cluster # 5705

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5705 cluster # 5705 Sequences # 3 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5705#0 length = 1988 sequences # 3
consensusID : consensus_5705#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1988
fasta sequence
                              [CAATCGCAATTCGCAAGTTGGCATCCAACTCCGTCCCGTCCCTCCCTCCCCCCCAACCCGATGGGAAACGCGGCCGCCGGCGATTCGGCCGCCGAGCTGCTGCTCCGCGCGGCGGCGCTGGTGCCGCCGGCGCACTACGCCCTCGCCGCCCTCCTCCTCGCCTGCGCCTTACTGTACCGCTTCCTCGAGCTCCACCTCATCGGCGACCTCCTCCGCGGCCTCCGCGGGGGCCGCGTCGCGCTCACCTTCCACCCCGCCTCCCACGTCTACCACCGCGTCGCATCCAAGTGCCGCTCCCTCCATGGCAGGTACTTGGCGACGCCGTGGCTTGCGAGCCCTCATTTGCAGACACTGTTCCTGAGCATCTCTGGGAGACCCCCTTCGTTCACGTATAGGAGGCAGCTGTACACAGTTCGCGATGGTGGGACCATTGCTTTGGATTGGTTACTAGCCTCTGATTGTGAAGAAGAAGATGTTGGTTTTTGTGATGGAGTTATCTCTAGGGATGATTCGACGCCTCTTGTTGTTGTGATACCTGGATTAACTAGTGATTCTACTGCTGCTTATGTGAAGCACTTGGTCTTTTCTATGGCAAGCAAAGGGTGGAATGTTGTTGTAGGCAATCATAGGGGTCTGGGTGGCATCTCCATAACTTCTGATTGCTTCTACAATGCTGGATGGACAGAAGATTTCCGTGAGATTGTCAATTACCTTCATCAGAAGTATCCACAGGCTCCATTATTTGCTGTTGGGACAAGCATAGGTGCCAATATTCTGGTTAAGTATCTCGGAGAAGAAGGTGAGGGTACCCCTGTGGCTGGTGCTGTATCTATTTGCTCACCCTGGGATCTGCTGGTGACCAACAGATTTATTCAGCGCAAGCTTGTGCAACGATGTTATGACAAAGCTCTTGCAATTGGTCTGAAAGGATATGCAAAACTACACCAACCCGTCTTGGCAAGACTTGCTAACTGGGAAGATATTAGAAAGTCACGATCTATCAGGGAATTCGACCGTCATGCCACTTGTGTGGTTGCAAAATATGAGACAGTGGACACATTCTACCGTCGGTGCAGCAGTGCAAATTACATTAGTAATGTGTCAGTGCCCCTGCTTTGTATCAGTGCTCTTGATGACCCACTTTGCACAAGGGAGGCCATTCCCTGGGACGAATGCAGGGCAAACAAAAACATTGTTTTGGCAACTGCACCTAACGGTGGCCATCTTGCCTTTTTTCAAGGGCTAACTGCTGGAAAGCTGTGGTGGGT-GGGAGCTGTTTCTGAGTTTCTACTTGCTCTACATGATAGCCCCTGCATGCATCGGCAAAAGGCACAAGAACACAGCTTGCACACTTCGTTGGAATCATCCATTGATAAAAGCCCATATGTGAATTTCATGGAAGATGGGATGGTAACTGCGGTGACAAATGATGATGCCAACAATAGTGACTCAGATAATCCTATTTCCAATGAAATGGAACTCCGCAATGGCA-TGGTTGGTGTGCAACAGGATGGAATCGCCACAGAAATACAGAATGAGTGTGACGGTAATAGGTCACAAGAGAATGTGACGCCAGCCCAAGGTCCTGTAGGATCACAGGAACAGCCAAAACAAAACATAGATAAAATCCAGGATGCTATTGCTCCTGTAAAGATATCCATTAATCAGCTCATTCGATCGCAGGGGAGATCTGTTTGGTTGCTTACTTACATTGCTTTTGTAACATCTTGGCCTTTCCTTGGTGCCCTGGGTTTTATCTTGTTTAGGAAAAAGTTCAGGAATTCTTTGCCTGCTAAACGGTTATGAAACTAAGGCAATTATGCTTACAGTACATACACATAATTGTTTCACGTGTAGTATGTAAAATGCTGGCAACAACAGTTCATATTTGTGTATCAGTTCCTAAGAAAATAAATTATATAGGTGTAACATGCTGTCATGCAATGATTCAATTCCTCTGTAATTTTCTGTAGTTGGAATTACTAAAC]

[+] EMBL AK102235             [CAATCGCAATTCGCAAGTTGGCATCCAACTCCGTCCCGTCCCTCCCTCCCCCCCAACCCGATGGGAAACGCGGCCGCCGGCGATTCGGCCGCCGAGCTGCTGCTCCGCGCGGCGGCGCTGGTGCCGCCGGCGCACTACGCCCTCGCCGCCCTCCTCCTCGCCTGCGCCTTACTGTACCGCTTCCTCGAGCTCCACCTCATCGGCGACCTCCTCCGCGGCCTCCGCGGGGGCCGCGTCGCGCTCACCTTCCACCCCGCCTCCCACGTCTACCACCGCGTCGCATCCAAGTGCCGCTCCCTCCATGGCAGGTACTTGGCGACGCCGTGGCTTGCGAGCCCTCATTTGCAGACACTGTTCCTGAGCATCTCTGGGAGACCCCCTTCGTTCACGTATAGGAGGCAGCTGTACACAGTTCGCGATGGTGGGACCATTGCTTTGGATTGGTTACTAGCCTCTGATTGTGAAGAAGAAGATGTTGGTTTTTGTGATGGAGTTATCTCTAGGGATGATTCGACGCCTCTTGTTGTTGTGATACCTGGATTAACTAGTGATTCTACTGCTGCTTATGTGAAGCACTTGGTCTTTTCTATGGCAAGCAAAGGGTGGAATGTTGTTGTAGGCAATCATAGGGGTCTGGGTGGCATCTCCATAACTTCTGATTGCTTCTACAATGCTGGATGGACAGAAGATTTCCGTGAGATTGTCAATTACCTTCATCAGAAGTATCCACAGGCTCCATTATTTGCTGTTGGGACAAGCATAGGTGCCAATATTCTGGTTAAGTATCTCGGAGAAGAAGGTGAGGGTACCCCTGTGGCTGGTGCTGTATCTATTTGCTCACCCTGGGATCTGCTGGTGACCAACAGATTTATTCAGCGCAAGCTTGTGCAACGATGTTATGACAAAGCTCTTGCAATTGGTCTGAAAGGATATGCAAAACTACACCAACCCGTCTTGGCAAGACTTGCTAACTGGGAAGATATTAGAAAGTCACGATCTATCAGGGAATTCGACCGTCATGCCACTTGTGTGGTTGCAAAATATGAGACAGTGGACACATTCTACCGTCGGTGCAGCAGTGCAAATTACATTAGTAATGTGTCAGTGCCCCTGCTTTGTATCAGTGCTCTTGATGACCCACTTTGCACAAGGGAGGCCATTCCCTGGGACGAATGCAGGGCAAACAAAAACATTGTTTTGGCAACTGCACCTAACGGTGGCCATCTTGCCTTTTTTCAAGGGCTAACTGCTGGAAAGCTGTGGTGGGT GGGAGCTGTTTCTGAGTTTCTACTTGCTCTACATGATAGCCCCTGCATGCATCGGCAAAAGGCACAAGAACACAGCTTGCACACTTCGTTGGAATCATCCATTGATAAAAGCCCATATGTGAATTTCATGGAAGATGGGATGGTAACTGCGGTGACAAATGATGATGCCAACAATAGTGACTCAGATAATCCTATTTCCAATGAAATGGAACTCCGCAATGGCA TGGTTGGTGTGCAACAGGATGGAATCGCCACAGAAATACAGAATGAGTGTGACGGTAATAGGTCACAAGAGAATGTGACGCCAGCCCAAGGTCCTGTAGGATCACAGGAACAGCCAAAACAAAACATAGATAAAATCCAGGATGCTATTGCTCCTGTAAAGATATCCATTAATCAGCTCATTCGATCGCAGGGGAGATCTGTTTGGTTGCTTACTTACATTGCTTTTGTAACATCTTGGCCTTTCCTTGGTGCCCTGGGTTTTATCTTGTTTAGGAAAAAGTTCAGGAATTCTTTGCCTGCTAAACGGTTATGAAACTAAGGCAATTATGCTTACAGTACATACACATAATTGTTTCACGTGTAGTATGTAAAATGCTGGCAACAACAGTTCATATTTGTGTATCAGTTCCTAAGAAAATAAATTATATAGGTGTAACATGCTGTCATGCAATGATTCAATTCCTCTGTAATTTTCTGTAGTTGGAATTACTAAAC]
[+] EMBL CF308183             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CTAACTGGGAAGATATTAGAAAGTCACGATCTATCAGGGAATTCGACCGTCATGCCACTTGTGTGGTTGCAAAATATGAGACAGTGGACACATTCTACCGTCGGTGCAGCAGTGCAAATTACATTAGTAATGTGTCAGTGCCCCTGCTTTGTATCAGTGCTCTTGATGACCCACTTTGCACAAGGGAGGCCATTCCCTGGGACGAATGCAGGGCAAACAAAAACATTGTTTTGGCAACTGCACCTAACGGTGGCCATCTTGCCTTTTTTCAAGGGCTAACTGCTGGAAAGCTGTGGTGGGTGGGGAGCTGTTTCTGAGTTTCTACTTGCTCTACATGATAGCCCCTGCATGCATCGGCAAAAGGCACAAGAACACAGCTTGCACACTTCGTTGGAATCATCCATTGATAAAAGCCCATATGTGAATTTCATGGAAGATGGGATGGTAACTGCGGTGACAAATGATGATGCCAACAATAGTGACTCAGATAATCCTATTTCCAATGAAATGGAACTCCGCAATGGCATTGGTTGGTGTGCAACAGGATGGAATCGCCACAGAAATACAGAATGAGTGTGACGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CF308182             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           atcCCAGGATGCTATTGCTCCTGTAAAGATATCCATTAATCAGCTCATTCGATCGCAGGGGAGATCTGTTTGGTTGCTTACTTACATTGCTTTTGTAACATCTTGGCCTTTCCTTGGTGCCCTGGGTTTTATCTTGTTTAGGAAAAAGTTCAGGAGTTCTTTGCCTGCTAAACGGTTATGAAACTAAGGCAATTATGCTTACAGTACATACACATAATTGTTTCACGTGTAGTATGTAAAATGCTGGCAACAACAGTTCATATTTGTGTATCAGTTCCTAAGAAAATAAATTATATAGGTGTAACATGCTGTCATGCAATGATTCAATTCCTCTGTAATTTTCTGTAaaaaa           ]




>consensus_5705#0
CAATCGCAATTCGCAAGTTGGCATCCAACTCCGTCCCGTCCCTCCCTCCCCCCCAACCCG
ATGGGAAACGCGGCCGCCGGCGATTCGGCCGCCGAGCTGCTGCTCCGCGCGGCGGCGCTG
GTGCCGCCGGCGCACTACGCCCTCGCCGCCCTCCTCCTCGCCTGCGCCTTACTGTACCGC
TTCCTCGAGCTCCACCTCATCGGCGACCTCCTCCGCGGCCTCCGCGGGGGCCGCGTCGCG
CTCACCTTCCACCCCGCCTCCCACGTCTACCACCGCGTCGCATCCAAGTGCCGCTCCCTC
CATGGCAGGTACTTGGCGACGCCGTGGCTTGCGAGCCCTCATTTGCAGACACTGTTCCTG
AGCATCTCTGGGAGACCCCCTTCGTTCACGTATAGGAGGCAGCTGTACACAGTTCGCGAT
GGTGGGACCATTGCTTTGGATTGGTTACTAGCCTCTGATTGTGAAGAAGAAGATGTTGGT
TTTTGTGATGGAGTTATCTCTAGGGATGATTCGACGCCTCTTGTTGTTGTGATACCTGGA
TTAACTAGTGATTCTACTGCTGCTTATGTGAAGCACTTGGTCTTTTCTATGGCAAGCAAA
GGGTGGAATGTTGTTGTAGGCAATCATAGGGGTCTGGGTGGCATCTCCATAACTTCTGAT
TGCTTCTACAATGCTGGATGGACAGAAGATTTCCGTGAGATTGTCAATTACCTTCATCAG
AAGTATCCACAGGCTCCATTATTTGCTGTTGGGACAAGCATAGGTGCCAATATTCTGGTT
AAGTATCTCGGAGAAGAAGGTGAGGGTACCCCTGTGGCTGGTGCTGTATCTATTTGCTCA
CCCTGGGATCTGCTGGTGACCAACAGATTTATTCAGCGCAAGCTTGTGCAACGATGTTAT
GACAAAGCTCTTGCAATTGGTCTGAAAGGATATGCAAAACTACACCAACCCGTCTTGGCA
AGACTTGCTAACTGGGAAGATATTAGAAAGTCACGATCTATCAGGGAATTCGACCGTCAT
GCCACTTGTGTGGTTGCAAAATATGAGACAGTGGACACATTCTACCGTCGGTGCAGCAGT
GCAAATTACATTAGTAATGTGTCAGTGCCCCTGCTTTGTATCAGTGCTCTTGATGACCCA
CTTTGCACAAGGGAGGCCATTCCCTGGGACGAATGCAGGGCAAACAAAAACATTGTTTTG
GCAACTGCACCTAACGGTGGCCATCTTGCCTTTTTTCAAGGGCTAACTGCTGGAAAGCTG
TGGTGGGTGGGAGCTGTTTCTGAGTTTCTACTTGCTCTACATGATAGCCCCTGCATGCAT
CGGCAAAAGGCACAAGAACACAGCTTGCACACTTCGTTGGAATCATCCATTGATAAAAGC
CCATATGTGAATTTCATGGAAGATGGGATGGTAACTGCGGTGACAAATGATGATGCCAAC
AATAGTGACTCAGATAATCCTATTTCCAATGAAATGGAACTCCGCAATGGCATGGTTGGT
GTGCAACAGGATGGAATCGCCACAGAAATACAGAATGAGTGTGACGGTAATAGGTCACAA
GAGAATGTGACGCCAGCCCAAGGTCCTGTAGGATCACAGGAACAGCCAAAACAAAACATA
GATAAAATCCAGGATGCTATTGCTCCTGTAAAGATATCCATTAATCAGCTCATTCGATCG
CAGGGGAGATCTGTTTGGTTGCTTACTTACATTGCTTTTGTAACATCTTGGCCTTTCCTT
GGTGCCCTGGGTTTTATCTTGTTTAGGAAAAAGTTCAGGAATTCTTTGCCTGCTAAACGG
TTATGAAACTAAGGCAATTATGCTTACAGTACATACACATAATTGTTTCACGTGTAGTAT
GTAAAATGCTGGCAACAACAGTTCATATTTGTGTATCAGTTCCTAAGAAAATAAATTATA
TAGGTGTAACATGCTGTCATGCAATGATTCAATTCCTCTGTAATTTTCTGTAGTTGGAAT
TACTAAAC
clustalw multiple alignements is not computed in this case