These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5714#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1554 fasta sequence [TTGGTTTGGTTTGGCTTTGCTTCTTCCTCGCGCGGCGCCTCCCATCCGCATGGATGATGCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTTGATATTTCCATTTCCTCCCCATTGTTCCCTCCTTCTGCCTCCTCCCTCCTCAAATCTACACCTATCCCCACCACCGCCCTAGCTTCTTCTCCTCTCCCGCAGCCGCCCGCAAGATCGATCTGTCACTCATGCCCGTGCAGCTGGGAGGAGGGGGCAAGGTGGCGGAACCCAAGGACCTCGCCGCCACCGACAAGGACCGCCCCTCCTCCAAGAAGAACCGCCGCCGCCAAAAGAAGCCCGCAACTTCCGCCGCCATCTCCCCGCCGGTCGCCGCCATGCAGACCCTCTTCGACACCAGCAGGGAGGTCTTCCAGGATTCTTTGCCGGGATTCGTGCCGCCGCCCCAAGCCGTCGCCCGACTCGCCGCCCTACTCAATGATTTGAAACCACATGATGTTGGAATTGAGCCGAGTATGTCGTGTTTCAAGAATGCCGATTCTAAAGGGCCTCCTCGGGTGACTTATCTACATTTTTACGATTGCCCCAAGTTTTCGTTTGGTATCTTCTGTTTACCGAAGTCAGCTGTCATTCCCCTCCACAATCATCCTGGGATGACAGTATTCTGCAAGATACTGTTTGGCTCCATGCACCTCAAGTCCTATGACTGGGCTAAAAGTGCCCCAGATAATGATAATAATGCACTTGAGACCTCAGATGGAGCTCGTTTAGCAAAGGTAAATACAGATGCGGTTTTTGATGCTTCATCGGAGACCACAGTTCTATACCCTGAAAATGGAGGGAATTTGCACTGTTTTACTGCAAGGACAGCTTGTGCTGTGCTTGACGTGATGGGACCCCCGTACAACCGCGCGGATGGAAGGGATTGCTCATATTACGACGAATCCCCATACTTGAGTTCATCTGGTGGAGATGCGCGGTACTCGTGGCTCAAAGAAAATCATAGTACGTTCGAGATGAAAGGTGTACAGATGCCACAAAGGTTTATCGTTTAGAAATGACATACAGCATCATTTTGTGGCAACACCTGCAACCATTTCCGCCGAAGAATGGTCCTCCTCTAGCTTGCTGTAGATACCTGTAACTGCAAAGACAGGCAGATGGTACAAGGGAAGATGTGGCCACTAAGCTCAGACTAGCAAACTCTTGAGTGACACAGACGTTACATTTGTTTGGCTTCTTATTTTGGTCAGGGTTGAAACAATCTCTTGTGATTTTCAGATAACTCTGTTCCTCATATGTTATCCTCGTCTGGCAGTGCAAAATTGGGATTGGGTGATACAGTGAACAAGTGTTTTGTTTTTGGGCCATGATCATCTTTTTTTGTTTCCCTGTAGAACTGTATGCAGGCGTTTTTTGAAAGTGATCATGTACCGAATTCAGAGTGTGGTTTGCTTGGTTTGTTGAACAGGGAGGCTATTCCTTTTTGCCTCTTACTGTAGTAGACAAGAGGCATATACATACATAACATAGCCTTTGTTTCTTGAGCAAAGAAATAAA] [+] EMBL AK068520 [TTGGTTTGGTTTGGCTTTGCTTCTTCCTCGCGCGGCGCCTCCCATCCGCATGGATGATGCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTTGATATTTCCATTTCCTCCCCATTGTTCCCTCCTTCTGCCTCCTCCCTCCTCAAATCTACACCTATCCCCACCACCGCCCTAGCTTCTTCTCCTCTCCCGCAGCCGCCCGCAAGATCGATCTGTCACTCATGCCCGTGCAGCTGGGAGGAGGGGGCAAGGTGGCGGAACCCAAGGACCTCGCCGCCACCGACAAGGACCGCCCCTCCTCCAAGAAGAACCGCCGCCGCCAAAAGAAGCCCGCAACTTCCGCCGCCATCTCCCCGCCGGTCGCCGCCATGCAGACCCTCTTCGACACCAGCAGGGAGGTCTTCCAGGATTCTTTGCCGGGATTCGTGCCGCCGCCCCAAGCCGTCGCCCGACTCGCCGCCCTACTCAATGATTTGAAACCACATGATGTTGGAATTGAGCCGAGTATGTCGTGTTTCAAGAATGCCGATTCTAAAGGGCCTCCTCGGGTGACTTATCTACATTTTTACGATTGCCCCAAGTTTTCGTTTGGTATCTTCTGTTTACCGAAGTCAGCTGTCATTCCCCTCCACAATCATCCTGGGATGACAGTATTCTGCAAGATACTGTTTGGCTCCATGCACCTCAAGTCCTATGACTGGGCTAAAAGTGCCCCAGATAATGATAATAATGCACTTGAGACCTCAGATGGAGCTCGTTTAGCAAAGGTAAATACAGATGCGGTTTTTGATGCTTCATCGGAGACCACAGTTCTATACCCTGAAAATGGAGGGAATTTGCACTGTTTTACTGCAAGGACAGCTTGTGCTGTGCTTGACGTGATGGGACCCCCGTACAACCGCGCGGATGGAAGGGATTGCTCATATTACGACGAATCCCCATACTTGAGTTCATCTGGTGGAGATGCGCGGTACTCGTGGCTCAAAGAAAATCATAGTACGTTCGAGATGAAAGGTGTACAGATGCCACAAAGGTTTATCGTTTAGAAATGACATACAGCATCATTTTGTGGCAACACCTGCAACCATTTCCGCCGAAGAATGGTCCTCCTCTAGCTTGCTGTAGATACCTGTAACTGCAAAGACAGGCAGATGGTACAAGGGAAGATGTGGCCACTAAGCTCAGACTAGCAAACTCTTGAGTGACACAGACGTTACATTTGTTTGGCTTCTTATTTTGGTCAGGGTTGAAACAATCTCTTGTGATTTTCAGATAACTCTGTTCCTCATATGTTATCCTCGTCTGGCAGTGCAAAATTGGGATTGGGTGATACAGTGAACAAGTGTTTTGTTTTTGGGCCATGATCATCTTTTTTTGTTTCCCTGTAGAACTGTATGCAGGCGTTTTTTGAAAGTGATCATGTACCGAATTCAGAGTGTGGTTTGCTTGGTTTGTTGAACAGGGAGGCTATTCCTTTTTGCCTCTTACTGTAGTAGACAAGAGGCATATACATACATAACATAGCCTTTGTTTCTTGAGCAAAGAAAT ] [-] EMBL CB645901 [ ACTGTTTTACTGCAAGGACAGCTTGTGCTGTGCTTGACGTGATGGGACCCCCGTACAACCGCGGGGATGGAAGGGATTGCTCATATTAGGACGAATCCCCATACTTGAGTTCATCTGGTGGAGATGCACGGTACTCGTGGCTCAAAGAAAATCATAGTACGTTCGAGATGAAAGGTGTACAGATGCCACAAAGGTTTATCGTTTAGAAATGACATACAGCATCATTTTGTGGCAACACCTGCAACCATTTCCGCCGAAGAATGGTCCTCCTCTAGCTTGCTGTAGATACCTGTAACTGCAAAGACAGGCAGATGGTACAAGGGAAGATGTGGCCACTAAGCTCAGACTAGCAAACTCTTGAGTGACACAGACGTTACATTTGTTTGGCTTCTTATTTTGGTCAGGGTTGAAACAATCTCTTGTGATTTTCAGATAACTCTGTTCCTCATATGTTATCCTCGTCTGGCAGTGCAAAATTGGGATTGGGTGATACAGTGAACAAGTGTTTTGTTTTTGGGCCATGATCATCTTTTTTTGTTTCCCTGTAGAACTGTATGCAGGCGTTTTTTGAAAGTGATCATGTACCGAATTCAGAGTGTGGTTTGCTTGGTTTGTTGAACAGGGAAGCTATTCCTTTTTGCCTCTTACTGTAGTAGACAAGAGGCATAAAGGTACATAACATAGCCTTTGTTTCTTGAGCAAAccttaaaa] consensusID : consensus_5714#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1394 fasta sequence [TTTCTTCTTCTTCTTCTTCTTTTTTCCATCATGTGATAGTAGTGATACTATGCAAAGACATGATGAAGAAATTGCTACAAGCTGGTTCTTAACATTGTGTTTCTTCTAAATCTTCCAAGTATTTGATATTTCTGCAATTGACTCCTTAATGTTCAAACTAAACTAGTAGGTCGTTCTTTTTTGTTTGTTAGACTACTTCAGTAATTATTATTTTTGACTCAGCCTTGCACTTTTGAACATTTCTTGCATGTGCACTTGTCTATATGCAAATACCTGTGATTCTTAACCCAGATCCTGACATCCATTTTGTCCCATCTCCTTCCTTTTGGATGCAGATGATTTGAAACCACATGATGTTGGAATTGAGCCGAGTATGTCGTGTTTCAAGAATGCCGATTCTAAAGGGCCTCCTCGGGTGACTTATCTACATTTTTACGATTGCCCCAAGTTTTCGTTTGGTATCTTCTGTTTACCGAAGTCAGCTGTCATTCCCCTCCACAATCATCCTGGGATGACAGTATTCTGCAAGATACTGTTTGGCTCCATGCACCTCAAGTCCTATGACTGGGCTAAAAGTGCCCCAGATAATGATAATAATGCACTTGAGACCTCAGATGGAGCTCGTTTAGCAAAGGTAAATACAGATGCGGTTTTTGATGCTTCATCGGAGACCACAGTTCTATACCCTGAAAATGGAGGGAATTTGCACTGTTTTACTGCAAGGACAGCTTGTGCTGTGCTTGACGTGATGGGACCCCCGTACAACCGCGCGGATGGAAGGGATTGCTCATATTACGACGAATCCCCATACTTGAGTTCATCTGGTGGAGATGCACGGTACTCGTGGCTCAAAGAAAATCATAGTACGTTCGAGATGAAAGGTGTACAGATGCCACAAAGGTTTATCGTTTAGAAATGACATACAGCATCATTTTGTGGCAACACCTGCAACCATTTCCGCCGAAGAATGGTCCTCCTCTAGCTTGCTGTAGATACCTGTAACTGCAAAGACAGGCAGATGGTACAAGGGAAGATGTGGCCACTAAGCTCAGACTAGCAAACTCTTGAGTGACACAGACGTTACATTTGTTTGGCTTCTTATTTTGGTCAGGGTTGAAACAATCTCTTGTGATTTTCAGATAACTCTGTTCCTCATATGTTATCCTCGTCTGGCAGTGCAAAATTGGGATTGGGTGATACAGTGAACAAGTGTTTTGTTTTTGGGCCATGATCATCTTTTTTTGTTTCCCTGTAGAACTGTATGCAGGCGTTTTTTGAAAGTGATCATGTACCGAATTCAGAGTGTGGTTTGCTTGGTTTGTTGAACAGGGAAGCTATTCCTTTTTGCCTCTTACTGTAGTAGACAAGAGGCATATACATACATAACATAGCCT] [+] EMBL AK065070 [TTTCTTCTTCTTCTTCTTCTTTTTTCCATCATGTGATAGTAGTGATACTATGCAAAGACATGATGAAGAAATTGCTACAAGCTGGTTCTTAACATTGTGTTTCTTCTAAATCTTCCAAGTATTTGATATTTCTGCAATTGACTCCTTAATGTTCAAACTAAACTAGTAGGTCGTTCTTTTTTGTTTGTTAGACTACTTCAGTAATTATTATTTTTGACTCAGCCTTGCACTTTTGAACATTTCTTGCATGTGCACTTGTCTATATGCAAATACCTGTGATTCTTAACCCAGATCCTGACATCCATTTTGTCCCATCTCCTTCCTTTTGGATGCAGATGATTTGAAACCACATGATGTTGGAATTGAGCCGAGTATGTCGTGTTTCAAGAATGCCGATTCTAAAGGGCCTCCTCGGGTGACTTATCTACATTTTTACGATTGCCCCAAGTTTTCGTTTGGTATCTTCTGTTTACCGAAGTCAGCTGTCATTCCCCTCCACAATCATCCTGGGATGACAGTATTCTGCAAGATACTGTTTGGCTCCATGCACCTCAAGTCCTATGACTGGGCTAAAAGTGCCCCAGATAATGATAATAATGCACTTGAGACCTCAGATGGAGCTCGTTTAGCAAAGGTAAATACAGATGCGGTTTTTGATGCTTCATCGGAGACCACAGTTCTATACCCTGAAAATGGAGGGAATTTGCACTGTTTTACTGCAAGGACAGCTTGTGCTGTGCTTGACGTGATGGGACCCCCGTACAACCGCGCGGATGGAAGGGATTGCTCATATTACGACGAATCCCCATACTTGAGTTCATCTGGTGGAGATGCACGGTACTCGTGGCTCAAAGAAAATCATAGTACGTTCGAGATGAAAGGTGTACAGATGCCACAAAGGTTTATCGTTTAGAAATGACATACAGCATCATTTTGTGGCAACACCTGCAACCATTTCCGCCGAAGAATGGTCCTCCTCTAGCTTGCTGTAGATACCTGTAACTGCAAAGACAGGCAGATGGTACAAGGGAAGATGTGGCCACTAAGCTCAGACTAGCAAACTCTTGAGTGACACAGACGTTACATTTGTTTGGCTTCTTATTTTGGTCAGGGTTGAAACAATCTCTTGTGATTTTCAGATAACTCTGTTCCTCATATGTTATCCTCGTCTGGCAGTGCAAAATTGGGATTGGGTGATACAGTGAACAAGTGTTTTGTTTTTGGGCCATGATCATCTTTTTTTGTTTCCCTGTAGAACTGTATGCAGGCGTTTTTTGAAAGTGATCATGTACCGAATTCAGAGTGTGGTTTGCTTGGTTTGTTGAACAGGGAAGCTATTCCTTTTTGCCTCTTACTGTAGTAGACAAGAGGCATATACATACATAACATAGCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5714#0 TTGGTTTGGTTTGGCTTTGCTTCTTCCTCGCGCGGCGCCTCCCATCCGCATGGATGATGC 60 consensus_5714#1 ------------------------------------------------------------ consensus_5714#0 CTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTTGATATTTCCATTTCCTCCCCATTG 120 consensus_5714#1 -------------------------------------------------------TTTCT 5 * consensus_5714#0 TTCCCTCCTTCTGCCTCCTCCCTCCTCAAATCTACACCTATCCCCACCACCGCCCTAGCT 180 consensus_5714#1 TCTTCTTCTTCTTCTTTTTTCCATCATGTGATAGTAGTGATACTATGCAAAGACATGA-T 64 * ** ***** * * * ** * * ** * ** * * * * consensus_5714#0 TCTTCTCCTCTCCCGCAGCCGCCCGCAAGATCGATCTGTCACTCATGCCCGTGCAGCTGG 240 consensus_5714#1 GAAGAAATTGCTACAAGCTGGTTCTTAACATTG---TGTTTCTTCTAAATCTTC--CAAG 119 * * * * ** ** * *** ** * * * * * consensus_5714#0 GAGGAGGGGGCAAGGTGGCGGAACCCAAGGACCTCGCCGCCACCGACAAGGACCGCCCCT 300 consensus_5714#1 TATTTGATATTTCTGCAATTGACTCCTTAATGTTCAAACTAAACTAGTAGGTCGTTCTTT 179 * * * ** ** ** * * * *** * * * consensus_5714#0 CCTCCAAGAAGAACCGCCGCCGCCAAAAGAAGCCCGCAACTTCCGCCGCCATCTCCCCGC 360 consensus_5714#1 TTTGTTTGTTAGACTACT-TCAGTAATTATTATTTTTGACTCAGCCTTGCACTTTTGAAC 238 * * ** * * ** *** * ** * * consensus_5714#0 CGGTCGCCGCCATGCAGACCCTCTTCGACACCAGCAGGGAGGTCTTCCAGGATTCTTTGC 420 consensus_5714#1 --ATTTCTTGCATGTGCACTTGTCTATATGCAAATA---------CCTGTGATTCTTAAC 287 * * **** ** * * * * * * ******* * consensus_5714#0 CGGGATTCGTGCCGCCGCCCCAAGCCGTCGCCCGACTCGCCGCCCTACTCAATGATTTGA 480 consensus_5714#1 CCAGATCCTGACATCCATTTTGTCCCATCTCCTTCCTTTTGGATGCA---GATGATTTGA 344 * *** * * ** ** ** ** ** * * ********* consensus_5714#0 AACCACATGATGTTGGAATTGAGCCGAGTATGTCGTGTTTCAAGAATGCCGATTCTAAAG 540 consensus_5714#1 AACCACATGATGTTGGAATTGAGCCGAGTATGTCGTGTTTCAAGAATGCCGATTCTAAAG 404 ************************************************************ consensus_5714#0 GGCCTCCTCGGGTGACTTATCTACATTTTTACGATTGCCCCAAGTTTTCGTTTGGTATCT 600 consensus_5714#1 GGCCTCCTCGGGTGACTTATCTACATTTTTACGATTGCCCCAAGTTTTCGTTTGGTATCT 464 ************************************************************ consensus_5714#0 TCTGTTTACCGAAGTCAGCTGTCATTCCCCTCCACAATCATCCTGGGATGACAGTATTCT 660 consensus_5714#1 TCTGTTTACCGAAGTCAGCTGTCATTCCCCTCCACAATCATCCTGGGATGACAGTATTCT 524 ************************************************************ consensus_5714#0 GCAAGATACTGTTTGGCTCCATGCACCTCAAGTCCTATGACTGGGCTAAAAGTGCCCCAG 720 consensus_5714#1 GCAAGATACTGTTTGGCTCCATGCACCTCAAGTCCTATGACTGGGCTAAAAGTGCCCCAG 584 ************************************************************ consensus_5714#0 ATAATGATAATAATGCACTTGAGACCTCAGATGGAGCTCGTTTAGCAAAGGTAAATACAG 780 consensus_5714#1 ATAATGATAATAATGCACTTGAGACCTCAGATGGAGCTCGTTTAGCAAAGGTAAATACAG 644 ************************************************************ consensus_5714#0 ATGCGGTTTTTGATGCTTCATCGGAGACCACAGTTCTATACCCTGAAAATGGAGGGAATT 840 consensus_5714#1 ATGCGGTTTTTGATGCTTCATCGGAGACCACAGTTCTATACCCTGAAAATGGAGGGAATT 704 ************************************************************ consensus_5714#0 TGCACTGTTTTACTGCAAGGACAGCTTGTGCTGTGCTTGACGTGATGGGACCCCCGTACA 900 consensus_5714#1 TGCACTGTTTTACTGCAAGGACAGCTTGTGCTGTGCTTGACGTGATGGGACCCCCGTACA 764 ************************************************************ consensus_5714#0 ACCGCGCGGATGGAAGGGATTGCTCATATTACGACGAATCCCCATACTTGAGTTCATCTG 960 consensus_5714#1 ACCGCGCGGATGGAAGGGATTGCTCATATTACGACGAATCCCCATACTTGAGTTCATCTG 824 ************************************************************ consensus_5714#0 GTGGAGATGCGCGGTACTCGTGGCTCAAAGAAAATCATAGTACGTTCGAGATGAAAGGTG 1020 consensus_5714#1 GTGGAGATGCACGGTACTCGTGGCTCAAAGAAAATCATAGTACGTTCGAGATGAAAGGTG 884 ********** ************************************************* consensus_5714#0 TACAGATGCCACAAAGGTTTATCGTTTAGAAATGACATACAGCATCATTTTGTGGCAACA 1080 consensus_5714#1 TACAGATGCCACAAAGGTTTATCGTTTAGAAATGACATACAGCATCATTTTGTGGCAACA 944 ************************************************************ consensus_5714#0 CCTGCAACCATTTCCGCCGAAGAATGGTCCTCCTCTAGCTTGCTGTAGATACCTGTAACT 1140 consensus_5714#1 CCTGCAACCATTTCCGCCGAAGAATGGTCCTCCTCTAGCTTGCTGTAGATACCTGTAACT 1004 ************************************************************ consensus_5714#0 GCAAAGACAGGCAGATGGTACAAGGGAAGATGTGGCCACTAAGCTCAGACTAGCAAACTC 1200 consensus_5714#1 GCAAAGACAGGCAGATGGTACAAGGGAAGATGTGGCCACTAAGCTCAGACTAGCAAACTC 1064 ************************************************************ consensus_5714#0 TTGAGTGACACAGACGTTACATTTGTTTGGCTTCTTATTTTGGTCAGGGTTGAAACAATC 1260 consensus_5714#1 TTGAGTGACACAGACGTTACATTTGTTTGGCTTCTTATTTTGGTCAGGGTTGAAACAATC 1124 ************************************************************ consensus_5714#0 TCTTGTGATTTTCAGATAACTCTGTTCCTCATATGTTATCCTCGTCTGGCAGTGCAAAAT 1320 consensus_5714#1 TCTTGTGATTTTCAGATAACTCTGTTCCTCATATGTTATCCTCGTCTGGCAGTGCAAAAT 1184 ************************************************************ consensus_5714#0 TGGGATTGGGTGATACAGTGAACAAGTGTTTTGTTTTTGGGCCATGATCATCTTTTTTTG 1380 consensus_5714#1 TGGGATTGGGTGATACAGTGAACAAGTGTTTTGTTTTTGGGCCATGATCATCTTTTTTTG 1244 ************************************************************ consensus_5714#0 TTTCCCTGTAGAACTGTATGCAGGCGTTTTTTGAAAGTGATCATGTACCGAATTCAGAGT 1440 consensus_5714#1 TTTCCCTGTAGAACTGTATGCAGGCGTTTTTTGAAAGTGATCATGTACCGAATTCAGAGT 1304 ************************************************************ consensus_5714#0 GTGGTTTGCTTGGTTTGTTGAACAGGGAGGCTATTCCTTTTTGCCTCTTACTGTAGTAGA 1500 consensus_5714#1 GTGGTTTGCTTGGTTTGTTGAACAGGGAAGCTATTCCTTTTTGCCTCTTACTGTAGTAGA 1364 **************************** ******************************* consensus_5714#0 CAAGAGGCATATACATACATAACATAGCCTTTGTTTCTTGAGCAAAGAAATAAA 1554 consensus_5714#1 CAAGAGGCATATACATACATAACATAGCCT------------------------ 1394 ****************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||