These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5709#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1650 fasta sequence [AGGTGGAGTTGGACGCGGCGGCGGAGGTGGAGATGGCGGCGGCGGCGGCGGCGACGGCGGAGGAGTACGAGGAGATGCTCCGGGTGGTGGAGGCGATCGCCACGCGCATCCGGTGGCGCCTCCGGCCCCACTCCAAGCGCCGCCTCCTCAACGATATACTGTTCCTCTGCAGTGGGTTGCGGCCTGTGGTACTGATGGATTACGGTGGCACAATGCCTGAACTACAGGACAATCTCTGCTCCCTGCTGCATCATGCTCGGCAGGAGTCAAGCATGTTGAGTCCACTAAGGCTGATGGTTATTAAAGATATGCTTTACTTGATTCATGCAAAGGGTCTTGCTGAGCATGCTTCACCAAGTGCAAGGTCACAGCACAAGCTCGCTTTTGTGGACCTAGAGAAAAGCTGTAGCAAAGTCTTTGCCTTCTCAGATCCTGTCTTTCTATTTTCTCTGTCCTATGTCCTATTCTTCTTTCCTTTGTTGTATTACTGAATGCTGTCTTGGTGCAGCTGCTTTCAGAAACCGAAGAGAATGGTGCTCTGCATGAGTTTTTATCCATCCAAGACCTGTTTTCAGCCAACTTCCCTGTAGATGCAGATGTAGATCTGCCTATTATACAACCTGAAGCAAAAGGGCAGATGTCAGAAATTCCAGAGGGAACCACTATGGATAATTTTGGCTTTCGGATTGCTGACGGAACATCACTGGTTATTGATCTGAGCACCTTCCTTGAGAGTGCCCAAATTGCATTGCCTTCTTTGAATGGGTAAATTCTAGTTCTATATATTATTGAACCCACAACCATTCAGTGTTGAAAGTACCTTTTTTATTGGTTCAGTTTTCTGGTTCTTTTAACATCAAAAGGAGATGTTTGCTATGTTGGTGAAGTTAAGCAGAAGCACTTAAATTTGTCTATATTAATATTTAATCATATTGCAATGTTTTTAGGTGGCTTTTGGGTTATCCTGTAACATATTTGTTTTGCAATGAAAGTGCGGAAACTGCCACACAAAATCTCTCCAAGCACTCTCTGCATATCTATAGGATATATGCTGTGAGGTTTGGCATTTTAGACTGACCCACTTGGAGTTTTCTTTTGGGATGAGAATTCTTTGAAGCTTACTTGGAATATCTTTACTGCAGATGTCGTCAATCAGCTGCCAAACAGTCAGAACAGGAACTGATGAGTTTTTCAGTTCCTTGTGACATGAGCACCAAACGTGATGAAGAACCATGGGCGAAATCATTTCTGGCACACATGAATGAGAAGATCAAGCAATGCAATCATGTCTGGGCATCAGTTCGGATGGAGATCGAGGTTTTCCATAGCCAATCAGGACTCATTGTTTTGTAGTTCAGATCAGCAAGCCTTTGACTATATGATACCTGCAAAGTTGGCATTCACTGATCCTACAAGTTGCATCTATACCACCTGTAAAATGGTCCAAGTTGGTGAAGCTTCTTTCAGTTCATTCGGCATTCAGGTGGAATCAAGGAGGCAACGATGAATAGAGATATATATCATGATAAATTGATGATCGCATATATAGATCTGTGCCTGCAACATAGCAGAGAGATAATTTGTTCTGCAATGTTCAACGACGAACATATCCTCTGTAGTCTGTACCACAGATGTTGCGAATCACAACTA] [+] EMBL AK102157 [AGGTGGAGTTGGACGCGGCGGCGGAGGTGGAGATGGCGGCGGCGGCGGCGGCGACGGCGGAGGAGTACGAGGAGATGCTCCGGGTGGTGGAGGCGATCGCCACGCGCATCCGGTGGCGCCTCCGGCCCCACTCCAAGCGCCGCCTCCTCAACGATATACTGTTCCTCTGCAGTGGGTTGCGGCCTGTGGTACTGATGGATTACGGTGGCACAATGCCTGAACTACAGGACAATCTCTGCTCCCTGCTGCATCATGCTCGGCAGGAGTCAAGCATGTTGAGTCCACTAAGGCTGATGGTTATTAAAGATATGCTTTACTTGATTCATGCAAAGGGTCTTGCTGAGCATGCTTCACCAAGTGCAAGGTCACAGCACAAGCTCGCTTTTGTGGACCTAGAGAAAAGCTGTAGCAAAGTCTTTGCCTTCTCAGATCCTGTCTTTCTATTTTCTCTGTCCTATGTCCTATTCTTCTTTCCTTTGTTGTATTACTGAATGCTGTCTTGGTGCAGCTGCTTTCAGAAACCGAAGAGAATGGTGCTCTGCATGAGTTTTTATCCATCCAAGACCTGTTTTCAGCCAACTTCCCTGTAGATGCAGATGTAGATCTGCCTATTATACAACCTGAAGCAAAAGGGCAGATGTCAGAAATTCCAGAGGGAACCACTATGGATAATTTTGGCTTTCGGATTGCTGACGGAACATCACTGGTTATTGATCTGAGCACCTTCCTTGAGAGTGCCCAAATTGCATTGCCTTCTTTGAATGGGTAAATTCTAGTTCTATATATTATTGAACCCACAACCATTCAGTGTTGAAAGTACCTTTTTTATTGGTTCAGTTTTCTGGTTCTTTTAACATCAAAAGGAGATGTTTGCTATGTTGGTGAAGTTAAGCAGAAGCACTTAAATTTGTCTATATTAATATTTAATCATATTGCAATGTTTTTAGGTGGCTTTTGGGTTATCCTGTAACATATTTGTTTTGCAATGAAAGTGCGGAAACTGCCACACAAAATCTCTCCAAGCACTCTCTGCATATCTATAGGATATATGCTGTGAGGTTTGGCATTTTAGACTGACCCACTTGGAGTTTTCTTTTGGGATGAGAATTCTTTGAAGCTTACTTGGAATATCTTTACTGCAGATGTCGTCAATCAGCTGCCAAACAGTCAGAACAGGAACTGATGAGTTTTTCAGTTCCTTGTGACATGAGCACCAAACGTGATGAAGAACCATGGGCGAAATCATTTCTGGCACACATGAATGAGAAGATCAAGCAATGCAATCATGTCTGGGCATCAGTTCGGATGGAGATCGAGGTTTTCCATAGCCAATCAGGACTCATTGTTTTGTAGTTCAGATCAGCAAGCCTTTGACTATATGATACCTGCAAAGTTGGCATTCACTGATCCTACAAGTTGCATCTATACCACCTGTAAAATGGTCCAAGTTGGTGAAGCTTCTTTCAGTTCATTCGGCATTCAGGTGGAATCAAGGAGGCAACGATGAATAGAGATATATATCATGATAAATTGATGATCGCATATATAGATCTGTGCCTGCAACATAGCAGAGAGATAATTTGTTCTGCAATGTTCAACGACGAACATATCCTCTGTAGTCTGTACCACAGATGTTGCGAATCACAACTA] [+] EMBL CB653085 [ CGGCCCTGGTGGAGATGGCGGCGGCGGCGGCGGCGACGGCGGAGGAGTACGAGGAGATGCTCCGGGTGGTGGAGGCGATCGCCACGCGCATCCGGTGGCGCCTCCGGCCCCACTCCAAGCGCCGCCTCCTCAACGATATACTGTTCCTCTGCAGTGGGTTGCGGCCTGTGGTACTGATGGATTACGGTGGCACAATGCCTGAACTACAGGACAATCTCTGCTCCCTGCTGCATCATGCTCGGCAGGAGTCAAGCATGTTGAGTCCACTAAGGCTGATGGTTATTAAAGATATGCTTTACTTGATTCATGCAAAGGGTCTTGCTGAGCATGCTTCACCAAGTGCAAGGTCACAGCACAAGCTCGCTTTTGTGGACCTAGAGAAAAGCTGTAGCAAAGTCTTTGCCTTCTCAGATCCTGTCTTTCTATTTTCTCTGTCCTATGTCCTATTCTTCTTTCCTTTGTTGTATTACTGAATGCTGTCTTGGTGCAGCTGCTTTCAGAAACCGAAGAGAATGGTGCTCTGCATGAGTTTTTATCCATCCAAGACCTGTTTTCAGCCAACTTCCCTGTAGATGCAGATGTAGATCTGCCTATTATACCACCTGAAGCAAAAGGGCAGATGTCAGAAATTCCAGAGGGAACCACTATGGAT ] consensusID : consensus_5709#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [TTTGGCTTTCGGATTGCTGACGGAACATCACTGGTTATTGATCTGAGCACCTTCCTTGAGAGTGCCCAAATTGCATTGCCTTCTTTGAATGGGTGGCTTTTGGGTTATCCTGTAACATATTTGTTTTGCAATGAAAGTGCGGAAACTGCCACACAAAATCTCTCCAAGCACTCTCTGCATATCTATAGGATATATGCTGTGAGATGTCGTCAATCAGCTGCCAAACAGTCAGAACAGGAACTGATGAGTTTTTCAGTTCCTTGTGACATGAGCACCAAACGTGATGAAGAACCATGGGCGAAATCATTTCTGGCACACATGAATGAGAAGATCAAGCAATGCAATCATGTCTGGGCATCAGTTCGGATGGAGATCGAGGTTTTCCATAGCCAATCAGGACTCATTGTTTTGTAGTTCAGATCAGCAAGCCTTTGACTATATGATACCTGCAAAGTTGGCATTCACTGATCCTACAAGTTGCATCTATACCACCTGTAAAATGGTCCAAGTTGGTGAAGCTTCTTTCAGTTCATTCGGCATTCAGGTGGAA] [-] EMBL CB653086 [TTTGGCTTTCGGATTGCTGACGGAACATCACTGGTTATTGATCTGAGCACCTTCCTTGAGAGTGCCCAAATTGCATTGCCTTCTTTGAATGGGTGGCTTTTGGGTTATCCTGTAACATATTTGTTTTGCAATGAAAGTGCGGAAACTGCCACACAAAATCTCTCCAAGCACTCTCTGCATATCTATAGGATATATGCTGTGAGATGTCGTCAATCAGCTGCCAAACAGTCAGAACAGGAACTGATGAGTTTTTCAGTTCCTTGTGACATGAGCACCAAACGTGATGAAGAACCATGGGCGAAATCATTTCTGGCACACATGAATGAGAAGATCAAGCAATGCAATCATGTCTGGGCATCAGTTCGGATGGAGATCGAGGTTTTCCATAGCCAATCAGGACTCATTGTTTTGTAGTTCAGATCAGCAAGCCTTTGACTATATGATACCTGCAAAGTTGGCATTCACTGATCCTACAAGTTGCATCTATACCACCTGTAAAATGGTCCAAGTTGGTGAAGCTTCTTTCAGTTCATTCGGCATTCAGGTGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5709#0 AGGTGGAGTTGGACGCGGCGGCGGAGGTGGAGATGGCGGCGGCGGCGGCGGCGACGGCGG 60 consensus_5709#1 ------------------------------------------------------------ consensus_5709#0 AGGAGTACGAGGAGATGCTCCGGGTGGTGGAGGCGATCGCCACGCGCATCCGGTGGCGCC 120 consensus_5709#1 ------------------------------------------------------------ consensus_5709#0 TCCGGCCCCACTCCAAGCGCCGCCTCCTCAACGATATACTGTTCCTCTGCAGTGGGTTGC 180 consensus_5709#1 ------------------------------------------------------------ consensus_5709#0 GGCCTGTGGTACTGATGGATTACGGTGGCACAATGCCTGAACTACAGGACAATCTCTGCT 240 consensus_5709#1 ------------------------------------------------------------ consensus_5709#0 CCCTGCTGCATCATGCTCGGCAGGAGTCAAGCATGTTGAGTCCACTAAGGCTGATGGTTA 300 consensus_5709#1 ------------------------------------------------------------ consensus_5709#0 TTAAAGATATGCTTTACTTGATTCATGCAAAGGGTCTTGCTGAGCATGCTTCACCAAGTG 360 consensus_5709#1 ------------------------------------------------------------ consensus_5709#0 CAAGGTCACAGCACAAGCTCGCTTTTGTGGACCTAGAGAAAAGCTGTAGCAAAGTCTTTG 420 consensus_5709#1 ------------------------------------------------------------ consensus_5709#0 CCTTCTCAGATCCTGTCTTTCTATTTTCTCTGTCCTATGTCCTATTCTTCTTTCCTTTGT 480 consensus_5709#1 ------------------------------------------------------------ consensus_5709#0 TGTATTACTGAATGCTGTCTTGGTGCAGCTGCTTTCAGAAACCGAAGAGAATGGTGCTCT 540 consensus_5709#1 ------------------------------------------------------------ consensus_5709#0 GCATGAGTTTTTATCCATCCAAGACCTGTTTTCAGCCAACTTCCCTGTAGATGCAGATGT 600 consensus_5709#1 ------------------------------------------------------------ consensus_5709#0 AGATCTGCCTATTATACAACCTGAAGCAAAAGGGCAGATGTCAGAAATTCCAGAGGGAAC 660 consensus_5709#1 ------------------------------------------------------------ consensus_5709#0 CACTATGGATAATTTTGGCTTTCGGATTGCTGACGGAACATCACTGGTTATTGATCTGAG 720 consensus_5709#1 ------------------------------------------------------------ consensus_5709#0 CACCTTCCTTGAGAGTGCCCAAATTGCATTGCCTTCTTTGAATGGGTAAATTCTAGTTCT 780 consensus_5709#1 ------------------------------------------------------------ consensus_5709#0 ATATATTATTGAACCCACAACCATTCAGTGTTGAAAGTACCTTTTTTATTGGTTCAGTTT 840 consensus_5709#1 ------------------------------------------------------------ consensus_5709#0 TCTGGTTCTTTTAACATCAAAAGGAGATGTTTGCTATGTTGGTGAAGTTAAGCAGAAGCA 900 consensus_5709#1 TTTGGCTTTCGGATTGCTGACGGAACATCACTGGT-TATTGAT----CTGAGCACCTTC- 54 * *** * * * * * * ** ** * * *** * * **** * consensus_5709#0 CTTAAATTTGTCTATATTAATATTTAATCATATTGCAATGTTTTTAGGTGGCTTTTGGGT 960 consensus_5709#1 CTTGAGAGTGCCCAAATTG-CATT--GCCTTCTTTGAATG------GGTGGCTTTTGGGT 105 *** * ** * * *** *** * * ** **** ************** consensus_5709#0 TATCCTGTAACATATTTGTTTTGCAATGAAAGTGCGGAAACTGCCACACAAAATCTCTCC 1020 consensus_5709#1 TATCCTGTAACATATTTGTTTTGCAATGAAAGTGCGGAAACTGCCACACAAAATCTCTCC 165 ************************************************************ consensus_5709#0 AAGCACTCTCTGCATATCTATAGGATATATGCTGTGAGGTTTGGCATTTTAGACTGACCC 1080 consensus_5709#1 AAGCACTCTCTGCATATCTATAGGATATATGCTGTGAG---------------------- 203 ************************************** consensus_5709#0 ACTTGGAGTTTTCTTTTGGGATGAGAATTCTTTGAAGCTTACTTGGAATATCTTTACTGC 1140 consensus_5709#1 ------------------------------------------------------------ consensus_5709#0 AGATGTCGTCAATCAGCTGCCAAACAGTCAGAACAGGAACTGATGAGTTTTTCAGTTCCT 1200 consensus_5709#1 --ATGTCGTCAATCAGCTGCCAAACAGTCAGAACAGGAACTGATGAGTTTTTCAGTTCCT 261 ********************************************************** consensus_5709#0 TGTGACATGAGCACCAAACGTGATGAAGAACCATGGGCGAAATCATTTCTGGCACACATG 1260 consensus_5709#1 TGTGACATGAGCACCAAACGTGATGAAGAACCATGGGCGAAATCATTTCTGGCACACATG 321 ************************************************************ consensus_5709#0 AATGAGAAGATCAAGCAATGCAATCATGTCTGGGCATCAGTTCGGATGGAGATCGAGGTT 1320 consensus_5709#1 AATGAGAAGATCAAGCAATGCAATCATGTCTGGGCATCAGTTCGGATGGAGATCGAGGTT 381 ************************************************************ consensus_5709#0 TTCCATAGCCAATCAGGACTCATTGTTTTGTAGTTCAGATCAGCAAGCCTTTGACTATAT 1380 consensus_5709#1 TTCCATAGCCAATCAGGACTCATTGTTTTGTAGTTCAGATCAGCAAGCCTTTGACTATAT 441 ************************************************************ consensus_5709#0 GATACCTGCAAAGTTGGCATTCACTGATCCTACAAGTTGCATCTATACCACCTGTAAAAT 1440 consensus_5709#1 GATACCTGCAAAGTTGGCATTCACTGATCCTACAAGTTGCATCTATACCACCTGTAAAAT 501 ************************************************************ consensus_5709#0 GGTCCAAGTTGGTGAAGCTTCTTTCAGTTCATTCGGCATTCAGGTGGAATCAAGGAGGCA 1500 consensus_5709#1 GGTCCAAGTTGGTGAAGCTTCTTTCAGTTCATTCGGCATTCAGGTGGAA----------- 550 ************************************************* consensus_5709#0 ACGATGAATAGAGATATATATCATGATAAATTGATGATCGCATATATAGATCTGTGCCTG 1560 consensus_5709#1 ------------------------------------------------------------ consensus_5709#0 CAACATAGCAGAGAGATAATTTGTTCTGCAATGTTCAACGACGAACATATCCTCTGTAGT 1620 consensus_5709#1 ------------------------------------------------------------ consensus_5709#0 CTGTACCACAGATGTTGCGAATCACAACTA 1650 consensus_5709#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||