cluster # 5712

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Oryza sativa
cluster # 5712 cluster # 5712 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5712#0 length = 366 sequences # 1

consensus_5712#1 length = 338 sequences # 2

consensusID : consensus_5712#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATCGAAACCATGAAATAGCTAAAACACTGGTGCTACCATGAAATAGTTTATCCCCCTGGAGTACTGGACATTAAAAATTCACCACTTAACTCACCCCCTCACCCATGCATCCAAATCCATGCGTGCGGGAAACAATTACCACAACACACACAGTAAGTTTGAATTTCATAACATCCATTTTTTTTTTTTTCCTCCCCCCAATTCATTAACATTTTATACATGCCTTCTCCACAAAAAAAAAAAAGAAGAAACCGGAAGAGAACTTTTTCCATCGCCCAATCATGGGTTTCACCAGCCTGAACTCATAAAGCTCCTTGAAATGC]

[+] EMBL CF301107             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATCGAAACCATGAAATAGCTAAAACACTGGTGCTACCATGAAATAGTTTATCCCCCTGGAGTACTGGACATTAAAAATTCACCACTTAACTCACCCCCTCACCCATGCATCCAAATCCATGCGTGCGGGAAACAATTACCACAACACACACAGTAAGTTTGAATTTCATAACATCCATTTTTTTTTTTTTCCTCCCCCCAATTCATTAACATTTTATACATGCCTTCTCCACAAAAAAAAAAAAGAAGAAACCGGAAGAGAACTTTTTCCATCGCCCAATCATGGGTTTCACCAGCCTGAACTCATAAAGCTCCTTGAAATGC]




>consensus_5712#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATCGAAACCATGAAATA
GCTAAAACACTGGTGCTACCATGAAATAGTTTATCCCCCTGGAGTACTGGACATTAAAAA
TTCACCACTTAACTCACCCCCTCACCCATGCATCCAAATCCATGCGTGCGGGAAACAATT
ACCACAACACACACAGTAAGTTTGAATTTCATAACATCCATTTTTTTTTTTTTCCTCCCC
CCAATTCATTAACATTTTATACATGCCTTCTCCACAAAAAAAAAAAAGAAGAAACCGGAA
GAGAACTTTTTCCATCGCCCAATCATGGGTTTCACCAGCCTGAACTCATAAAGCTCCTTG
AAATGC

consensusID : consensus_5712#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 338
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGCGTAGTTTATCCACCATAATTAAAATCGAAACCATGAAATAGCTAAAACACTGGTGCTACCATGAAATAGTTTATCCCCCTGTAGTACTGGACATAAAAAATTCACCACTTAACTTACCCCCTTACCCATGCATCCAAATCCATGCTTGCGGGAAACAATTACCACAACACACACAGTAAGTTTGAATTTTATAACATCCATTTTTTTTTTTTTCCTCCCCCCAATTCATTAACATTTTATACATGCATACTCCACAAAAAAAAAAAGAAGAACCCGGAAGAGAACTTTTT]

[+] EMBL CF333236             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGCGTAGTTTATCCACCATAATTAAAATCGAAACCATGAAATAGCTAAAACACTGGTGCTACCATGAAATAGTTTATCCCCCTGTAGTACTGGACATAAAAAATTCACCACTTAACTTACCCCCTTACCCATGCATCCAAATCCATGCTTGCGGGAAACAATTACCACAACACACACAGTAAGTTTGAATTTTATAACATCCATTTTTTTTTTTTTCCTCCCCCCAATTCATTAACATTTTATACATGCATACTCCACAAAAAAAAAAAGAAGAACCCGGAAGA         ]
[+] EMBL CF298357             [                                                                                                                                                                        CTTACCCATGCATCCAAATCCATGCTTGCGGGAAACAATTACCACAACACACACAGGAAGTTTGAATTTTATAACATCCATTTTTTTTTTTTTCCTCCCCCCAATTCATTAACATTTTATACATGCATACTCCACAAAAAAAAAAAGAAGAAACCGGAAGAGAACTTTTT]




>consensus_5712#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGCGTAGTTTATCCA
CCATAATTAAAATCGAAACCATGAAATAGCTAAAACACTGGTGCTACCATGAAATAGTTT
ATCCCCCTGTAGTACTGGACATAAAAAATTCACCACTTAACTTACCCCCTTACCCATGCA
TCCAAATCCATGCTTGCGGGAAACAATTACCACAACACACACAGTAAGTTTGAATTTTAT
AACATCCATTTTTTTTTTTTTCCTCCCCCCAATTCATTAACATTTTATACATGCATACTC
CACAAAAAAAAAAAGAAGAACCCGGAAGAGAACTTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5712#0      ------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---------------- 38
consensus_5712#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGCGTAGTTTATCCA 60
                            **************************************                

consensus_5712#0      ------TTAAAATCGAAACCATGAAATAGCTAAAACACTGGTGCTACCATGAAATAGTTT 92
consensus_5712#1      CCATAATTAAAATCGAAACCATGAAATAGCTAAAACACTGGTGCTACCATGAAATAGTTT 120
                            ******************************************************

consensus_5712#0      ATCCCCCTGGAGTACTGGACATTAAAAATTCACCACTTAACTCACCCCCTCACCCATGCA 152
consensus_5712#1      ATCCCCCTGTAGTACTGGACATAAAAAATTCACCACTTAACTTACCCCCTTACCCATGCA 180
                      ********* ************ ******************* ******* *********

consensus_5712#0      TCCAAATCCATGCGTGCGGGAAACAATTACCACAACACACACAGTAAGTTTGAATTTCAT 212
consensus_5712#1      TCCAAATCCATGCTTGCGGGAAACAATTACCACAACACACACAGTAAGTTTGAATTTTAT 240
                      ************* ******************************************* **

consensus_5712#0      AACATCCATTTTTTTTTTTTTCCTCCCCCCAATTCATTAACATTTTATACATGCCTTCTC 272
consensus_5712#1      AACATCCATTTTTTTTTTTTTCCTCCCCCCAATTCATTAACATTTTATACATGCATACTC 300
                      ****************************************************** * ***

consensus_5712#0      CACAAAAAAAAAAAAGAAGAAACCGGAAGAGAACTTTTTCCATCGCCCAATCATGGGTTT 332
consensus_5712#1      CACAAAAAAAAAAA-GAAGAACCCGGAAGAGAACTTTTT--------------------- 338
                      ************** ****** *****************                     

consensus_5712#0      CACCAGCCTGAACTCATAAAGCTCCTTGAAATGC 366
consensus_5712#1      ----------------------------------