cluster # 5701

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Oryza sativa
cluster # 5701 cluster # 5701 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5701#0 length = 779 sequences # 2

consensus_5701#1 length = 756 sequences # 1

consensusID : consensus_5701#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 779
fasta sequence

                              [TGTCTTTTTTATTTTTTTTAGCTCCAGTCTGCAAATAACATGAGACTATACTGACCATATAAAATTACAATGGTACCTCAATAGGCAGAATATCTGCATCTGACTTCGAATTCAAGGACCAAACACTACCGAAGTTCGCCTTTGATCACTTTAGATGCATACACATTTCACTTATCTATGAAAAACTAAAAACTAAAAGGGTTATCTAGGATATATGTCAGTAAGTGTGATCCCATTCGCAGAGATATCCTCTTCATAGATCTTACCAGACCGATCGTACACATAGACGCGCTGGTCAGATGTTTGAGAAGCTGAGTTCGAGTTTCCGTTGAAAAAAAATGCAGGCTCTGTTGGTGGCTGAAGCTCCATGTTATCCCTGGTCAGCATGAAAATGACTGATGGAATGTCCGGCCTGTCGTCAGGATCTGATTGGACACACAGCAGCCCAATGTGGATGCATCTTAGCGCCTGGTTTCGAAAGTGCCCTTCAAGTGATTGGTCAATTACCTGTGAAATCACACCTTCGGTCCAGTAACTCCATACATCACTTAGGAGATTCACTGTGTCAGTGGTGCCATCGCCATAGCTGCAGTTCTTTCTCTTGGTTACAATTTCAAGTACCAGCACGCCAAAGCTGAAAATGTCAATCTTTGGTGACACATTTCCATGTATTGCATACTCTGGTGCCATATATCCGTATGTTCCAACAATTCTAGTTGTCTTTGTGTGAGTATGACCTCCTCCTATCAGTCTTGCTAGTCCAAAGTCTGCAATTTTTG]

[+] EMBL CB628016             [TGTCTTTTTTATTTTTTTTAGCTCCAGTCTGCAAATAACATGAGACTATACTGACCATATAAAATTACAATGGTACCTCAATAGGCAGAATATCTGCATCTGACTTCGAATTCAAGGACCAAACACTACCGAAGTTCGCCTTTGATCACTTTAGATGCATACACATTTCACTTATCTATGAAAAACTAAAAACTAAAAGGGTTATCTAGGATATATGTCAGTAAGTGTGATCCCATTCGCAGAGATATCCTCTTCATAGATCTTACCAGACCGATCGTACACATAGACGCGCTGGTCAGATGTTTGAGAAGCTGAGTTCGAGTTTCCGTTGAAAAAAAATGCAGGCTCTGTTGGTGGCTGAAGCTCCATGTTATCCCTGGTCAGCATGAAAATGACTGATGGAATGTCCGGCCTGTCGTCAGGATCTGATTGGACACACAGCAGCCCAATGTGGATGCATCTTAGCGCCTGGTTTCGAAAGTGCCCTTCAAGTGATTGGTCAATTACCTGTGAAATCACACCTTCGGTCCAGTAACTCCATACATCACTTAGGAGATTCACTGTGTCAGTGGTGCCATCGCCATAGCTGCAGTTCTTTCTCTTGGTTACAATTTCAAGTACCAGCACGCCAAAGCTGAAAATGTCAATCTTTGGTGACACATTTCCATGTATTGCATACTCTGGTGCCATATATCCGTATGTTCCAACAATTCTAGTTGTCTTTGTGTGAGTATGACCTCCTCCTATCAGTCTTGCTAGTCCAAAGTCTGCAATTTTTG]
[+] EMBL CB634502             [                                          AGA TA ACTGACC TTTAAAATTACAATGTTACCTCAATAGGCAGAATATCTGCATCTGACTTCGAATTCAAGGACCAAACACTCCCGAAGTTCGCCTTTGATCACTTTAGATGCATACACATTTCACTTATCTATGAAAAACTAAAAACTAAAAGGGTTATCTAGGATATGTGTCAGTAAGTGTGATCCCATTCGCAGAGATATCCTCTTCATAGATCTTACCAGACCGATCGTACACATAGACGCGCTGGTCAGATGTTTGAGAAGCTGAGTTCGAGTTTCCGTTGAAGAAGAATGCAGGCTCTGTTGGTGGCTGAAGCTCCATGTTATCCCTGGTCAGCATGAAAATGACTGATGGAATGTCCGGCCTGTCGTCAGGATCTGATTGGACACACAGCAGCCCAATGTGGATGCATCTTAGCGCCTGGTTTCGAAAGTGCCCTTCAAGTGATTGGTCAATTACCTGTGAAATCACACCTTCGGTCCAGTAACTCCATACATCACTTAGGAGATTCACTGTGTCAGTGGTGCCATCGCCATAGCTGCAGTTCTTTCTCTTGGTTACAATTTCAAGTACCAGCACGCCAAAGCTGAAAATGTCAATCTTTGGTGACACATTTCCATGTATTGCATACTCTGGTGCCATATATCCGTATGTTCCAACAATTCTAGTTGTCTTTGTGTGAGTATGACCTCCTCCTAT                                ]




>consensus_5701#0
TGTCTTTTTTATTTTTTTTAGCTCCAGTCTGCAAATAACATGAGACTATACTGACCATAT
AAAATTACAATGGTACCTCAATAGGCAGAATATCTGCATCTGACTTCGAATTCAAGGACC
AAACACTACCGAAGTTCGCCTTTGATCACTTTAGATGCATACACATTTCACTTATCTATG
AAAAACTAAAAACTAAAAGGGTTATCTAGGATATATGTCAGTAAGTGTGATCCCATTCGC
AGAGATATCCTCTTCATAGATCTTACCAGACCGATCGTACACATAGACGCGCTGGTCAGA
TGTTTGAGAAGCTGAGTTCGAGTTTCCGTTGAAAAAAAATGCAGGCTCTGTTGGTGGCTG
AAGCTCCATGTTATCCCTGGTCAGCATGAAAATGACTGATGGAATGTCCGGCCTGTCGTC
AGGATCTGATTGGACACACAGCAGCCCAATGTGGATGCATCTTAGCGCCTGGTTTCGAAA
GTGCCCTTCAAGTGATTGGTCAATTACCTGTGAAATCACACCTTCGGTCCAGTAACTCCA
TACATCACTTAGGAGATTCACTGTGTCAGTGGTGCCATCGCCATAGCTGCAGTTCTTTCT
CTTGGTTACAATTTCAAGTACCAGCACGCCAAAGCTGAAAATGTCAATCTTTGGTGACAC
ATTTCCATGTATTGCATACTCTGGTGCCATATATCCGTATGTTCCAACAATTCTAGTTGT
CTTTGTGTGAGTATGACCTCCTCCTATCAGTCTTGCTAGTCCAAAGTCTGCAATTTTTG

consensusID : consensus_5701#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 756
fasta sequence

                              [TCTTTTTTTTTTTTTTTTTTGAGATAACTGACCATATAAAATTACAATGGTACCTCAATAGGCAGAATATCTGCATCTGACTTCGAATTCAAGGACCAAACACTAGCGAAGTTCCCCTTTGATCACTTTAGATGCATACACATTTCACTTATCTATGAAAAACTAAAAACTAAAAGGGTTATCTAGGATATATGTCAGTAAGTGTGATCCCATTCGCAGAAATATCCTCTTCATAGATCTTACCAGACCGATCGTACACATAGACGCGCTGGTCAGATGTTTGAGAAGCTGAGTTCGAGTTTCCGTTGAAAAAAAATGCAGGCTCTGTTGGTGGCTGAAGCTCCATGTTATCCCTGGTCAGCATGAAAATGACTGATGGAATGTCCGGCCTGTCGTCAGGATCTGATTGGACACACAGCAGCCCAATGGGGATGCATCTTAGCGCCTGGTTTCGAAAGTGCCCTTCAAGTGATTGGTCAATTACCTGTGAAATCACACCTTCGGTCCAGTAACTCCATACATCACTTAGGAGATTCACTGTGTCAGTGGTGCCATCGCCATAGCTGCAGTTCTTTCTCTTGGGTACAATTTCAAGTACCAGCACGCCAAAGCTGAAAATGTCAATCTTTGGTGACACATTTCCATGTATTGCATACTCTGGTGCCATATATCCGTATGTTCCAACAATTCTAGTTGTCTTTGTGTGAGTATGACCTCCTCCTATCAGTCTTGCTAGTCCAAAGTCTGCAATTTTTG]

[+] EMBL CB632757             [TCTTTTTTTTTTTTTTTTTTGAGATAACTGACCATATAAAATTACAATGGTACCTCAATAGGCAGAATATCTGCATCTGACTTCGAATTCAAGGACCAAACACTAGCGAAGTTCCCCTTTGATCACTTTAGATGCATACACATTTCACTTATCTATGAAAAACTAAAAACTAAAAGGGTTATCTAGGATATATGTCAGTAAGTGTGATCCCATTCGCAGAAATATCCTCTTCATAGATCTTACCAGACCGATCGTACACATAGACGCGCTGGTCAGATGTTTGAGAAGCTGAGTTCGAGTTTCCGTTGAAAAAAAATGCAGGCTCTGTTGGTGGCTGAAGCTCCATGTTATCCCTGGTCAGCATGAAAATGACTGATGGAATGTCCGGCCTGTCGTCAGGATCTGATTGGACACACAGCAGCCCAATGGGGATGCATCTTAGCGCCTGGTTTCGAAAGTGCCCTTCAAGTGATTGGTCAATTACCTGTGAAATCACACCTTCGGTCCAGTAACTCCATACATCACTTAGGAGATTCACTGTGTCAGTGGTGCCATCGCCATAGCTGCAGTTCTTTCTCTTGGGTACAATTTCAAGTACCAGCACGCCAAAGCTGAAAATGTCAATCTTTGGTGACACATTTCCATGTATTGCATACTCTGGTGCCATATATCCGTATGTTCCAACAATTCTAGTTGTCTTTGTGTGAGTATGACCTCCTCCTATCAGTCTTGCTAGTCCAAAGTCTGCAATTTTTG]




>consensus_5701#1
TCTTTTTTTTTTTTTTTTTTGAGATAACTGACCATATAAAATTACAATGGTACCTCAATA
GGCAGAATATCTGCATCTGACTTCGAATTCAAGGACCAAACACTAGCGAAGTTCCCCTTT
GATCACTTTAGATGCATACACATTTCACTTATCTATGAAAAACTAAAAACTAAAAGGGTT
ATCTAGGATATATGTCAGTAAGTGTGATCCCATTCGCAGAAATATCCTCTTCATAGATCT
TACCAGACCGATCGTACACATAGACGCGCTGGTCAGATGTTTGAGAAGCTGAGTTCGAGT
TTCCGTTGAAAAAAAATGCAGGCTCTGTTGGTGGCTGAAGCTCCATGTTATCCCTGGTCA
GCATGAAAATGACTGATGGAATGTCCGGCCTGTCGTCAGGATCTGATTGGACACACAGCA
GCCCAATGGGGATGCATCTTAGCGCCTGGTTTCGAAAGTGCCCTTCAAGTGATTGGTCAA
TTACCTGTGAAATCACACCTTCGGTCCAGTAACTCCATACATCACTTAGGAGATTCACTG
TGTCAGTGGTGCCATCGCCATAGCTGCAGTTCTTTCTCTTGGGTACAATTTCAAGTACCA
GCACGCCAAAGCTGAAAATGTCAATCTTTGGTGACACATTTCCATGTATTGCATACTCTG
GTGCCATATATCCGTATGTTCCAACAATTCTAGTTGTCTTTGTGTGAGTATGACCTCCTC
CTATCAGTCTTGCTAGTCCAAAGTCTGCAATTTTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5701#0      TGTCTTTTTTATTTTTTTTAGCTCCAGTCTGCAAATAACATGAGACTATACTGACCATAT 60
consensus_5701#1      --TCTTTTTTTTTTTTTTT--------TTTG-AGATAAC------------TGACCATAT 37
                        ******** ********        * ** * *****            *********

consensus_5701#0      AAAATTACAATGGTACCTCAATAGGCAGAATATCTGCATCTGACTTCGAATTCAAGGACC 120
consensus_5701#1      AAAATTACAATGGTACCTCAATAGGCAGAATATCTGCATCTGACTTCGAATTCAAGGACC 97
                      ************************************************************

consensus_5701#0      AAACACTACCGAAGTTCGCCTTTGATCACTTTAGATGCATACACATTTCACTTATCTATG 180
consensus_5701#1      AAACACTAGCGAAGTTCCCCTTTGATCACTTTAGATGCATACACATTTCACTTATCTATG 157
                      ******** ******** ******************************************

consensus_5701#0      AAAAACTAAAAACTAAAAGGGTTATCTAGGATATATGTCAGTAAGTGTGATCCCATTCGC 240
consensus_5701#1      AAAAACTAAAAACTAAAAGGGTTATCTAGGATATATGTCAGTAAGTGTGATCCCATTCGC 217
                      ************************************************************

consensus_5701#0      AGAGATATCCTCTTCATAGATCTTACCAGACCGATCGTACACATAGACGCGCTGGTCAGA 300
consensus_5701#1      AGAAATATCCTCTTCATAGATCTTACCAGACCGATCGTACACATAGACGCGCTGGTCAGA 277
                      *** ********************************************************

consensus_5701#0      TGTTTGAGAAGCTGAGTTCGAGTTTCCGTTGAAAAAAAATGCAGGCTCTGTTGGTGGCTG 360
consensus_5701#1      TGTTTGAGAAGCTGAGTTCGAGTTTCCGTTGAAAAAAAATGCAGGCTCTGTTGGTGGCTG 337
                      ************************************************************

consensus_5701#0      AAGCTCCATGTTATCCCTGGTCAGCATGAAAATGACTGATGGAATGTCCGGCCTGTCGTC 420
consensus_5701#1      AAGCTCCATGTTATCCCTGGTCAGCATGAAAATGACTGATGGAATGTCCGGCCTGTCGTC 397
                      ************************************************************

consensus_5701#0      AGGATCTGATTGGACACACAGCAGCCCAATGTGGATGCATCTTAGCGCCTGGTTTCGAAA 480
consensus_5701#1      AGGATCTGATTGGACACACAGCAGCCCAATGGGGATGCATCTTAGCGCCTGGTTTCGAAA 457
                      ******************************* ****************************

consensus_5701#0      GTGCCCTTCAAGTGATTGGTCAATTACCTGTGAAATCACACCTTCGGTCCAGTAACTCCA 540
consensus_5701#1      GTGCCCTTCAAGTGATTGGTCAATTACCTGTGAAATCACACCTTCGGTCCAGTAACTCCA 517
                      ************************************************************

consensus_5701#0      TACATCACTTAGGAGATTCACTGTGTCAGTGGTGCCATCGCCATAGCTGCAGTTCTTTCT 600
consensus_5701#1      TACATCACTTAGGAGATTCACTGTGTCAGTGGTGCCATCGCCATAGCTGCAGTTCTTTCT 577
                      ************************************************************

consensus_5701#0      CTTGGTTACAATTTCAAGTACCAGCACGCCAAAGCTGAAAATGTCAATCTTTGGTGACAC 660
consensus_5701#1      CTTGGGTACAATTTCAAGTACCAGCACGCCAAAGCTGAAAATGTCAATCTTTGGTGACAC 637
                      ***** ******************************************************

consensus_5701#0      ATTTCCATGTATTGCATACTCTGGTGCCATATATCCGTATGTTCCAACAATTCTAGTTGT 720
consensus_5701#1      ATTTCCATGTATTGCATACTCTGGTGCCATATATCCGTATGTTCCAACAATTCTAGTTGT 697
                      ************************************************************

consensus_5701#0      CTTTGTGTGAGTATGACCTCCTCCTATCAGTCTTGCTAGTCCAAAGTCTGCAATTTTTG 779
consensus_5701#1      CTTTGTGTGAGTATGACCTCCTCCTATCAGTCTTGCTAGTCCAAAGTCTGCAATTTTTG 756
                      ***********************************************************