCCAGCGGCGGCTGCG 414
                      *   ** ** *** *  ** *** *    *** ***** ***       *******  **

consensus_5696#0      CGCAGTGGAGCTTATTGCAACTCGTTATCTTGCTTGATTCCAAATTAGACGCTGCAGAGC 480
consensus_5696#2      AGTCCAGGATCACCGCGCTCCTCTTCGACGTGTCGCAGCAGGTGCAGGAGGCCCTGCAGG 149
consensus_5696#1      CGCAGTGGAGCTTATTGCAACTCGTTATCTTGCTTGATTCCAAATTAGACGCTGCAGAGC 474
                       *    *** *     **  *** *   * **    *          ** **     ** 

consensus_5696#0      AGATGATTCACTCACGGATGACGGGGGAGATCGAGCAGTGCGGCGGCGAGATCGAGGCGG 540
consensus_5696#2      GGATGCTGAA------GATGACGGGGGAGATCGAGCAGTGCGGCGCCGAGATCNAGGCGG 203
consensus_5696#1      AGATGATTCACTCACGGATGACGGGGGAGATCGAGCAGTGCGGCGGCGAGATCGAGGCGG 534
                       **** *  *      ***************************** ******* ******

consensus_5696#0      AGATCGAGCGGGCCAAGGAGGTCGTCGCCAACAAGGGCAGGGCGCTCGACGACGACCGCG 600
consensus_5696#2      AGATCGAGCGGGCCAAGGAGGCCGTCGCCGACAAGGGCAGGGCGCTCGACGACGACCGCG 263
consensus_5696#1      AGATCGAGCGGGCCAAGGAGGTCGTCGGGTGCAGCGGCGGCATGAA-GCTGATCCCCACC 593
                      ********************* *****    **  *** *   *   *  **   ** * 

consensus_5696#0      AGAGGTTCCAGAAGGCCGCCGTCGCCGCGCTCAACATCCTCAGCGGCGGCGCCGCCGGCA 660
consensus_5696#2      AGAGGTTCCAGAAGGCCGCCGTCGCCGCGCTCAACATCCTCAGCGGCGGCGCTGCCGGCG 323
consensus_5696#1      GGCGCGCTCGG--GCTTGCGGCGGCGGCGTTTGACGA----AACGGTGGCAT-------G 640
                       * *    * *  *   ** *  ** *** *  **      * *** ***          

consensus_5696#0      GCATCTGATCTCATCTGACCATGGTGGCATGATATCTGATCAAACTAAACCTGAATGTTG 720
consensus_5696#2      ACATCTGATCTCATCTGACCACG------------------------------------- 346
consensus_5696#1      ATATCTGATCAA------------------------------------------------ 652
                        ********                                                  

consensus_5696#0      CCATCCCTGATTGATTTACTCATGTAATCCTGATCTCCACTGTTCCAGTACTACTTGATA 780
consensus_5696#2      ------------------------------------------------------------
consensus_5696#1      ------------------------------------------------------------
                                                                                  

consensus_5696#0      GTACTAGTAGTTGTTACCACTTACTAGTGTATAGGCAAAGTGCT 824
consensus_5696#2      --------------------------------------------
consensus_5696#1      --------------------------------------------