These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5696#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 824 fasta sequence [TCTGTCTCTCTCGTTCTTGCAACGACGGCGTCGGGCGGTGCGGCGGCGGCGGCGGCGGCGTCTGCGGGTGCGCCGGGTGCAGCGGCGGCATGAAGCTGATCCCCACCGGCGCGCTCGGGCTTGCGGCGGCGGCGTTTGACGAAACGGTGGCGGCGTCTGCGGGTCCGTCGGTGGCGCTGAGGGGGCGGTGGCAGCGTAAAGCTGACTCCCCGCCGGCACCCGCTCGTGGAGGTAGAGGGCGGCGGCGGTGGGATCCGCGTCGGCGCCCAGCCGTGAAGGTAAGGAGCGGTGGCGGCGGGATCCGTGCCGGCGACCGGCCGTGAAGGGAGCGTAGGCGGCGCGGCGGCTCGCGGAGGAAGGGAGCGGCGGCGGCTCGCGGAGGAAGTGAGCGGTGGCGGCGGATCCCCAGCGGCGGCTGCGCGCAGTGGAGCTTATTGCAACTCGTTATCTTGCTTGATTCCAAATTAGACGCTGCAGAGCAGATGATTCACTCACGGATGACGGGGGAGATCGAGCAGTGCGGCGGCGAGATCGAGGCGGAGATCGAGCGGGCCAAGGAGGTCGTCGCCAACAAGGGCAGGGCGCTCGACGACGACCGCGAGAGGTTCCAGAAGGCCGCCGTCGCCGCGCTCAACATCCTCAGCGGCGGCGCCGCCGGCAGCATCTGATCTCATCTGACCATGGTGGCATGATATCTGATCAAACTAAACCTGAATGTTGCCATCCCTGATTGATTTACTCATGTAATCCTGATCTCCACTGTTCCAGTACTACTTGATAGTACTAGTAGTTGTTACCACTTACTAGTGTATAGGCAAAGTGCT] [+] EMBL AK062802 [TCTGTCTCTCTCGTTCTTGCAACGACGGCGTCGGGCGGTGCGGCGGCGGCGGCGGCGGCGTCTGCGGGTGCGCCGGGTGCAGCGGCGGCATGAAGCTGATCCCCACCGGCGCGCTCGGGCTTGCGGCGGCGGCGTTTGACGAAACGGTGGCGGCGTCTGCGGGTCCGTCGGTGGCGCTGAGGGGGCGGTGGCAGCGTAAAGCTGACTCCCCGCCGGCACCCGCTCGTGGAGGTAGAGGGCGGCGGCGGTGGGATCCGCGTCGGCGCCCAGCCGTGAAGGTAAGGAGCGGTGGCGGCGGGATCCGTGCCGGCGACCGGCCGTGAAGGGAGCGTAGGCGGCGCGGCGGCTCGCGGAGGAAGGGAGCGGCGGCGGCTCGCGGAGGAAGTGAGCGGTGGCGGCGGATCCCCAGCGGCGGCTGCGCGCAGTGGAGCTTATTGCAACTCGTTATCTTGCTTGATTCCAAATTAGACGCTGCAGAGCAGATGATTCACTCACGGATGACGGGGGAGATCGAGCAGTGCGGCGGCGAGATCGAGGCGGAGATCGAGCGGGCCAAGGAGGTCGTCGCCAACAAGGGCAGGGCGCTCGACGACGACCGCGAGAGGTTCCAGAAGGCCGCCGTCGCCGCGCTCAACATCCTCAGCGGCGGCGCCGCCGGCAGCATCTGATCTCATCTGACCATGGTGGCATGATATCTGATCAAACTAAACCTGAATGTTGCCATCCCTGATTGATTTACTCATGTAATCCTGATCTCCACTGTTCCAGTACTACTTGATAGTACTAGTAGTTGTTACCACTTACTAGTGTATAGGCAAAGTGCT] consensusID : consensus_5696#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence [TGTGATTATTATTCTTAATTCCCAAAGTACCCTCACAACCCTATCCATCCAAACCCTATCCATTCGAACAACTCTCTGTCTCTCTCGTTCTTGCAACGACGGCGTCGGGCGGTGCGGCGGCGGCGGCGTTTGACGAAACGGTGGCGGCGTCTGCGGGTCCGTCGGTGGCGCTGAGGGGGCGGTGGCAGCGTAAAGCTGACTCCCCGCCGGCACCCGCTCGTGGAGGTAGAGGGCGGCGGCGGTGGGATCCGCGTCGGCGCCCAGCCGTGAAGGTAAGGAGCGGTGGCGGCGGGATCCGTGCCGGCGACCGGCCGTGAAGGGAGCGTAGGCGGCGCGGCGGCTCGCGGAGGAAGGGAGCGGCGGCGGCTCGCGGAGGAAGTGAGCGGTGGCGGCGGATCCCCAGCGGCGGCTGCGCGCAGTGGAGCTTATTGCAACTCGTTATCTTGCTTGATTCCAAATTAGACGCTGCAGAGCAGATGATTCACTCACGGATGACGGGGGAGATCGAGCAGTGCGGCGGCGAGATCGAGGCGGAGATCGAGCGGGCCAAGGAGGTCGTCGGGTGCAGCGGCGGCATGAAGCTGATCCCCACCGGCGCGCTCGGGCTTGCGGCGGCGGCGTTTGACGAAACGGTGGCATGATATCTGATCAA] [-] EMBL AK063622 [TGTGATTATTATTCTTAATTCCCAAAGTACCCTCACAACCCTATCCATCCAAACCCTATCCATTCGAACAACTCTCTGTCTCTCTCGTTCTTGCAACGACGGCGTCGGGCGGTGCGGCGGCGGCGGCGTTTGACGAAACGGTGGCGGCGTCTGCGGGTCCGTCGGTGGCGCTGAGGGGGCGGTGGCAGCGTAAAGCTGACTCCCCGCCGGCACCCGCTCGTGGAGGTAGAGGGCGGCGGCGGTGGGATCCGCGTCGGCGCCCAGCCGTGAAGGTAAGGAGCGGTGGCGGCGGGATCCGTGCCGGCGACCGGCCGTGAAGGGAGCGTAGGCGGCGCGGCGGCTCGCGGAGGAAGGGAGCGGCGGCGGCTCGCGGAGGAAGTGAGCGGTGGCGGCGGATCCCCAGCGGCGGCTGCGCGCAGTGGAGCTTATTGCAACTCGTTATCTTGCTTGATTCCAAATTAGACGCTGCAGAGCAGATGATTCACTCACGGATGACGGGGGAGATCGAGCAGTGCGGCGGCGAGATCGAGGCGGAGATCGAGCGGGCCAAGGAGGTCGTCGGGTGCAGCGGCGGCATGAAGCTGATCCCCACCGGCGCGCTCGGGCTTGCGGCGGCGGCGTTTGACGAAACGGTGGCATGATATCTGATCAA] consensusID : consensus_5696#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence [GCACTCGCCGTCGGGATCGGTCGCGGCGGCGGCGGCGGGAGAGGAGGAGGGGGCCATGGTGGAGGCGGCGGCGGAGGACGGCGGCGCCGAGTCCAGGATCACCGCGCTCCTCTTCGACGTGTCGCAGCAGGTGCAGGAGGCCCTGCAGGGGATGCTGAAGATGACGGGGGAGATCGAGCAGTGCGGCGCCGAGATCNAGGCGGAGATCGAGCGGGCCAAGGAGGCCGTCGCCGACAAGGGCAGGGCGCTCGACGACGACCGCGAGAGGTTCCAGAAGGCCGCCGTCGCCGCGCTCAACATCCTCAGCGGCGGCGCTGCCGGCGACATCTGATCTCATCTGACCACG] [+] EMBL AU075596 [GCACTCGCCGTCGGGATCGGTCGCGGCGGCGGCGGCGGGAGAGGAGGAGGGGGCCATGGTGGAGGCGGCGGCGGAGGACGGCGGCGCCGAGTCCAGGATCACCGCGCTCCTCTTCGACGTGTCGCAGCAGGTGCAGGAGGCCCTGCAGGGGATGCTGAAGATGACGGGGGAGATCGAGCAGTGCGGCGCCGAGATCNAGGCGGAGATCGAGCGGGCCAAGGAGGCCGTCGCCGACAAGGGCAGGGCGCTCGACGACGACCGCGAGAGGTTCCAGAAGGCCGCCGTCGCCGCGCTCAACATCCTCAGCGGCGGCGCTGCCGGCGACATCTGATCTCATCTGACCACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5696#0 TCTGTCTCTCTCGTTCTTGCAACGACGGCGTCGGGCGGTGCGGCGGCGGCGGCGGCGGCG 60 consensus_5696#2 ------------------------------------------------------------ consensus_5696#1 ------TGTGATTATTATTCTTAATTCCCAAAGTACCCTCACAACCCTATCCATCCAAAC 54 consensus_5696#0 TCTGCGGGTGCGCCGGGTGCAGCGGCGGCATGAAGCTGATCCCCACCGGCGCGCTCGGGC 120 consensus_5696#2 ------------------------------------------------------------ consensus_5696#1 CCTATCCATTCGAACAACTCTCTGTCTCTCTCGTTCTTGCAACGACGGCGTCGGGCGGTG 114 consensus_5696#0 TTGCGGCGGCGGCGTTTGACGAAACGGTGGCGGCGTCTGCGGGTCCGTCGGTGGCGCTGA 180 consensus_5696#2 ------------------------------------------------------------ consensus_5696#1 CGGCGGCGGCGGCGTTTGACGAAACGGTGGCGGCGTCTGCGGGTCCGTCGGTGGCGCTGA 174 consensus_5696#0 GGGGGCGGTGGCAGCGTAAAGCTGACTCCCCGCCGGCACCCGCTCGTGGAGGTAGAGGGC 240 consensus_5696#2 ------------------------------------------------------------ consensus_5696#1 GGGGGCGGTGGCAGCGTAAAGCTGACTCCCCGCCGGCACCCGCTCGTGGAGGTAGAGGGC 234 consensus_5696#0 GGCGGCGGTGGGATCCGCGTCGGCGCCCAGCCGTGAAGGTAAGGAGCGGTGGCGGCGGGA 300 consensus_5696#2 ------------------------------------------------------------ consensus_5696#1 GGCGGCGGTGGGATCCGCGTCGGCGCCCAGCCGTGAAGGTAAGGAGCGGTGGCGGCGGGA 294 consensus_5696#0 TCCGTGCCGGCGACCGGCCGTGAAGGGAGCGTAGGCGGCGCGGCGGCTCGCGGAGGAAGG 360 consensus_5696#2 ---------GC-ACTCGCCGTC--GGGATCG-----GTCGCGGCGGCG-GCGGCGGGAGA 42 consensus_5696#1 TCCGTGCCGGCGACCGGCCGTGAAGGGAGCGTAGGCGGCGCGGCGGCTCGCGGAGGAAGG 354 ** ** ***** **** ** * ********* **** ** ** consensus_5696#0 GAGCGGCGGCGGCTCGCGGAGGAAGTGAGCGGTGGCGGCGGATCCCCAGCGGCGGCTGCG 420 consensus_5696#2 GGA-GGAGGGGGC-CATGGTGGAGG----CGGCGGCGGAGGA-------CGGCGGCGCCG 89 consensus_5696#1 GAGCGGCGGCGGCTCGCGGAGGAAGTGAGCGGTGGCGGCGGATCCCCAGCGGCGGCTGCG 414 * ** ** *** * ** *** * *** ***** *** ******* ** consensus_5696#0 CGCAGTGGAGCTTATTGCAACTCGTTATCTTGCTTGATTCCAAATTAGACGCTGCAGAGC 480 consensus_5696#2 AGTCCAGGATCACCGCGCTCCTCTTCGACGTGTCGCAGCAGGTGCAGGAGGCCCTGCAGG 149 consensus_5696#1 CGCAGTGGAGCTTATTGCAACTCGTTATCTTGCTTGATTCCAAATTAGACGCTGCAGAGC 474 * *** * ** *** * * ** * ** ** ** consensus_5696#0 AGATGATTCACTCACGGATGACGGGGGAGATCGAGCAGTGCGGCGGCGAGATCGAGGCGG 540 consensus_5696#2 GGATGCTGAA------GATGACGGGGGAGATCGAGCAGTGCGGCGCCGAGATCNAGGCGG 203 consensus_5696#1 AGATGATTCACTCACGGATGACGGGGGAGATCGAGCAGTGCGGCGGCGAGATCGAGGCGG 534 **** * * ***************************** ******* ****** consensus_5696#0 AGATCGAGCGGGCCAAGGAGGTCGTCGCCAACAAGGGCAGGGCGCTCGACGACGACCGCG 600 consensus_5696#2 AGATCGAGCGGGCCAAGGAGGCCGTCGCCGACAAGGGCAGGGCGCTCGACGACGACCGCG 263 consensus_5696#1 AGATCGAGCGGGCCAAGGAGGTCGTCGGGTGCAGCGGCGGCATGAA-GCTGATCCCCACC 593 ********************* ***** ** *** * * * ** ** * consensus_5696#0 AGAGGTTCCAGAAGGCCGCCGTCGCCGCGCTCAACATCCTCAGCGGCGGCGCCGCCGGCA 660 consensus_5696#2 AGAGGTTCCAGAAGGCCGCCGTCGCCGCGCTCAACATCCTCAGCGGCGGCGCTGCCGGCG 323 consensus_5696#1 GGCGCGCTCGG--GCTTGCGGCGGCGGCGTTTGACGA----AACGGTGGCAT-------G 640 * * * * * ** * ** *** * ** * *** *** consensus_5696#0 GCATCTGATCTCATCTGACCATGGTGGCATGATATCTGATCAAACTAAACCTGAATGTTG 720 consensus_5696#2 ACATCTGATCTCATCTGACCACG------------------------------------- 346 consensus_5696#1 ATATCTGATCAA------------------------------------------------ 652 ******** consensus_5696#0 CCATCCCTGATTGATTTACTCATGTAATCCTGATCTCCACTGTTCCAGTACTACTTGATA 780 consensus_5696#2 ------------------------------------------------------------ consensus_5696#1 ------------------------------------------------------------ consensus_5696#0 GTACTAGTAGTTGTTACCACTTACTAGTGTATAGGCAAAGTGCT 824 consensus_5696#2 -------------------------------------------- consensus_5696#1 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||