cluster # 5706

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Oryza sativa
cluster # 5706 cluster # 5706 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5706#0 length = 578 sequences # 1

consensus_5706#1 length = 458 sequences # 1
consensus_5706#2 length = 397 sequences # 1

consensusID : consensus_5706#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 578
fasta sequence

                              [CCAGTGGTGCTATCCACAGCCCCAGAGGATGAGCCAACTCATTGGCATCCAGACTATTCTGTACTTCCCTGATCCTATAGAGGTGAAACAAGACCAAATTATAGAAGGCTCTGTAAAAGTGTCTCAGAGTGAGGAAAACCCACGTTTTCTGAATATTCAACTAGATTGCACCACGGGAGGCCAAACATTGGTGAAAGATTATGCCATGCGATGAATGGTGTTCTTAGTTTGCTGATCTGGATTCCCCGACTTCTGATGGTAAGATCCTACAACTTGCAAGAGGGTCTCTTCCAGCAATCATGAACTGAGGTCATTGGCAATTGATGCTGAATTGTTGTATGCATGTTGATAACAGTAACGAGAATTCCTCCACTTATTTTCTTTCCTTTATTCTTTTGAGTTTTTCCTTGTGTTTATTTTTTCTAGTTTTCACTGGCGATGTAGATGAACCGAGAATGCAAATTTTCGGTTTAAGTGCAGTGGAGATAGGATTGCATTATTTCAGTTTGTCGAATGCTTTAGTTTTGTGGATGCTTTTTCGTTGGTATCTTGTCTGACTTTGATGTGCTTAAAAAAAA]

[+] EMBL AU095166             [CCAGTGGTGCTATCCACAGCCCCAGAGGATGAGCCAACTCATTGGCATCCAGACTATTCTGTACTTCCCTGATCCTATAGAGGTGAAACAAGACCAAATTATAGAAGGCTCTGTAAAAGTGTCTCAGAGTGAGGAAAACCCACGTTTTCTGAATATTCAACTAGATTGCACCACGGGAGGCCAAACATTGGTGAAAGATTATGCCATGCGATGAATGGTGTTCTTAGTTTGCTGATCTGGATTCCCCGACTTCTGATGGTAAGATCCTACAACTTGCAAGAGGGTCTCTTCCAGCAATCATGAACTGAGGTCATTGGCAATTGATGCTGAATTGTTGTATGCATGTTGATAACAGTAACGAGAATTCCTCCACTTATTTTCTTTCCTTTATTCTTTTGAGTTTTTCCTTGTGTTTATTTTTTCTAGTTTTCACTGGCGATGTAGATGAACCGAGAATGCAAATTTTCGGTTTAAGTGCAGTGGAGATAGGATTGCATTATTTCAGTTTGTCGAATGCTTTAGTTTTGTGGATGCTTTTTCGTTGGTATCTTGTCTGACTTTGATGTGCTTAAAAAAAA]




>consensus_5706#0
CCAGTGGTGCTATCCACAGCCCCAGAGGATGAGCCAACTCATTGGCATCCAGACTATTCT
GTACTTCCCTGATCCTATAGAGGTGAAACAAGACCAAATTATAGAAGGCTCTGTAAAAGT
GTCTCAGAGTGAGGAAAACCCACGTTTTCTGAATATTCAACTAGATTGCACCACGGGAGG
CCAAACATTGGTGAAAGATTATGCCATGCGATGAATGGTGTTCTTAGTTTGCTGATCTGG
ATTCCCCGACTTCTGATGGTAAGATCCTACAACTTGCAAGAGGGTCTCTTCCAGCAATCA
TGAACTGAGGTCATTGGCAATTGATGCTGAATTGTTGTATGCATGTTGATAACAGTAACG
AGAATTCCTCCACTTATTTTCTTTCCTTTATTCTTTTGAGTTTTTCCTTGTGTTTATTTT
TTCTAGTTTTCACTGGCGATGTAGATGAACCGAGAATGCAAATTTTCGGTTTAAGTGCAG
TGGAGATAGGATTGCATTATTTCAGTTTGTCGAATGCTTTAGTTTTGTGGATGCTTTTTC
GTTGGTATCTTGTCTGACTTTGATGTGCTTAAAAAAAA

consensusID : consensus_5706#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 458
fasta sequence

                              [GAGTTTGGAATCCCACTGTCGATGGTGTAATTCGGTGACCGAAAAGGGCGCCCGAAGGAATCAGAAGAGTCCCAGTGGTGGCTAATCCACAGCCCCCCAGAGGATGAGCCCAACTCATTGGCATCAGACTATTGCTGGTACTTCCCTGGATCCTATAGAGGTGTAAACAAGACCAAATTATAGAAGGCTCTGTAAAAGTGTCTCAGAGTGAGGAAAACCCACGTTTTCTGAATATTCAACTAGATTGCACCACGGGAGGCCACAACATTGGTGAAAGATTATGCCATGCGATGAATGGTGTTCTTAGTTTGCTGATCTGGATTCCCCGACTTCTGATGTCAGGATGAGAGATAAGGGTAAAGTGAGAAGATGGGAAAAATGGAGACGAGCTGTTTTTCTCATGAACCAAAAGGCTACAGCATAACCTTTGCCTGCTGTGACATTGAGCTTTTACTTTC]

[-] EMBL BU667083             [GAGTTTGGAATCCCACTGTCGATGGTGTAATTCGGTGACCGAAAAGGGCGCCCGAAGGAATCAGAAGAGTCCCAGTGGTGGCTAATCCACAGCCCCCCAGAGGATGAGCCCAACTCATTGGCATCAGACTATTGCTGGTACTTCCCTGGATCCTATAGAGGTGTAAACAAGACCAAATTATAGAAGGCTCTGTAAAAGTGTCTCAGAGTGAGGAAAACCCACGTTTTCTGAATATTCAACTAGATTGCACCACGGGAGGCCACAACATTGGTGAAAGATTATGCCATGCGATGAATGGTGTTCTTAGTTTGCTGATCTGGATTCCCCGACTTCTGATGTCAGGATGAGAGATAAGGGTAAAGTGAGAAGATGGGAAAAATGGAGACGAGCTGTTTTTCTCATGAACCAAAAGGCTACAGCATAACCTTTGCCTGCTGTGACATTGAGCTTTTACTTTC]




>consensus_5706#1
GAGTTTGGAATCCCACTGTCGATGGTGTAATTCGGTGACCGAAAAGGGCGCCCGAAGGAA
TCAGAAGAGTCCCAGTGGTGGCTAATCCACAGCCCCCCAGAGGATGAGCCCAACTCATTG
GCATCAGACTATTGCTGGTACTTCCCTGGATCCTATAGAGGTGTAAACAAGACCAAATTA
TAGAAGGCTCTGTAAAAGTGTCTCAGAGTGAGGAAAACCCACGTTTTCTGAATATTCAAC
TAGATTGCACCACGGGAGGCCACAACATTGGTGAAAGATTATGCCATGCGATGAATGGTG
TTCTTAGTTTGCTGATCTGGATTCCCCGACTTCTGATGTCAGGATGAGAGATAAGGGTAA
AGTGAGAAGATGGGAAAAATGGAGACGAGCTGTTTTTCTCATGAACCAAAAGGCTACAGC
ATAACCTTTGCCTGCTGTGACATTGAGCTTTTACTTTC

consensusID : consensus_5706#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence

                              [AAACATTGGTGAAAGATTATGCCATGCGATGAATGGTGTTCTTAGTTTGCTGATCTGGATTCCCCGACTTCTNATGGTAAGATCCTACAACTTGCAANAGGGTCTCTTCCAGCAATCATGAACTGAGGTCATTGGCAATTGATGCTGAATTGTTGTATGCATGTTGATANCAGTAACGAGAATTCCTCCNCTTATTTTCTTTCCTTTATTCTTTTGAGTTTTTCCTTGNGTTTATTTTTTCTAGTTTTCNCTGGCNATGTANATGAACCGAGAATGCAAATTTTCGGTTTAAGTGCAGTGGANATAGGATTGCATTATTTCAGTTTGTCGAATGCTTTAGTTTTGTGGATGCTTTTTCGTTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU093213             [AAACATTGGTGAAAGATTATGCCATGCGATGAATGGTGTTCTTAGTTTGCTGATCTGGATTCCCCGACTTCTNATGGTAAGATCCTACAACTTGCAANAGGGTCTCTTCCAGCAATCATGAACTGAGGTCATTGGCAATTGATGCTGAATTGTTGTATGCATGTTGATANCAGTAACGAGAATTCCTCCNCTTATTTTCTTTCCTTTATTCTTTTGAGTTTTTCCTTGNGTTTATTTTTTCTAGTTTTCNCTGGCNATGTANATGAACCGAGAATGCAAATTTTCGGTTTAAGTGCAGTGGANATAGGATTGCATTATTTCAGTTTGTCGAATGCTTTAGTTTTGTGGATGCTTTTTCGTTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_5706#2
AAACATTGGTGAAAGATTATGCCATGCGATGAATGGTGTTCTTAGTTTGCTGATCTGGAT
TCCCCGACTTCTNATGGTAAGATCCTACAACTTGCAANAGGGTCTCTTCCAGCAATCATG
AACTGAGGTCATTGGCAATTGATGCTGAATTGTTGTATGCATGTTGATANCAGTAACGAG
AATTCCTCCNCTTATTTTCTTTCCTTTATTCTTTTGAGTTTTTCCTTGNGTTTATTTTTT
CTAGTTTTCNCTGGCNATGTANATGAACCGAGAATGCAAATTTTCGGTTTAAGTGCAGTG
GANATAGGATTGCATTATTTCAGTTTGTCGAATGCTTTAGTTTTGTGGATGCTTTTTCGT
TGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5706#0      CCAGTGGTGCTATCCACAGCCCCAGAGGATGAGCCAACTCATTGGCATCCAGACTATTCT 60
consensus_5706#2      ------------------------------------------------------------
consensus_5706#1      ------------------------------------------------------------
                                                                                  

consensus_5706#0      GTACTTCCCTGATCCTATAGAGGTGAAACAAGACCAAATTATAGAAGGCTCTGTAAAAGT 120
consensus_5706#2      ------------------------------------------------------------
consensus_5706#1      ------------------------------------------------------------
                                                                                  

consensus_5706#0      GTCTCAGAGTGAGGAAAACCCACGTTTTCTGAATATTCAACTAGATTGCACCACGGGAGG 180
consensus_5706#2      ------------------------------------------------------------
consensus_5706#1      ------------------------------------------------------------
                                                                                  

consensus_5706#0      CCAAACATTGGTGAAAGATTATGCCATGCGATGAATGGTGTTCTTAGTTTGCTGATCTGG 240
consensus_5706#2      --AAACATTGGTGAAAGATTATGCCATGCGATGAATGGTGTTCTTAGTTTGCTGATCTGG 58
consensus_5706#1      -------------GAGTTTGGAATCCCACTGTCGATGGTGTAATTCGGTGACCGAAAAGG 47
                                    *   *     *   *  *  *******  ** * *  * **   **

consensus_5706#0      ATTCCCCGACTTCTGATGGTAAGATCCTACAACTTGCAAGAGGGTCTCTTCCAGCAATCA 300
consensus_5706#2      ATTCCCCGACTTCTNATGGTAAGATCCTACAACTTGCAANAGGGTCTCTTCCAGCAATCA 118
consensus_5706#1      GCGCCCGAAGGAATCA--GAAGAGTCCCAGTGGTGGCTAATCCACAGCCCCCCAGAGG-A 104
                         ***  *    * *  * *   *** *    * ** *        *  **   *   *

consensus_5706#0      TGAACTGAGGTCATTGGCA----ATTGATGCTGAATTGTTGTATGCATGTTGATAACAGT 356
consensus_5706#2      TGAACTGAGGTCATTGGCA----ATTGATGCTGAATTGTTGTATGCATGTTGATANCAGT 174
consensus_5706#1      TGAGCCCAACTCATTGGCATCAGACTATTGCTGG-TACTTCCCTGGATCCT-ATAGAGGT 162
                      *** *  *  *********    * *  *****  *  **   ** **  * ***   **

consensus_5706#0      AACGAGAATTCCTCCACTTATTTTCTTTCCTTTATTCTTTTGAGTTTTTCCTTGTGTTTA 416
consensus_5706#2      AACGAGAATTCCTCCNCTTATTTTCTTTCCTTTATTCTTTTGAGTTTTTCCTTGNGTTTA 234
consensus_5706#1      GTAAACAAGACCAAATTATAGAAGGCTCTGTAAAAGTGTCTCAGAGTGAGGA-AAACCCA 221
                          * **  **      **      *   *  *    * * **  *            *

consensus_5706#0      TTTTTTCTAGTTTTCACTGGCGATGTAGATGAACCGAGAATGCAAATTTTCGGTTTAAGT 476
consensus_5706#2      TTTTTTCTAGTTTTCNCTGGCNATGTANATGAACCGAGAATGCAAATTTTCGGTTTAAGT 294
consensus_5706#1      CGTTTTCTGAATATTCAACTAGAT-TGCACCACGGGAGGCCACAACATTGGTGAAAGATT 280
                        ******   * *        ** *  *  *   ***    ***  **   *    * *

consensus_5706#0      GCAGTGGAGATAGGATTGCATTATTTCAGTTTGTCGAATGCTTTAGTTTTGTGGATGCTT 536
consensus_5706#2      GCAGTGGANATAGGATTGCATTATTTCAGTTTGTCGAATGCTTTAGTTTTGTGGATGCTT 354
consensus_5706#1      ATGCCATGCGATGAATGGTGTTCTT--AGTTTGCTGA---TCTGGATTCCCCGACTTCTG 335
                                  * ** *  ** **  ******  **     *   **    *  * ** 

consensus_5706#0      TTTCGTTGGTATCTTGTCTGACTTTGATGTGCTTAAAAAAAA------------------ 578
consensus_5706#2      TTTCGTTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------- 397
consensus_5706#1      ATGTCAGGATGAGAGATAAGGGTAAAGTGAGAAGATGGGAAAAATGGAGACGAGCTGTTT 395
                       *     * *                        *    ***                  

consensus_5706#0      ------------------------------------------------------------
consensus_5706#2      ------------------------------------------------------------
consensus_5706#1      TTCTCATGAACCAAAAGGCTACAGCATAACCTTTGCCTGCTGTGACATTGAGCTTTTACT 455
                                                                                  

consensus_5706#0      ---
consensus_5706#2      ---
consensus_5706#1      TTC 458