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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5709#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1650 fasta sequence
[AGGTGGAGTTGGACGCGGCGGCGGAGGTGGAGATGGCGGCGGCGGCGGCGGCGACGGCGGAGGAGTACGAGGAGATGCTCCGGGTGGTGGAGGCGATCGCCACGCGCATCCGGTGGCGCCTCCGGCCCCACTCCAAGCGCCGCCTCCTCAACGATATACTGTTCCTCTGCAGTGGGTTGCGGCCTGTGGTACTGATGGATTACGGTGGCACAATGCCTGAACTACAGGACAATCTCTGCTCCCTGCTGCATCATGCTCGGCAGGAGTCAAGCATGTTGAGTCCACTAAGGCTGATGGTTATTAAAGATATGCTTTACTTGATTCATGCAAAGGGTCTTGCTGAGCATGCTTCACCAAGTGCAAGGTCACAGCACAAGCTCGCTTTTGTGGACCTAGAGAAAAGCTGTAGCAAAGTCTTTGCCTTCTCAGATCCTGTCTTTCTATTTTCTCTGTCCTATGTCCTATTCTTCTTTCCTTTGTTGTATTACTGAATGCTGTCTTGGTGCAGCTGCTTTCAGAAACCGAAGAGAATGGTGCTCTGCATGAGTTTTTATCCATCCAAGACCTGTTTTCAGCCAACTTCCCTGTAGATGCAGATGTAGATCTGCCTATTATACAACCTGAAGCAAAAGGGCAGATGTCAGAAATTCCAGAGGGAACCACTATGGATAATTTTGGCTTTCGGATTGCTGACGGAACATCACTGGTTATTGATCTGAGCACCTTCCTTGAGAGTGCCCAAATTGCATTGCCTTCTTTGAATGGGTAAATTCTAGTTCTATATATTATTGAACCCACAACCATTCAGTGTTGAAAGTACCTTTTTTATTGGTTCAGTTTTCTGGTTCTTTTAACATCAAAAGGAGATGTTTGCTATGTTGGTGAAGTTAAGCAGAAGCACTTAAATTTGTCTATATTAATATTTAATCATATTGCAATGTTTTTAGGTGGCTTTTGGGTTATCCTGTAACATATTTGTTTTGCAATGAAAGTGCGGAAACTGCCACACAAAATCTCTCCAAGCACTCTCTGCATATCTATAGGATATATGCTGTGAGGTTTGGCATTTTAGACTGACCCACTTGGAGTTTTCTTTTGGGATGAGAATTCTTTGAAGCTTACTTGGAATATCTTTACTGCAGATGTCGTCAATCAGCTGCCAAACAGTCAGAACAGGAACTGATGAGTTTTTCAGTTCCTTGTGACATGAGCACCAAACGTGATGAAGAACCATGGGCGAAATCATTTCTGGCACACATGAATGAGAAGATCAAGCAATGCAATCATGTCTGGGCATCAGTTCGGATGGAGATCGAGGTTTTCCATAGCCAATCAGGACTCATTGTTTTGTAGTTCAGATCAGCAAGCCTTTGACTATATGATACCTGCAAAGTTGGCATTCACTGATCCTACAAGTTGCATCTATACCACCTGTAAAATGGTCCAAGTTGGTGAAGCTTCTTTCAGTTCATTCGGCATTCAGGTGGAATCAAGGAGGCAACGATGAATAGAGATATATATCATGATAAATTGATGATCGCATATATAGATCTGTGCCTGCAACATAGCAGAGAGATAATTTGTTCTGCAATGTTCAACGACGAACATATCCTCTGTAGTCTGTACCACAGATGTTGCGAATCACAACTA]
[+] EMBL AK102157 [AGGTGGAGTTGGACGCGGCGGCGGAGGTGGAGATGGCGGCGGCGGCGGCGGCGACGGCGGAGGAGTACGAGGAGATGCTCCGGGTGGTGGAGGCGATCGCCACGCGCATCCGGTGGCGCCTCCGGCCCCACTCCAAGCGCCGCCTCCTCAACGATATACTGTTCCTCTGCAGTGGGTTGCGGCCTGTGGTACTGATGGATTACGGTGGCACAATGCCTGAACTACAGGACAATCTCTGCTCCCTGCTGCATCATGCTCGGCAGGAGTCAAGCATGTTGAGTCCACTAAGGCTGATGGTTATTAAAGATATGCTTTACTTGATTCATGCAAAGGGTCTTGCTGAGCATGCTTCACCAAGTGCAAGGTCACAGCACAAGCTCGCTTTTGTGGACCTAGAGAAAAGCTGTAGCAAAGTCTTTGCCTTCTCAGATCCTGTCTTTCTATTTTCTCTGTCCTATGTCCTATTCTTCTTTCCTTTGTTGTATTACTGAATGCTGTCTTGGTGCAGCTGCTTTCAGAAACCGAAGAGAATGGTGCTCTGCATGAGTTTTTATCCATCCAAGACCTGTTTTCAGCCAACTTCCCTGTAGATGCAGATGTAGATCTGCCTATTATACAACCTGAAGCAAAAGGGCAGATGTCAGAAATTCCAGAGGGAACCACTATGGATAATTTTGGCTTTCGGATTGCTGACGGAACATCACTGGTTATTGATCTGAGCACCTTCCTTGAGAGTGCCCAAATTGCATTGCCTTCTTTGAATGGGTAAATTCTAGTTCTATATATTATTGAACCCACAACCATTCAGTGTTGAAAGTACCTTTTTTATTGGTTCAGTTTTCTGGTTCTTTTAACATCAAAAGGAGATGTTTGCTATGTTGGTGAAGTTAAGCAGAAGCACTTAAATTTGTCTATATTAATATTTAATCATATTGCAATGTTTTTAGGTGGCTTTTGGGTTATCCTGTAACATATTTGTTTTGCAATGAAAGTGCGGAAACTGCCACACAAAATCTCTCCAAGCACTCTCTGCATATCTATAGGATATATGCTGTGAGGTTTGGCATTTTAGACTGACCCACTTGGAGTTTTCTTTTGGGATGAGAATTCTTTGAAGCTTACTTGGAATATCTTTACTGCAGATGTCGTCAATCAGCTGCCAAACAGTCAGAACAGGAACTGATGAGTTTTTCAGTTCCTTGTGACATGAGCACCAAACGTGATGAAGAACCATGGGCGAAATCATTTCTGGCACACATGAATGAGAAGATCAAGCAATGCAATCATGTCTGGGCATCAGTTCGGATGGAGATCGAGGTTTTCCATAGCCAATCAGGACTCATTGTTTTGTAGTTCAGATCAGCAAGCCTTTGACTATATGATACCTGCAAAGTTGGCATTCACTGATCCTACAAGTTGCATCTATACCACCTGTAAAATGGTCCAAGTTGGTGAAGCTTCTTTCAGTTCATTCGGCATTCAGGTGGAATCAAGGAGGCAACGATGAATAGAGATATATATCATGATAAATTGATGATCGCATATATAGATCTGTGCCTGCAACATAGCAGAGAGATAATTTGTTCTGCAATGTTCAACGACGAACATATCCTCTGTAGTCTGTACCACAGATGTTGCGAATCACAACTA]
[+] EMBL CB653085 [ CGGCCCTGGTGGAGATGGCGGCGGCGGCGGCGGCGACGGCGGAGGAGTACGAGGAGATGCTCCGGGTGGTGGAGGCGATCGCCACGCGCATCCGGTGGCGCCTCCGGCCCCACTCCAAGCGCCGCCTCCTCAACGATATACTGTTCCTCTGCAGTGGGTTGCGGCCTGTGGTACTGATGGATTACGGTGGCACAATGCCTGAACTACAGGACAATCTCTGCTCCCTGCTGCATCATGCTCGGCAGGAGTCAAGCATGTTGAGTCCACTAAGGCTGATGGTTATTAAAGATATGCTTTACTTGATTCATGCAAAGGGTCTTGCTGAGCATGCTTCACCAAGTGCAAGGTCACAGCACAAGCTCGCTTTTGTGGACCTAGAGAAAAGCTGTAGCAAAGTCTTTGCCTTCTCAGATCCTGTCTTTCTATTTTCTCTGTCCTATGTCCTATTCTTCTTTCCTTTGTTGTATTACTGAATGCTGTCTTGGTGCAGCTGCTTTCAGAAACCGAAGAGAATGGTGCTCTGCATGAGTTTTTATCCATCCAAGACCTGTTTTCAGCCAACTTCCCTGTAGATGCAGATGTAGATCTGCCTATTATACCACCTGAAGCAAAAGGGCAGATGTCAGAAATTCCAGAGGGAACCACTATGGAT ]
consensusID : consensus_5709#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence
[TTTGGCTTTCGGATTGCTGACGGAACATCACTGGTTATTGATCTGAGCACCTTCCTTGAGAGTGCCCAAATTGCATTGCCTTCTTTGAATGGGTGGCTTTTGGGTTATCCTGTAACATATTTGTTTTGCAATGAAAGTGCGGAAACTGCCACACAAAATCTCTCCAAGCACTCTCTGCATATCTATAGGATATATGCTGTGAGATGTCGTCAATCAGCTGCCAAACAGTCAGAACAGGAACTGATGAGTTTTTCAGTTCCTTGTGACATGAGCACCAAACGTGATGAAGAACCATGGGCGAAATCATTTCTGGCACACATGAATGAGAAGATCAAGCAATGCAATCATGTCTGGGCATCAGTTCGGATGGAGATCGAGGTTTTCCATAGCCAATCAGGACTCATTGTTTTGTAGTTCAGATCAGCAAGCCTTTGACTATATGATACCTGCAAAGTTGGCATTCACTGATCCTACAAGTTGCATCTATACCACCTGTAAAATGGTCCAAGTTGGTGAAGCTTCTTTCAGTTCATTCGGCATTCAGGTGGAA]
[-] EMBL CB653086 [TTTGGCTTTCGGATTGCTGACGGAACATCACTGGTTATTGATCTGAGCACCTTCCTTGAGAGTGCCCAAATTGCATTGCCTTCTTTGAATGGGTGGCTTTTGGGTTATCCTGTAACATATTTGTTTTGCAATGAAAGTGCGGAAACTGCCACACAAAATCTCTCCAAGCACTCTCTGCATATCTATAGGATATATGCTGTGAGATGTCGTCAATCAGCTGCCAAACAGTCAGAACAGGAACTGATGAGTTTTTCAGTTCCTTGTGACATGAGCACCAAACGTGATGAAGAACCATGGGCGAAATCATTTCTGGCACACATGAATGAGAAGATCAAGCAATGCAATCATGTCTGGGCATCAGTTCGGATGGAGATCGAGGTTTTCCATAGCCAATCAGGACTCATTGTTTTGTAGTTCAGATCAGCAAGCCTTTGACTATATGATACCTGCAAAGTTGGCATTCACTGATCCTACAAGTTGCATCTATACCACCTGTAAAATGGTCCAAGTTGGTGAAGCTTCTTTCAGTTCATTCGGCATTCAGGTGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5709#0 AGGTGGAGTTGGACGCGGCGGCGGAGGTGGAGATGGCGGCGGCGGCGGCGGCGACGGCGG 60
consensus_5709#1 ------------------------------------------------------------
consensus_5709#0 AGGAGTACGAGGAGATGCTCCGGGTGGTGGAGGCGATCGCCACGCGCATCCGGTGGCGCC 120
consensus_5709#1 ------------------------------------------------------------
consensus_5709#0 TCCGGCCCCACTCCAAGCGCCGCCTCCTCAACGATATACTGTTCCTCTGCAGTGGGTTGC 180
consensus_5709#1 ------------------------------------------------------------
consensus_5709#0 GGCCTGTGGTACTGATGGATTACGGTGGCACAATGCCTGAACTACAGGACAATCTCTGCT 240
consensus_5709#1 ------------------------------------------------------------
consensus_5709#0 CCCTGCTGCATCATGCTCGGCAGGAGTCAAGCATGTTGAGTCCACTAAGGCTGATGGTTA 300
consensus_5709#1 ------------------------------------------------------------
consensus_5709#0 TTAAAGATATGCTTTACTTGATTCATGCAAAGGGTCTTGCTGAGCATGCTTCACCAAGTG 360
consensus_5709#1 ------------------------------------------------------------
consensus_5709#0 CAAGGTCACAGCACAAGCTCGCTTTTGTGGACCTAGAGAAAAGCTGTAGCAAAGTCTTTG 420
consensus_5709#1 ------------------------------------------------------------
consensus_5709#0 CCTTCTCAGATCCTGTCTTTCTATTTTCTCTGTCCTATGTCCTATTCTTCTTTCCTTTGT 480
consensus_5709#1 ------------------------------------------------------------
consensus_5709#0 TGTATTACTGAATGCTGTCTTGGTGCAGCTGCTTTCAGAAACCGAAGAGAATGGTGCTCT 540
consensus_5709#1 ------------------------------------------------------------
consensus_5709#0 GCATGAGTTTTTATCCATCCAAGACCTGTTTTCAGCCAACTTCCCTGTAGATGCAGATGT 600
consensus_5709#1 ------------------------------------------------------------
consensus_5709#0 AGATCTGCCTATTATACAACCTGAAGCAAAAGGGCAGATGTCAGAAATTCCAGAGGGAAC 660
consensus_5709#1 ------------------------------------------------------------
consensus_5709#0 CACTATGGATAATTTTGGCTTTCGGATTGCTGACGGAACATCACTGGTTATTGATCTGAG 720
consensus_5709#1 ------------------------------------------------------------
consensus_5709#0 CACCTTCCTTGAGAGTGCCCAAATTGCATTGCCTTCTTTGAATGGGTAAATTCTAGTTCT 780
consensus_5709#1 ------------------------------------------------------------
consensus_5709#0 ATATATTATTGAACCCACAACCATTCAGTGTTGAAAGTACCTTTTTTATTGGTTCAGTTT 840
consensus_5709#1 ------------------------------------------------------------
consensus_5709#0 TCTGGTTCTTTTAACATCAAAAGGAGATGTTTGCTATGTTGGTGAAGTTAAGCAGAAGCA 900
consensus_5709#1 TTTGGCTTTCGGATTGCTGACGGAACATCACTGGT-TATTGAT----CTGAGCACCTTC- 54
* *** * * * * * * ** ** * * *** * * **** *
consensus_5709#0 CTTAAATTTGTCTATATTAATATTTAATCATATTGCAATGTTTTTAGGTGGCTTTTGGGT 960
consensus_5709#1 CTTGAGAGTGCCCAAATTG-CATT--GCCTTCTTTGAATG------GGTGGCTTTTGGGT 105
*** * ** * * *** *** * * ** **** **************
consensus_5709#0 TATCCTGTAACATATTTGTTTTGCAATGAAAGTGCGGAAACTGCCACACAAAATCTCTCC 1020
consensus_5709#1 TATCCTGTAACATATTTGTTTTGCAATGAAAGTGCGGAAACTGCCACACAAAATCTCTCC 165
************************************************************
consensus_5709#0 AAGCACTCTCTGCATATCTATAGGATATATGCTGTGAGGTTTGGCATTTTAGACTGACCC 1080
consensus_5709#1 AAGCACTCTCTGCATATCTATAGGATATATGCTGTGAG---------------------- 203
**************************************
consensus_5709#0 ACTTGGAGTTTTCTTTTGGGATGAGAATTCTTTGAAGCTTACTTGGAATATCTTTACTGC 1140
consensus_5709#1 ------------------------------------------------------------
consensus_5709#0 AGATGTCGTCAATCAGCTGCCAAACAGTCAGAACAGGAACTGATGAGTTTTTCAGTTCCT 1200
consensus_5709#1 --ATGTCGTCAATCAGCTGCCAAACAGTCAGAACAGGAACTGATGAGTTTTTCAGTTCCT 261
**********************************************************
consensus_5709#0 TGTGACATGAGCACCAAACGTGATGAAGAACCATGGGCGAAATCATTTCTGGCACACATG 1260
consensus_5709#1 TGTGACATGAGCACCAAACGTGATGAAGAACCATGGGCGAAATCATTTCTGGCACACATG 321
************************************************************
consensus_5709#0 AATGAGAAGATCAAGCAATGCAATCATGTCTGGGCATCAGTTCGGATGGAGATCGAGGTT 1320
consensus_5709#1 AATGAGAAGATCAAGCAATGCAATCATGTCTGGGCATCAGTTCGGATGGAGATCGAGGTT 381
************************************************************
consensus_5709#0 TTCCATAGCCAATCAGGACTCATTGTTTTGTAGTTCAGATCAGCAAGCCTTTGACTATAT 1380
consensus_5709#1 TTCCATAGCCAATCAGGACTCATTGTTTTGTAGTTCAGATCAGCAAGCCTTTGACTATAT 441
************************************************************
consensus_5709#0 GATACCTGCAAAGTTGGCATTCACTGATCCTACAAGTTGCATCTATACCACCTGTAAAAT 1440
consensus_5709#1 GATACCTGCAAAGTTGGCATTCACTGATCCTACAAGTTGCATCTATACCACCTGTAAAAT 501
************************************************************
consensus_5709#0 GGTCCAAGTTGGTGAAGCTTCTTTCAGTTCATTCGGCATTCAGGTGGAATCAAGGAGGCA 1500
consensus_5709#1 GGTCCAAGTTGGTGAAGCTTCTTTCAGTTCATTCGGCATTCAGGTGGAA----------- 550
*************************************************
consensus_5709#0 ACGATGAATAGAGATATATATCATGATAAATTGATGATCGCATATATAGATCTGTGCCTG 1560
consensus_5709#1 ------------------------------------------------------------
consensus_5709#0 CAACATAGCAGAGAGATAATTTGTTCTGCAATGTTCAACGACGAACATATCCTCTGTAGT 1620
consensus_5709#1 ------------------------------------------------------------
consensus_5709#0 CTGTACCACAGATGTTGCGAATCACAACTA 1650
consensus_5709#1 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||