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Oryza sativa
cluster # 5716 cluster # 5716       Sequences # 3       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5716#0 length = 2276 sequences # 1  
 consensus_5716#1 length = 947 sequences # 1  
consensus_5716#2 length = 597 sequences # 1  
consensusID : consensus_5716#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2276
fasta sequence 
                              [ATCCTCCAAAACCAAAAGAACTGCCTAGCGCCTAGCGATGCTGCGCGCGGCGGCCACGGCGGCGCTCCGGCGCCTCCCACAGTCACAGGCCCCGAGGAGACAAGCGCGCGGTCTCCAGTACGCGAGCCCGGAGCGGCGACCGCTGGATGGTGCGAGGTGGGCGCTCTACGCGAGGCTGTCGGCGCACCTGCCGTCGGGTGGAATGGTGGAGGAGCTCGGCCGGTGGCTCCGCGAGAGGCGCCCGCTCTCGGAGGAGCAGGTCCTCTTCTGCGTCCGCAGGTTCCGCAAGTTCAAGCAGAACAAGCACGCCCTCCAGTTGATGGACTGGATGGAAGCTCGTGGAGTGAACTTGGAGCTCAAGCATCATGCTTTGCGGCTTGACCTTGTTAGCAAACTGAATGGTATACATGCTGCAGAAGAGTACTTCGGGAGCCTTCCAGATATTTTCAGGTCAAAGCAAACTTATTCCACTCTGCTTAACTGCTATGCTGAGCACCGGATGGCAGAGAAAGGCCTAGAACTCTATGAAAATATGAAAGCGATGAACATTGTTTCAGATATATTGGTGTACAACAATTTGATGTGCTTATACCTGAAGACAGATCAACCAGAGAAAATCCCCACTACAGTTGTAAAAATGCAAGAAAGTGGTATACAACCAAACAAGTTTTCATACTTTGTGCTAACAGAAAGCTACATTATGATGAATGACATAGAGTCCGCTGAGAAGGTCCTGAAAGAATTGCAGGAGGTAAATTCAGTTCCTTGGTCCTTGTATGCTACACTTGCTAACGGTTATAATAAGCTGCAGCAGTTTGACAAGGCAGAATTCACCCTTAAGAAAGCTGAGGAAGTTCTGGACAAGCATGACGTTTTCTCTTGGCATTGTCTTCTCTCCCACTATGCCAATTCCGGCAACTTGTCCGAGGTCAAGAGAATCTGGGAGTCTTTAAAGTCTGCATTCAAGAAATGCACAAATAGAAGCTATCTAGTGATGCTTAAAGCTCTGAAAAAGTTGGATGATTTTGACACCCTGCAGCAAATCTTTCAGGAATGGGAATCAAGCCATGAGCACTATGACATGAAAATACCAAATATTATCATCCAAGCTTACCTTGATAAGGGCATGGTAGACAAAGCTGAGGCTATGCGTCAGACAACCATGGCTCAGGATCATTCCAACTACAGAACATTTTGCATATTCGCAGAATTCTATTTGGAGAAATCTAAAATGAATGAGGCACTGCAGGTCTGGAAAGATGCAAAGAAAATGGTGAAGGGGCAGGATTGGGTGCCAGAAAAGCTTGTGAACAGATATCTGAAGCACTTTGAGGATTCAAAGGATGTGGATGGGATGGAGACGTTCTGTGAATGCCTGAAGAATCTCGGTCGCCTTGATGCTGAAGCCTATGAAGCCTTGATCCGGACCTATATATCTGTAGGTAGAACAAATCCATCCATCCCTCAGCGCATGGAAGTTGACAGGGTTGATATTCGGCCTGAAATGTTTGAATCGCTCAAAGCTATCTCCACTGAAGGAGTTGAGAGTTGAGACTAGGGGCATGTCTGGATTTTTGCCATCTACTACATTTTGGTAAGGCAACAAAATAGGCAAATACCAAACCTACTCTAACCATTACAATTATATGGTCACATTTCGTAATTCGGGGAGCAGTCATACCCTTGATTTTATTATTTTTTTAAGATCCTTCGCTATGGTATCATCTCATAAGTCATAGCGAGTGTCACGGACAATTTGTTTGGTGTTGACGCAGGGTGGTTCTCAGGAAAACCCTTTCAGTTGGAGGTCCTTGAAATGGCTGGAGATGAAATTGATGTCAAGCAGCCCACCCAGCAGCACTTTAAGCACTAACAAGTTATAATCATGGCTGAAAATGAACTGAAGGATGATGGTGTTAGGTTGCAAAATCGTTGGAAGACGGGACACTGGGATATGAAGGAGCTTGATGCTAGCATGAATATGCTGCAAAGGGTGGGAGCTCGGTGCTTTACCCACGCAATCACTAACAAGCCAGGTGGAATTACATCCATTCAGAACTTGGTGGATGTGATGGATTCAGTTGCATGCAGGGCCTGACAGTTGAGGTGGACGATTAGTCATGTTTAGATTAACTGGTAGCTCCTACCTTACTCTCGAATTAGCTTCAAAATGTTTCCCTTGCCAGATTGAATTTTCTTCGATTTACTCCGTGCAATATATATCAACGTGTTTTGTACATGCACACGTTTAGTTCTATTTTGCACAGCTTAAGATC]

[+] EMBL AK100563             [ATCCTCCAAAACCAAAAGAACTGCCTAGCGCCTAGCGATGCTGCGCGCGGCGGCCACGGCGGCGCTCCGGCGCCTCCCACAGTCACAGGCCCCGAGGAGACAAGCGCGCGGTCTCCAGTACGCGAGCCCGGAGCGGCGACCGCTGGATGGTGCGAGGTGGGCGCTCTACGCGAGGCTGTCGGCGCACCTGCCGTCGGGTGGAATGGTGGAGGAGCTCGGCCGGTGGCTCCGCGAGAGGCGCCCGCTCTCGGAGGAGCAGGTCCTCTTCTGCGTCCGCAGGTTCCGCAAGTTCAAGCAGAACAAGCACGCCCTCCAGTTGATGGACTGGATGGAAGCTCGTGGAGTGAACTTGGAGCTCAAGCATCATGCTTTGCGGCTTGACCTTGTTAGCAAACTGAATGGTATACATGCTGCAGAAGAGTACTTCGGGAGCCTTCCAGATATTTTCAGGTCAAAGCAAACTTATTCCACTCTGCTTAACTGCTATGCTGAGCACCGGATGGCAGAGAAAGGCCTAGAACTCTATGAAAATATGAAAGCGATGAACATTGTTTCAGATATATTGGTGTACAACAATTTGATGTGCTTATACCTGAAGACAGATCAACCAGAGAAAATCCCCACTACAGTTGTAAAAATGCAAGAAAGTGGTATACAACCAAACAAGTTTTCATACTTTGTGCTAACAGAAAGCTACATTATGATGAATGACATAGAGTCCGCTGAGAAGGTCCTGAAAGAATTGCAGGAGGTAAATTCAGTTCCTTGGTCCTTGTATGCTACACTTGCTAACGGTTATAATAAGCTGCAGCAGTTTGACAAGGCAGAATTCACCCTTAAGAAAGCTGAGGAAGTTCTGGACAAGCATGACGTTTTCTCTTGGCATTGTCTTCTCTCCCACTATGCCAATTCCGGCAACTTGTCCGAGGTCAAGAGAATCTGGGAGTCTTTAAAGTCTGCATTCAAGAAATGCACAAATAGAAGCTATCTAGTGATGCTTAAAGCTCTGAAAAAGTTGGATGATTTTGACACCCTGCAGCAAATCTTTCAGGAATGGGAATCAAGCCATGAGCACTATGACATGAAAATACCAAATATTATCATCCAAGCTTACCTTGATAAGGGCATGGTAGACAAAGCTGAGGCTATGCGTCAGACAACCATGGCTCAGGATCATTCCAACTACAGAACATTTTGCATATTCGCAGAATTCTATTTGGAGAAATCTAAAATGAATGAGGCACTGCAGGTCTGGAAAGATGCAAAGAAAATGGTGAAGGGGCAGGATTGGGTGCCAGAAAAGCTTGTGAACAGATATCTGAAGCACTTTGAGGATTCAAAGGATGTGGATGGGATGGAGACGTTCTGTGAATGCCTGAAGAATCTCGGTCGCCTTGATGCTGAAGCCTATGAAGCCTTGATCCGGACCTATATATCTGTAGGTAGAACAAATCCATCCATCCCTCAGCGCATGGAAGTTGACAGGGTTGATATTCGGCCTGAAATGTTTGAATCGCTCAAAGCTATCTCCACTGAAGGAGTTGAGAGTTGAGACTAGGGGCATGTCTGGATTTTTGCCATCTACTACATTTTGGTAAGGCAACAAAATAGGCAAATACCAAACCTACTCTAACCATTACAATTATATGGTCACATTTCGTAATTCGGGGAGCAGTCATACCCTTGATTTTATTATTTTTTTAAGATCCTTCGCTATGGTATCATCTCATAAGTCATAGCGAGTGTCACGGACAATTTGTTTGGTGTTGACGCAGGGTGGTTCTCAGGAAAACCCTTTCAGTTGGAGGTCCTTGAAATGGCTGGAGATGAAATTGATGTCAAGCAGCCCACCCAGCAGCACTTTAAGCACTAACAAGTTATAATCATGGCTGAAAATGAACTGAAGGATGATGGTGTTAGGTTGCAAAATCGTTGGAAGACGGGACACTGGGATATGAAGGAGCTTGATGCTAGCATGAATATGCTGCAAAGGGTGGGAGCTCGGTGCTTTACCCACGCAATCACTAACAAGCCAGGTGGAATTACATCCATTCAGAACTTGGTGGATGTGATGGATTCAGTTGCATGCAGGGCCTGACAGTTGAGGTGGACGATTAGTCATGTTTAGATTAACTGGTAGCTCCTACCTTACTCTCGAATTAGCTTCAAAATGTTTCCCTTGCCAGATTGAATTTTCTTCGATTTACTCCGTGCAATATATATCAACGTGTTTTGTACATGCACACGTTTAGTTCTATTTTGCACAGCTTAAGATC]




>consensus_5716#0
ATCCTCCAAAACCAAAAGAACTGCCTAGCGCCTAGCGATGCTGCGCGCGGCGGCCACGGC
GGCGCTCCGGCGCCTCCCACAGTCACAGGCCCCGAGGAGACAAGCGCGCGGTCTCCAGTA
CGCGAGCCCGGAGCGGCGACCGCTGGATGGTGCGAGGTGGGCGCTCTACGCGAGGCTGTC
GGCGCACCTGCCGTCGGGTGGAATGGTGGAGGAGCTCGGCCGGTGGCTCCGCGAGAGGCG
CCCGCTCTCGGAGGAGCAGGTCCTCTTCTGCGTCCGCAGGTTCCGCAAGTTCAAGCAGAA
CAAGCACGCCCTCCAGTTGATGGACTGGATGGAAGCTCGTGGAGTGAACTTGGAGCTCAA
GCATCATGCTTTGCGGCTTGACCTTGTTAGCAAACTGAATGGTATACATGCTGCAGAAGA
GTACTTCGGGAGCCTTCCAGATATTTTCAGGTCAAAGCAAACTTATTCCACTCTGCTTAA
CTGCTATGCTGAGCACCGGATGGCAGAGAAAGGCCTAGAACTCTATGAAAATATGAAAGC
GATGAACATTGTTTCAGATATATTGGTGTACAACAATTTGATGTGCTTATACCTGAAGAC
AGATCAACCAGAGAAAATCCCCACTACAGTTGTAAAAATGCAAGAAAGTGGTATACAACC
AAACAAGTTTTCATACTTTGTGCTAACAGAAAGCTACATTATGATGAATGACATAGAGTC
CGCTGAGAAGGTCCTGAAAGAATTGCAGGAGGTAAATTCAGTTCCTTGGTCCTTGTATGC
TACACTTGCTAACGGTTATAATAAGCTGCAGCAGTTTGACAAGGCAGAATTCACCCTTAA
GAAAGCTGAGGAAGTTCTGGACAAGCATGACGTTTTCTCTTGGCATTGTCTTCTCTCCCA
CTATGCCAATTCCGGCAACTTGTCCGAGGTCAAGAGAATCTGGGAGTCTTTAAAGTCTGC
ATTCAAGAAATGCACAAATAGAAGCTATCTAGTGATGCTTAAAGCTCTGAAAAAGTTGGA
TGATTTTGACACCCTGCAGCAAATCTTTCAGGAATGGGAATCAAGCCATGAGCACTATGA
CATGAAAATACCAAATATTATCATCCAAGCTTACCTTGATAAGGGCATGGTAGACAAAGC
TGAGGCTATGCGTCAGACAACCATGGCTCAGGATCATTCCAACTACAGAACATTTTGCAT
ATTCGCAGAATTCTATTTGGAGAAATCTAAAATGAATGAGGCACTGCAGGTCTGGAAAGA
TGCAAAGAAAATGGTGAAGGGGCAGGATTGGGTGCCAGAAAAGCTTGTGAACAGATATCT
GAAGCACTTTGAGGATTCAAAGGATGTGGATGGGATGGAGACGTTCTGTGAATGCCTGAA
GAATCTCGGTCGCCTTGATGCTGAAGCCTATGAAGCCTTGATCCGGACCTATATATCTGT
AGGTAGAACAAATCCATCCATCCCTCAGCGCATGGAAGTTGACAGGGTTGATATTCGGCC
TGAAATGTTTGAATCGCTCAAAGCTATCTCCACTGAAGGAGTTGAGAGTTGAGACTAGGG
GCATGTCTGGATTTTTGCCATCTACTACATTTTGGTAAGGCAACAAAATAGGCAAATACC
AAACCTACTCTAACCATTACAATTATATGGTCACATTTCGTAATTCGGGGAGCAGTCATA
CCCTTGATTTTATTATTTTTTTAAGATCCTTCGCTATGGTATCATCTCATAAGTCATAGC
GAGTGTCACGGACAATTTGTTTGGTGTTGACGCAGGGTGGTTCTCAGGAAAACCCTTTCA
GTTGGAGGTCCTTGAAATGGCTGGAGATGAAATTGATGTCAAGCAGCCCACCCAGCAGCA
CTTTAAGCACTAACAAGTTATAATCATGGCTGAAAATGAACTGAAGGATGATGGTGTTAG
GTTGCAAAATCGTTGGAAGACGGGACACTGGGATATGAAGGAGCTTGATGCTAGCATGAA
TATGCTGCAAAGGGTGGGAGCTCGGTGCTTTACCCACGCAATCACTAACAAGCCAGGTGG
AATTACATCCATTCAGAACTTGGTGGATGTGATGGATTCAGTTGCATGCAGGGCCTGACA
GTTGAGGTGGACGATTAGTCATGTTTAGATTAACTGGTAGCTCCTACCTTACTCTCGAAT
TAGCTTCAAAATGTTTCCCTTGCCAGATTGAATTTTCTTCGATTTACTCCGTGCAATATA
TATCAACGTGTTTTGTACATGCACACGTTTAGTTCTATTTTGCACAGCTTAAGATC

consensusID : consensus_5716#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 947
fasta sequence 
                              [AGCGATGCTGCGCGCGGCGGCCACGGCGGCGCTCCGGCGCCTCCCACAGTCACAGGCCCCGAGGAGACAAGCGCGCGGTCTCCAGTACGCGAGCCCGGAGCGGCGACCGCTGGATGGTGCGAGGTGGGCGCTCTACGCGAGGCTGTCGGCGCACCTGCCGTCGGGTGGAATGGTGGAGGAGCTCGGCCGGTGGCTCCGCGAGAGGCGCCCGCTCTCGGAGGAGCAGGTCCTCTTCTGCGTCCGCAGGTTCCGCAAGTTCAAGCAGAACAAGCACGCCCTCCAGGTGAGCCCCCTCACCCCCACACACACCCACCCCCAGACCCCAGTCCCCTCCCGCGAAAACTCTGGCTTAATTTGGATTGGGGATGTAATGGTAAGGTTTCAGTCGATTGGATCCGGTTGAAACTCCAATTGTTTCGTCCTATCTACACTGTATTTTAGGGTAATTTTGTGTTAACAACTCCGTTTGTAATATTATAGCATTTGCCAATATCTTAGGGAACTATAATGTACTAGTAGTAATCTAGCAGCATAATGTGTTTTCCCCGTTATTTCGAGAATTTGTTAAGGGAAACGCAGGCCAGAACTGAGAACCTATATTTGTTGATTCTTTAACGATTGTGACTGAACTGAATATTTGCTTCTGGTATTCCAAGAACTGTCATACTGGATTAAGCTTAATCCTACGCTTGATTAATGTATTGTAGAAGAGGGGAGAACTCAGAAGGTCCTTGTCTTGTTTAAAGTTAGTCTGTTTTTTGTTGGTCATATGGATCAAAATATATTTTACTGTGGATTTTTCTTCATGATCTTCAGACTACCTAAACTGCCTCTGTATAATTTGATGGATAATACGGAATGGTTGATGTATACCAAGACCAAGATGTTAACCATCAGGTTTCCATTTTTATGTGGAACTTTGCTTGCTTGTATAATTCCTTTTTTCA]

[+] EMBL AK064223             [AGCGATGCTGCGCGCGGCGGCCACGGCGGCGCTCCGGCGCCTCCCACAGTCACAGGCCCCGAGGAGACAAGCGCGCGGTCTCCAGTACGCGAGCCCGGAGCGGCGACCGCTGGATGGTGCGAGGTGGGCGCTCTACGCGAGGCTGTCGGCGCACCTGCCGTCGGGTGGAATGGTGGAGGAGCTCGGCCGGTGGCTCCGCGAGAGGCGCCCGCTCTCGGAGGAGCAGGTCCTCTTCTGCGTCCGCAGGTTCCGCAAGTTCAAGCAGAACAAGCACGCCCTCCAGGTGAGCCCCCTCACCCCCACACACACCCACCCCCAGACCCCAGTCCCCTCCCGCGAAAACTCTGGCTTAATTTGGATTGGGGATGTAATGGTAAGGTTTCAGTCGATTGGATCCGGTTGAAACTCCAATTGTTTCGTCCTATCTACACTGTATTTTAGGGTAATTTTGTGTTAACAACTCCGTTTGTAATATTATAGCATTTGCCAATATCTTAGGGAACTATAATGTACTAGTAGTAATCTAGCAGCATAATGTGTTTTCCCCGTTATTTCGAGAATTTGTTAAGGGAAACGCAGGCCAGAACTGAGAACCTATATTTGTTGATTCTTTAACGATTGTGACTGAACTGAATATTTGCTTCTGGTATTCCAAGAACTGTCATACTGGATTAAGCTTAATCCTACGCTTGATTAATGTATTGTAGAAGAGGGGAGAACTCAGAAGGTCCTTGTCTTGTTTAAAGTTAGTCTGTTTTTTGTTGGTCATATGGATCAAAATATATTTTACTGTGGATTTTTCTTCATGATCTTCAGACTACCTAAACTGCCTCTGTATAATTTGATGGATAATACGGAATGGTTGATGTATACCAAGACCAAGATGTTAACCATCAGGTTTCCATTTTTATGTGGAACTTTGCTTGCTTGTATAATTCCTTTTTTCA]




>consensus_5716#1
AGCGATGCTGCGCGCGGCGGCCACGGCGGCGCTCCGGCGCCTCCCACAGTCACAGGCCCC
GAGGAGACAAGCGCGCGGTCTCCAGTACGCGAGCCCGGAGCGGCGACCGCTGGATGGTGC
GAGGTGGGCGCTCTACGCGAGGCTGTCGGCGCACCTGCCGTCGGGTGGAATGGTGGAGGA
GCTCGGCCGGTGGCTCCGCGAGAGGCGCCCGCTCTCGGAGGAGCAGGTCCTCTTCTGCGT
CCGCAGGTTCCGCAAGTTCAAGCAGAACAAGCACGCCCTCCAGGTGAGCCCCCTCACCCC
CACACACACCCACCCCCAGACCCCAGTCCCCTCCCGCGAAAACTCTGGCTTAATTTGGAT
TGGGGATGTAATGGTAAGGTTTCAGTCGATTGGATCCGGTTGAAACTCCAATTGTTTCGT
CCTATCTACACTGTATTTTAGGGTAATTTTGTGTTAACAACTCCGTTTGTAATATTATAG
CATTTGCCAATATCTTAGGGAACTATAATGTACTAGTAGTAATCTAGCAGCATAATGTGT
TTTCCCCGTTATTTCGAGAATTTGTTAAGGGAAACGCAGGCCAGAACTGAGAACCTATAT
TTGTTGATTCTTTAACGATTGTGACTGAACTGAATATTTGCTTCTGGTATTCCAAGAACT
GTCATACTGGATTAAGCTTAATCCTACGCTTGATTAATGTATTGTAGAAGAGGGGAGAAC
TCAGAAGGTCCTTGTCTTGTTTAAAGTTAGTCTGTTTTTTGTTGGTCATATGGATCAAAA
TATATTTTACTGTGGATTTTTCTTCATGATCTTCAGACTACCTAAACTGCCTCTGTATAA
TTTGATGGATAATACGGAATGGTTGATGTATACCAAGACCAAGATGTTAACCATCAGGTT
TCCATTTTTATGTGGAACTTTGCTTGCTTGTATAATTCCTTTTTTCA

consensusID : consensus_5716#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence 
                              [GGTCTCTGATGTAGTGGCGCCTCTCACAGGCCCCGGGGAGTCAGGCGCGCGGTCTCCAGTACGCGAGCCCGGAGCGGCGACCGCTGGATGGTGCGAGGTGGGCGCTCTACGCGAGGCTGTCGGCGCAGCTGCCGTCGGGTGGAATGGTGGAGGAGCTCGGCCGATGGCTCCGCGAGAGGTGCCCGCTCTCGGAGGAGCAGGTCCTCTTCTGCGTCCGCAGGTTCCTCAAGTTCAAGCAGAACAGGCACGCCCTCCAGGTGAGCCCCCTCACCCCCACCCCCCGGCACACACACCAGACCCCAGTCCCCTCCCGCGAAAACTCTGGCTTAATTTGGATTGGGATGTAATGGTAAGGTTTCAGTCGATTGGATCCGGTTGAAACTCCAATTGTTTCGTCCTATCTACACTGTATTTTAGGGTAATTTTGTGTCAACAACGGAACAACTCCGTTTGTAATATTATAGCATTTGCCAATATCTTAGGGAACTATAATGTACTAGTAGTAATCTAGCAGCATAATGTGTTTTCCTGTAATGCATGCAATGAACTGCAGTTAGCCAGTTATCCAGTGTTGTTTAATCTGTGCAATCATTATGG]

[+] EMBL AK111062             [GGTCTCTGATGTAGTGGCGCCTCTCACAGGCCCCGGGGAGTCAGGCGCGCGGTCTCCAGTACGCGAGCCCGGAGCGGCGACCGCTGGATGGTGCGAGGTGGGCGCTCTACGCGAGGCTGTCGGCGCAGCTGCCGTCGGGTGGAATGGTGGAGGAGCTCGGCCGATGGCTCCGCGAGAGGTGCCCGCTCTCGGAGGAGCAGGTCCTCTTCTGCGTCCGCAGGTTCCTCAAGTTCAAGCAGAACAGGCACGCCCTCCAGGTGAGCCCCCTCACCCCCACCCCCCGGCACACACACCAGACCCCAGTCCCCTCCCGCGAAAACTCTGGCTTAATTTGGATTGGGATGTAATGGTAAGGTTTCAGTCGATTGGATCCGGTTGAAACTCCAATTGTTTCGTCCTATCTACACTGTATTTTAGGGTAATTTTGTGTCAACAACGGAACAACTCCGTTTGTAATATTATAGCATTTGCCAATATCTTAGGGAACTATAATGTACTAGTAGTAATCTAGCAGCATAATGTGTTTTCCTGTAATGCATGCAATGAACTGCAGTTAGCCAGTTATCCAGTGTTGTTTAATCTGTGCAATCATTATGG]




>consensus_5716#2
GGTCTCTGATGTAGTGGCGCCTCTCACAGGCCCCGGGGAGTCAGGCGCGCGGTCTCCAGT
ACGCGAGCCCGGAGCGGCGACCGCTGGATGGTGCGAGGTGGGCGCTCTACGCGAGGCTGT
CGGCGCAGCTGCCGTCGGGTGGAATGGTGGAGGAGCTCGGCCGATGGCTCCGCGAGAGGT
GCCCGCTCTCGGAGGAGCAGGTCCTCTTCTGCGTCCGCAGGTTCCTCAAGTTCAAGCAGA
ACAGGCACGCCCTCCAGGTGAGCCCCCTCACCCCCACCCCCCGGCACACACACCAGACCC
CAGTCCCCTCCCGCGAAAACTCTGGCTTAATTTGGATTGGGATGTAATGGTAAGGTTTCA
GTCGATTGGATCCGGTTGAAACTCCAATTGTTTCGTCCTATCTACACTGTATTTTAGGGT
AATTTTGTGTCAACAACGGAACAACTCCGTTTGTAATATTATAGCATTTGCCAATATCTT
AGGGAACTATAATGTACTAGTAGTAATCTAGCAGCATAATGTGTTTTCCTGTAATGCATG
CAATGAACTGCAGTTAGCCAGTTATCCAGTGTTGTTTAATCTGTGCAATCATTATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5716#1      ---------------------------------AGCGATGCTGCGCGCGGCGGCCACGGC 27
consensus_5716#2      ---------------------------------------------------GGTCTC--T 7
consensus_5716#0      ATCCTCCAAAACCAAAAGAACTGCCTAGCGCCTAGCGATGCTGCGCGCGGCGGCCACGGC 60
                                                                         ** * *   

consensus_5716#1      GGCGCTCCGGCGCCTCCCACAGTCACAGGCCCCGAGGAGACAAGCGCGCGGTCTCCAGTA 87
consensus_5716#2      GATGTAGTGGCGCCTC------TCACAGGCCCCGGGGAGTCAGGCGCGCGGTCTCCAGTA 61
consensus_5716#0      GGCGCTCCGGCGCCTCCCACAGTCACAGGCCCCGAGGAGACAAGCGCGCGGTCTCCAGTA 120
                      *  *    ********      ************ **** ** *****************

consensus_5716#1      CGCGAGCCCGGAGCGGCGACCGCTGGATGGTGCGAGGTGGGCGCTCTACGCGAGGCTGTC 147
consensus_5716#2      CGCGAGCCCGGAGCGGCGACCGCTGGATGGTGCGAGGTGGGCGCTCTACGCGAGGCTGTC 121
consensus_5716#0      CGCGAGCCCGGAGCGGCGACCGCTGGATGGTGCGAGGTGGGCGCTCTACGCGAGGCTGTC 180
                      ************************************************************

consensus_5716#1      GGCGCACCTGCCGTCGGGTGGAATGGTGGAGGAGCTCGGCCGGTGGCTCCGCGAGAGGCG 207
consensus_5716#2      GGCGCAGCTGCCGTCGGGTGGAATGGTGGAGGAGCTCGGCCGATGGCTCCGCGAGAGGTG 181
consensus_5716#0      GGCGCACCTGCCGTCGGGTGGAATGGTGGAGGAGCTCGGCCGGTGGCTCCGCGAGAGGCG 240
                      ****** *********************************** *************** *

consensus_5716#1      CCCGCTCTCGGAGGAGCAGGTCCTCTTCTGCGTCCGCAGGTTCCGCAAGTTCAAGCAGAA 267
consensus_5716#2      CCCGCTCTCGGAGGAGCAGGTCCTCTTCTGCGTCCGCAGGTTCCTCAAGTTCAAGCAGAA 241
consensus_5716#0      CCCGCTCTCGGAGGAGCAGGTCCTCTTCTGCGTCCGCAGGTTCCGCAAGTTCAAGCAGAA 300
                      ******************************************** ***************

consensus_5716#1      CAAGCACGCCCTCCAGGTGAGCCCCCTCACCCCCACACACAC---CCACCC----CCAGA 320
consensus_5716#2      CAGGCACGCCCTCCAGGTGAGCCCCCTCACCCCCACCCCCCG---GCACACACA-CCAGA 297
consensus_5716#0      CAAGCACGCCCTCCAGTTGATGGACTGGATGGAAGCTCGTGGAGTGAACTTGGAGCTCAA 360
                      ** ************* ***    *   *      * *         **      *   *

consensus_5716#1      CCCCAGTCCCCTCCCGCGAAAACTCTGGCTTAATTTGGATTGGGGATGTAATGGTAAGG- 379
consensus_5716#2      CCCCAGTCCCCTCCCGCGAAAACTCTGGCTTAATTTGGATTGGG-ATGTAATGGTAAGG- 355
consensus_5716#0      GCATCATGCTTTGCGGCTTGACCTTGTTAGCAAACTGAATGGTATACATGCTGCAGAAGA 420
                       *    * *  * * **   * **       **  ** ** *   *  *  **   * * 

consensus_5716#1      ---TTTCAG-------TCGATTGGATCCGGTTGAAACTCCAATTGTTTCGTCCTATCTAC 429
consensus_5716#2      ---TTTCAG-------TCGATTGGATCCGGTTGAAACTCCAATTGTTTCGTCCTATCTAC 405
consensus_5716#0      GTACTTCGGGAGCCTTCCAGATATTTTCAGGTCAAAGCAAACTTATTCCACTCTGCTTA- 479
                          *** *        *   *   * * * * ***    * ** ** *   **   ** 

consensus_5716#1      ACTGTATTTTAGGGTAATTTTGTGTTAACAAC--------TCCGTTTGTAA-TATTATAG 480
consensus_5716#2      ACTGTATTTTAGGGTAATTTTGTGTCAACAACGGAACAACTCCGTTTGTAA-TATTATAG 464
consensus_5716#0      ACTGCTATGCTGAGCACCGGATGGCAGAGAAAGGCCTAGAACTCTATGAAAATATGAAAG 539
                      ****   *   * * *       *   * **          *  * ** ** *** * **

consensus_5716#1      CATTTGCCAATATCTTAGGGA--------------ACTATAATGTACTAGTAGT--AATC 524
consensus_5716#2      CATTTGCCAATATCTTAGGGA--------------ACTATAATGTACTAGTAGT--AATC 508
consensus_5716#0      CGATGAACATTGTTTCAGATATATTGGTGTACAACAATTTGATGTGCTTATACCTGAAGA 599
                      *  *   ** * * * **  *              * * * **** **  **    **  

consensus_5716#1      TAGC---AGCATAATGTGTTTTCCCCGTTATTTCGAGAATTTGTTAAGG-GAAACGCAGG 580
consensus_5716#2      TAGC---AGCATAATGTGTTTTCCT----------GTAATGCATGCAAT-GAACTGCAGT 554
consensus_5716#0      CAGATCAACCAGAGAAAATCCCCACTACAGTTGTAAAAATGCAAGAAAGTGGTATACAAC 659
                       **    * ** *     *   *              ***      *   *     **  

consensus_5716#1      CCAGAACTGAGAACCTATATTTGTTGATTCTTTAACG----ATTGTGACTGA-ACTGAAT 635
consensus_5716#2      T---AGCCAGTTATCCAGTGTTGTTTAATCTGTG-CA----ATCATTATGG--------- 597
consensus_5716#0      C---AAACAAGTTTTCATACTTTGTGCTAACAGAAAGCTACATTATGATGAATGACATAG 716
                          *           *   **  *                **  * *            

consensus_5716#1      ATTTGCTTCTGGTATTCCAAGAACTGTCATACTGGATTAAGCTTAATCCTACG--CTTGA 693
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      AGTCCGCTGAGAAGGTCCTGAAAGAATTGCAGGAGGTAAATTCAGTTCCTTGGTCCTTGT 776
                                                                                  

consensus_5716#1      TTAATGTA-TTGTAGAAGAGGGGAGAACTCAGAAGGTCCTTGTCTTGTTTAAAGTTAGTC 752
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      ATGCTACACTTGCTAACGGTTATAATAAGCTGCAGCAGTTTGACAAGGCAGAATTCACCC 836
                                                                                  

consensus_5716#1      TGTTTTTTGTTGGTCA---TATGGATCAAAAT-ATATTTTACTGTGGATTTTTCTTCATG 808
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      TTAAGAAAGCTGAGGAAGTTCTGGACAAGCATGACGTTTTCTCTTGGCATTGTCTTCTCT 896
                                                                                  

consensus_5716#1      ATCTTCAGACTACCTAAACTGCCTCTGTATAATTTGATGGATAATACGGAATGGTTGATG 868
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      CCCACTATGCCAATTCCGGCAACT-TGTCCGAGGTCAAGAGAATCTGGGAGTCTTTAAAG 955
                                                                                  

consensus_5716#1      TATACCAAGACCAAGATGTTAACCATCAGGTTTCCATTTTTATGTGGAACTTTGCTTGC- 927
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      TCTGCATTCAAGAAATGCACAAATAGAAGCTATCTAGTGATGCTTAAAGCTCTGAAAAAG 1015
                                                                                  

consensus_5716#1      TTGTATAATTCCTTTTTTCA---------------------------------------- 947
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      TTGGATGATTTTGACACCCTGCAGCAAATCTTTCAGGAATGGGAATCAAGCCATGAGCAC 1075
                                                                                  

consensus_5716#1      ------------------------------------------------------------
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      TATGACATGAAAATACCAAATATTATCATCCAAGCTTACCTTGATAAGGGCATGGTAGAC 1135
                                                                                  

consensus_5716#1      ------------------------------------------------------------
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      AAAGCTGAGGCTATGCGTCAGACAACCATGGCTCAGGATCATTCCAACTACAGAACATTT 1195
                                                                                  

consensus_5716#1      ------------------------------------------------------------
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      TGCATATTCGCAGAATTCTATTTGGAGAAATCTAAAATGAATGAGGCACTGCAGGTCTGG 1255
                                                                                  

consensus_5716#1      ------------------------------------------------------------
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      AAAGATGCAAAGAAAATGGTGAAGGGGCAGGATTGGGTGCCAGAAAAGCTTGTGAACAGA 1315
                                                                                  

consensus_5716#1      ------------------------------------------------------------
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      TATCTGAAGCACTTTGAGGATTCAAAGGATGTGGATGGGATGGAGACGTTCTGTGAATGC 1375
                                                                                  

consensus_5716#1      ------------------------------------------------------------
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      CTGAAGAATCTCGGTCGCCTTGATGCTGAAGCCTATGAAGCCTTGATCCGGACCTATATA 1435
                                                                                  

consensus_5716#1      ------------------------------------------------------------
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      TCTGTAGGTAGAACAAATCCATCCATCCCTCAGCGCATGGAAGTTGACAGGGTTGATATT 1495
                                                                                  

consensus_5716#1      ------------------------------------------------------------
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      CGGCCTGAAATGTTTGAATCGCTCAAAGCTATCTCCACTGAAGGAGTTGAGAGTTGAGAC 1555
                                                                                  

consensus_5716#1      ------------------------------------------------------------
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      TAGGGGCATGTCTGGATTTTTGCCATCTACTACATTTTGGTAAGGCAACAAAATAGGCAA 1615
                                                                                  

consensus_5716#1      ------------------------------------------------------------
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      ATACCAAACCTACTCTAACCATTACAATTATATGGTCACATTTCGTAATTCGGGGAGCAG 1675
                                                                                  

consensus_5716#1      ------------------------------------------------------------
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      TCATACCCTTGATTTTATTATTTTTTTAAGATCCTTCGCTATGGTATCATCTCATAAGTC 1735
                                                                                  

consensus_5716#1      ------------------------------------------------------------
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      ATAGCGAGTGTCACGGACAATTTGTTTGGTGTTGACGCAGGGTGGTTCTCAGGAAAACCC 1795
                                                                                  

consensus_5716#1      ------------------------------------------------------------
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      TTTCAGTTGGAGGTCCTTGAAATGGCTGGAGATGAAATTGATGTCAAGCAGCCCACCCAG 1855
                                                                                  

consensus_5716#1      ------------------------------------------------------------
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      CAGCACTTTAAGCACTAACAAGTTATAATCATGGCTGAAAATGAACTGAAGGATGATGGT 1915
                                                                                  

consensus_5716#1      ------------------------------------------------------------
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      GTTAGGTTGCAAAATCGTTGGAAGACGGGACACTGGGATATGAAGGAGCTTGATGCTAGC 1975
                                                                                  

consensus_5716#1      ------------------------------------------------------------
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      ATGAATATGCTGCAAAGGGTGGGAGCTCGGTGCTTTACCCACGCAATCACTAACAAGCCA 2035
                                                                                  

consensus_5716#1      ------------------------------------------------------------
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      GGTGGAATTACATCCATTCAGAACTTGGTGGATGTGATGGATTCAGTTGCATGCAGGGCC 2095
                                                                                  

consensus_5716#1      ------------------------------------------------------------
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      TGACAGTTGAGGTGGACGATTAGTCATGTTTAGATTAACTGGTAGCTCCTACCTTACTCT 2155
                                                                                  

consensus_5716#1      ------------------------------------------------------------
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      CGAATTAGCTTCAAAATGTTTCCCTTGCCAGATTGAATTTTCTTCGATTTACTCCGTGCA 2215
                                                                                  

consensus_5716#1      ------------------------------------------------------------
consensus_5716#2      ------------------------------------------------------------
consensus_5716#0      ATATATATCAACGTGTTTTGTACATGCACACGTTTAGTTCTATTTTGCACAGCTTAAGAT 2275
                                                                                  

consensus_5716#1      -
consensus_5716#2      -
consensus_5716#0      C 2276


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)