These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5699#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1488 fasta sequence [TTTATGTGCTCGAAACGCCAAAATCCTGCATCATCTTCCACGGCTCTCCAACCCCAAAAAATTCAGTCTCATTCCTTTCCTTCCCGTGGTCCATCTTGCCAGCCGTGGAAGCATCAGCAATGAGCTCGCATTCCCATGCATGGTCTGGTCGCTGAGATGAAGATGAAGACGGCACCACATTTTGCCGGGAAGCCGACCGGCTGACAACGCCGTGCAGCCACTGCAATTCGCTACTACGGAATTCAGTCTGAAACTCTGAACAAATTTCAGAGAGAGAGAGGCAATTCGCTACTCTGAAACTCTGAACAAAATTTCAGAGGGAGAGAGAGGGGATGCGATTGCAAGTTTGCAATGCAAGGGTTGTAACAATCACATTACAAATCAGAGGCAACAGATTACAAGATCACTACTAGATCAGCACTCCATCAGCTAAGGTCTTTTTTCTCTCTCGCGAGGTTAATCACAGGGATCAAAATTAGTGACACAAATCTACACACTCCTAACACACAAAGATCTCGTCCTCTTTTTTCCTTCTTTTTTGGGGGTGGTTGTTGTTGTTTGGACCATCCAGCCTCCTTGATAATTGTCGTCATTGGCATTCAATTCACTGGATCAAGGAATGGCAGCGGCGGCGGTGGTGGTGGTGGTGGTTGAGGCAGATGAAGACGAACAAGGTATTCGATCGAGGACCAGCACGGCGTCCCTCATGGCGGGCCTCTTGCCGGGCGCCATGGCGCAGCAGGCGAAGGCGAGCTTGAAGCAGGCGAGCAGGGCGTCCTCCCTGCCGTCGGCCTCGCCGCGGAGCGTCGGGTCGGCCATGCGGAGCAGCCGGCTCCGCTCCTCGACGACGAACCCGGCGTGCCACTGGCAGAGCTCCACCTCCGAGTAGACCCTCCCGGAGAGGAGCTCCAGGAGCACCATGCCGAAGGAGTAGACGTCCCACTTGGTGTTCGGCCTGAGGTTCTTGAGGCACTCCGGCGCCTGGTACGGCGGCGGCGCGGCCGCGGCTGCGGCCGACGTCGCCGCAGACGACGACCCGCATGGGCTGGCGCCGGCGCCGGGCATCTGGGACAGGTCGGGCAGGCTGCTCGTCGAGTGCATCGAGCGCTTGCTCCCGAACAGCCTCGCCGACGCGCCCGTGCTCCGGTGCACGGCCTCGCCGGAGAGCAGCCGGTCCAGGCCGAAGTCGCCGATCCACGGCTCCATGTCGGCGCCGAGCAGGATGTTGCTCGGCTTCACGTTGCCGTGCACCCCCTTCTTCTCGTGGATGAACGCCAGCCCGCGCGCCACGCCGCGCGCGATCCGCAGCCGCGCCTCCAAGCTCAGCTGCAGCGGCGACGACGCCCCGAACCGCCCTGCAAATCGCCCATCATCTTTCCATTAAAATTTCTAATCTCTACACCTCAGTTTTTGCTTAGTTTGCAAGTGAATTTAGTGCTTATAAAGTTGGTCTACTGTTCCTGCATAATCAATGCCAAATTACGAGCT] [+] EMBL AK109644 [TTTATGTGCTCGAAACGCCAAAATCCTGCATCATCTTCCACGGCTCTCCAACCCCAAAAAATTCAGTCTCATTCCTTTCCTTCCCGTGGTCCATCTTGCCAGCCGTGGAAGCATCAGCAATGAGCTCGCATTCCCATGCATGGTCTGGTCGCTGAGATGAAGATGAAGACGGCACCACATTTTGCCGGGAAGCCGACCGGCTGACAACGCCGTGCAGCCACTGCAATTCGCTACTACGGAATTCAGTCTGAAACTCTGAACAAATTTCAGAGAGAGAGAGGCAATTCGCTACTCTGAAACTCTGAACAAAATTTCAGAGGGAGAGAGAGGGGATGCGATTGCAAGTTTGCAATGCAAGGGTTGTAACAATCACATTACAAATCAGAGGCAACAGATTACAAGATCACTACTAGATCAGCACTCCATCAGCTAAGGTCTTTTTTCTCTCTCGCGAGGTTAATCACAGGGATCAAAATTAGTGACACAAATCTACACACTCCTAACACACAAAGATCTCGTCCTCTTTTTTCCTTCTTTTTTGGGGGTGGTTGTTGTTGTTTGGACCATCCAGCCTCCTTGATAATTGTCGTCATTGGCATTCAATTCACTGGATCAAGGAATGGCAGCGGCGGCGGTGGTGGTGGTGGTGGTTGAGGCAGATGAAGACGAACAAGGTATTCGATCGAGGACCAGCACGGCGTCCCTCATGGCGGGCCTCTTGCCGGGCGCCATGGCGCAGCAGGCGAAGGCGAGCTTGAAGCAGGCGAGCAGGGCGTCCTCCCTGCCGTCGGCCTCGCCGCGGAGCGTCGGGTCGGCCATGCGGAGCAGCCGGCTCCGCTCCTCGACGACGAACCCGGCGTGCCACTGGCAGAGCTCCACCTCCGAGTAGACCCTCCCGGAGAGGAGCTCCAGGAGCACCATGCCGAAGGAGTAGACGTCCCACTTGGTGTTCGGCCTGAGGTTCTTGAGGCACTCCGGCGCCTGGTACGGCGGCGGCGCGGCCGCGGCTGCGGCCGACGTCGCCGCAGACGACGACCCGCATGGGCTGGCGCCGGCGCCGGGCATCTGGGACAGGTCGGGCAGGCTGCTCGTCGAGTGCATCGAGCGCTTGCTCCCGAACAGCCTCGCCGACGCGCCCGTGCTCCGGTGCACGGCCTCGCCGGAGAGCAGCCGGTCCAGGCCGAAGTCGCCGATCCACGGCTCCATGTCGGCGCCGAGCAGGATGTTGCTCGGCTTCACGTTGCCGTGCACCCCCTTCTTCTCGTGGATGAACGCCAGCCCGCGCGCCACGCCGCGCGCGATCCGCAGCCGCGCCTCCAAGCTCAGCTGCAGCGGCGACGACGCCCCGAACCGCCCTGCAAATCGCCCATCATCTTTCCATTAAAATTTCTAATCTCTACACCTCAGTTTTTGCTTAGTTTGCAAGTGAATTTAGTGCTTATAAAGTTGGTCTACTGTTCCTGCATAATCAATGCCAAATTACGAGCT] [+] EMBL AU176490 [ CATGGGCTGGCGCCGGCGCCGGGCATCTGGGACAGGTCGGGCAGGCTGCTCGTCGAGTGCATCGAGCGCTTGCTCCCGAACAGCCTCGCCGACGCGCCCGTGCTCCGGTGCACGGCCTCGCCGGAGAGCAGCCGGTCCAGGCCGAAGTCGCCGATCCACGGCTCCATGTCGGCGCCGAGCAGGATGTTGCTCGGCTTCACGTTGCCGTGCACCCCCTTCTTCTCGTGGATGAACGCCAGCCCGCGCGCCACGCCGCGCGCGATCCGCAGCCGCGCCTCCAA ] consensusID : consensus_5699#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [GACGACCCGCATGGGCTGGCGCCGGCGCCGGGCATCTGGGACAGGTCGGGCAGGCTGCTCGTCGAGTGCATCGAGCGCTTGCTCCCGAACAGCCTCGCCGACGCGCCCGTGCTCCGGTGCACGGCCTCGCCGGAGAGCAGCCGGTCCAGGCCGAAGTCGCCGATCCACGGCTCCATGTCGGCGCCGAGCAGGATGTTGCTCGGCTTCACGTTGCCGTGCACCCCCTTCTTCTCGTGGATGAACGCCAGCCCGCGCGCCACGCCGCGGCGAATCCGCAGCCGCGCCTCCAAGCTCAGCTGCAGCGGCGACGACGCCCCGAACCGCCTGCTGAAGGCGATGTTGGCGAGGCTGCCATTGGTGGCGTAGTCATGGATGAGGAGCTTCTCGTCGGCGCCCCAGTAGAAGCCGCGGAGGCGGGAGGGATGTTCGGGTGGCGGAAGCGCGC] [-] EMBL C99530 [GACGACCCGCATGGGCTGGCGCCGGCGCCGGGCATCTGGGACAGGTCGGGCAGGCTGCTCGTCGAGTGCATCGAGCGCTTGCTCCCGAACAGCCTCGCCGACGCGCCCGTGCTCCGGTGCACGGCCTCGCCGGAGAGCAGCCGGTCCAGGCCGAAGTCGCCGATCCACGGCTCCATGTCGGCGCCGAGCAGGATGTTGCTCGGCTTCACGTTGCCGTGCACCCCCTTCTTCTCGTGGATGAACGCCAGCCCGCGCGCCACGCCGCGGCGAATCCGCAGCCGCGCCTCCAAGCTCAGCTGCAGCGGCGACGACGCCCCGAACCGCCTGCTGAAGGCGATGTTGGCGAGGCTGCCATTGGTGGCGTAGTCATGGATGAGGAGCTTCTCGTCGGCGCCCCAGTAGAAGCCGCGGAGGCGGGAGGGATGTTCGGGTGGCGGAAGCGCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5699#0 TTTATGTGCTCGAAACGCCAAAATCCTGCATCATCTTCCACGGCTCTCCAACCCCAAAAA 60 consensus_5699#1 ------------------------------------------------------------ consensus_5699#0 ATTCAGTCTCATTCCTTTCCTTCCCGTGGTCCATCTTGCCAGCCGTGGAAGCATCAGCAA 120 consensus_5699#1 ------------------------------------------------------------ consensus_5699#0 TGAGCTCGCATTCCCATGCATGGTCTGGTCGCTGAGATGAAGATGAAGACGGCACCACAT 180 consensus_5699#1 ------------------------------------------------------------ consensus_5699#0 TTTGCCGGGAAGCCGACCGGCTGACAACGCCGTGCAGCCACTGCAATTCGCTACTACGGA 240 consensus_5699#1 ------------------------------------------------------------ consensus_5699#0 ATTCAGTCTGAAACTCTGAACAAATTTCAGAGAGAGAGAGGCAATTCGCTACTCTGAAAC 300 consensus_5699#1 ------------------------------------------------------------ consensus_5699#0 TCTGAACAAAATTTCAGAGGGAGAGAGAGGGGATGCGATTGCAAGTTTGCAATGCAAGGG 360 consensus_5699#1 ------------------------------------------------------------ consensus_5699#0 TTGTAACAATCACATTACAAATCAGAGGCAACAGATTACAAGATCACTACTAGATCAGCA 420 consensus_5699#1 ------------------------------------------------------------ consensus_5699#0 CTCCATCAGCTAAGGTCTTTTTTCTCTCTCGCGAGGTTAATCACAGGGATCAAAATTAGT 480 consensus_5699#1 ------------------------------------------------------------ consensus_5699#0 GACACAAATCTACACACTCCTAACACACAAAGATCTCGTCCTCTTTTTTCCTTCTTTTTT 540 consensus_5699#1 ------------------------------------------------------------ consensus_5699#0 GGGGGTGGTTGTTGTTGTTTGGACCATCCAGCCTCCTTGATAATTGTCGTCATTGGCATT 600 consensus_5699#1 ------------------------------------------------------------ consensus_5699#0 CAATTCACTGGATCAAGGAATGGCAGCGGCGGCGGTGGTGGTGGTGGTGGTTGAGGCAGA 660 consensus_5699#1 ------------------------------------------------------------ consensus_5699#0 TGAAGACGAACAAGGTATTCGATCGAGGACCAGCACGGCGTCCCTCATGGCGGGCCTCTT 720 consensus_5699#1 ------------------------------------------------------------ consensus_5699#0 GCCGGGCGCCATGGCGCAGCAGGCGAAGGCGAGCTTGAAGCAGGCGAGCAGGGCGTCCTC 780 consensus_5699#1 ------------------------------------------------------------ consensus_5699#0 CCTGCCGTCGGCCTCGCCGCGGAGCGTCGGGTCGGCCATGCGGAGCAGCCGGCTCCGCTC 840 consensus_5699#1 ------------------------------------------------------------ consensus_5699#0 CTCGACGACGAACCCGGCGTGCCACTGGCAGAGCTCCACCTCCGAGTAGACCCTCCCGGA 900 consensus_5699#1 ------------------------------------------------------------ consensus_5699#0 GAGGAGCTCCAGGAGCACCATGCCGAAGGAGTAGACGTCCCACTTGGTGTTCGGCCTGAG 960 consensus_5699#1 ------------------------------------------------------------ consensus_5699#0 GTTCTTGAGGCACTCCGGCGCCTGGTACGGCGGCGGCGCGGCCGCGGCTGCGGCCGACGT 1020 consensus_5699#1 ------------------------------------------------------------ consensus_5699#0 CGCCGCAGACGACGACCCGCATGGGCTGGCGCCGGCGCCGGGCATCTGGGACAGGTCGGG 1080 consensus_5699#1 ----------GACGACCCGCATGGGCTGGCGCCGGCGCCGGGCATCTGGGACAGGTCGGG 50 ************************************************** consensus_5699#0 CAGGCTGCTCGTCGAGTGCATCGAGCGCTTGCTCCCGAACAGCCTCGCCGACGCGCCCGT 1140 consensus_5699#1 CAGGCTGCTCGTCGAGTGCATCGAGCGCTTGCTCCCGAACAGCCTCGCCGACGCGCCCGT 110 ************************************************************ consensus_5699#0 GCTCCGGTGCACGGCCTCGCCGGAGAGCAGCCGGTCCAGGCCGAAGTCGCCGATCCACGG 1200 consensus_5699#1 GCTCCGGTGCACGGCCTCGCCGGAGAGCAGCCGGTCCAGGCCGAAGTCGCCGATCCACGG 170 ************************************************************ consensus_5699#0 CTCCATGTCGGCGCCGAGCAGGATGTTGCTCGGCTTCACGTTGCCGTGCACCCCCTTCTT 1260 consensus_5699#1 CTCCATGTCGGCGCCGAGCAGGATGTTGCTCGGCTTCACGTTGCCGTGCACCCCCTTCTT 230 ************************************************************ consensus_5699#0 CTCGTGGATGAACGCCAGCCCGCGCGCCACGCCGCGCGCGATCCGCAGCCGCGCCTCCAA 1320 consensus_5699#1 CTCGTGGATGAACGCCAGCCCGCGCGCCACGCCGCGGCGAATCCGCAGCCGCGCCTCCAA 290 ************************************ ******************** consensus_5699#0 GCTCAGCTGCAGCGGCGACGACGCCCCGAACCGCC--CTGCAAAT--CGCCCATCATCTT 1376 consensus_5699#1 GCTCAGCTGCAGCGGCGACGACGCCCCGAACCGCCTGCTGAAGGCGATGTTGGCGAGGCT 350 *********************************** *** * * * * consensus_5699#0 TCCATTAAAATTTCTAATCTCTACACCTCAGTTTTTGCTTAGTTTGCAAGTGAATTTAGT 1436 consensus_5699#1 GCCATTGGTGGCG-TAGTCATGGATGAGGAGCTTCTCGTCGGCGCCCCAGTAGAAGCCGC 409 ***** ** ** ** ** * * * * *** * * consensus_5699#0 GCTTATAAAGTTGGTCTACTGTTCCTGCATAATCAATGCCAAATTACGAGCT 1488 consensus_5699#1 G-----GAGGCGGGAGGGATGTTCGGGTGGCGGAAGCGCGC----------- 445 * * * ** ***** * * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||