cluster # 5719

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5719 cluster # 5719 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5719#0 length = 1267 sequences # 2

consensus_5719#1 length = 530 sequences # 1

consensusID : consensus_5719#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1267
fasta sequence

                              [AATTCCTGACTCTTTCGTCAATTTGAAAGGTATTTCTGAGATTGATCTCTCCCGAAACAACTTGAGTGGGGAAATTCCAAACTTTTTTCAATCCTTCAATTCTTTGAAGCTTCTCAACTTGTCCTTCAACAACCTAGAAGGTCAAATGCCAGAAGGGGGGATATTTCAAAATTCTAGTGAGGTATTTGTCCAAGGGAACATTATGTTATGCTCTAGCTCCCCAATGTTGCAATTGCCACTTTGCTTAGCATCATCTAGACACCGGCACACTTCCCGCAATCTAAAGATAATTGGGATTAGTGTGGCTCTTGTTTTGGTCTCTTTGTCATGTGTAGCATTTATTATCTTGAAGAGGAGTAAGAGATCTAAACAATCAGATCGCCATTCATTCACGGAGATGAAGAACTTCTCATATGCTGACTTAGTCAAAGCAACAAATGGTTTCTCTTCAGACAACTTGCTTGGCTCAGGGACATATGGGTCAGTATATAAGGGTATACTTGACTCTGAAGCAAATGGAATTGTTGCTATCAAAGTTTTCAACCTTGATGAACTTGGAGCACCGAAAAGCTTTGTTGCTGAGTGCGAGGCCTTTAGAAACACTCGTCATCGTAATCTTGTG-AGGGTGATTTCCGCATGCTCGACATGGGACAATAAA-GGGAATGATTTCAAAGCTCTTATTATTGAATATATGGCTAATGGCACCCTAGAGAGCTGGATTTATTCCGAAATGAGAGAACCGTTGAGTTTAGACTCCAGAGTAACAATAGCAGTGGACATAGCTGCAGCATTGGATTATTTACATAACCGCTGCATGCCCCCTATAGTCCACTGCGATTTGAAGCCTAGCAATGTGCTTCTAGACAATGCCATGGGTGCCCGTCTCAGTGACTTTGGGTTAGCGAAGTTCCTTCCCACTCACAATTCCACAAGTATTACTAGCTCTACAAGCTTAGGGGGACCAAGAGGCTCAATTGGATATATTGCACCAGGTAACCACATTTTACATGATTTGTCTCTCCTCTTGAACAGGAAATTATTATTTTAATAGGTGCGGTGTCCACCAGCAAATTTTCAACTTTTGGGAGTGTTTTCCCTCCAAAAGTCACTTCGTGCCGTGTCCTACCGCAAAAACCGCGAAGTCACAGAGTCTTGTAGCAAAATTTACCCTTTTTTTTTCTTTCATCCTAAGGGCTGTAATTTTTTTCTCTACTATATTTAATGAAATAGCACAATCTTGTACGGATTTATTTTTAAAAAAAACTTC]

[+] EMBL AK102219             [AATTCCTGACTCTTTCGTCAATTTGAAAGGTATTTCTGAGATTGATCTCTCCCGAAACAACTTGAGTGGGGAAATTCCAAACTTTTTTCAATCCTTCAATTCTTTGAAGCTTCTCAACTTGTCCTTCAACAACCTAGAAGGTCAAATGCCAGAAGGGGGGATATTTCAAAATTCTAGTGAGGTATTTGTCCAAGGGAACATTATGTTATGCTCTAGCTCCCCAATGTTGCAATTGCCACTTTGCTTAGCATCATCTAGACACCGGCACACTTCCCGCAATCTAAAGATAATTGGGATTAGTGTGGCTCTTGTTTTGGTCTCTTTGTCATGTGTAGCATTTATTATCTTGAAGAGGAGTAAGAGATCTAAACAATCAGATCGCCATTCATTCACGGAGATGAAGAACTTCTCATATGCTGACTTAGTCAAAGCAACAAATGGTTTCTCTTCAGACAACTTGCTTGGCTCAGGGACATATGGGTCAGTATATAAGGGTATACTTGACTCTGAAGCAAATGGAATTGTTGCTATCAAAGTTTTCAACCTTGATGAACTTGGAGCACCGAAAAGCTTTGTTGCTGAGTGCGAGGCCTTTAGAAACACTCGTCATCGTAATCTTGTG AGGGTGATTTCCGCATGCTCGACATGGGACAATAAA GGGAATGATTTCAAAGCTCTTATTATTGAATATATGGCTAATGGCACCCTAGAGAGCTGGATTTATTCCGAAATGAGAGAACCGTTGAGTTTAGACTCCAGAGTAACAATAGCAGTGGACATAGCTGCAGCATTGGATTATTTACATAACCGCTGCATGCCCCCTATAGTCCACTGCGATTTGAAGCCTAGCAATGTGCTTCTAGACAATGCCATGGGTGCCCGTCTCAGTGACTTTGGGTTAGCGAAGTTCCTTCCCACTCACAATTCCACAAGTATTACTAGCTCTACAAGCTTAGGGGGACCAAGAGGCTCAATTGGATATATTGCACCAGGTAACCACATTTTACATGATTTGTCTCTCCTCTTGAACAGGAAATTATTATTTTAATAGGTGCGGTGTCCACCAGCAAATTTTCAACTTTTGGGAGTGTTTTCCCTCCAAAAGTCACTTCGTGCCGTGTCCTACCGCAAAAACCGCGAAGTCACAGAGTCTTGTAGCAAAATTTACCCTTTTTTTTTCTTTCATCCTAAGGGCTGTAATTTTTTTCTCTACTATATTTAATGAAATAGCACAATCTTGTACGGATTTATTTTTAAAAAAAACTTC]
[+] EMBL CF309444             [                                                                                      TTCAATCCTTCAATTCTTTGAAGCTTCTCAACTTGTCCTTCAACAACCTAGAAGGTCAAATGCCAGAAGGGGGGATATTTCAAAATTCTAGTGAGGTATTTGTCCAAGGGAACATTATGTTATGCTCTAGCTCCCCAATGTTGCAATTGCCACTTTGCTTAGCATCATCTAGACACCGGCACACTTCCCGCAATCTAAAGATAATTGGGATTAGTGTGGCTCTTGTTTTGGTCTCTTTGTCATGTGTAGCATTTATTATCTTGAAGAGGAGTAAGAGATCTAAACAATCAGATCGCCATTCATTCACGGAGATGAAGAACTTCTCATATGCTGACTTAGTCAAAGCAACAAATGGTTTCTCTTCAGACAACTTGCTTGGCTCAGGGACATATGGGTCAGTATATAAGGGTATACTTGACTCTGAAGCAAATGGAATTGTTGCTATCAAAGTTTTCAACCTTGATGAACTTGGAGCACCGAAAAGCTTTGTTGCTGAGTGCGAGGCCTTTAGAAACACTCGTCATCGTAATCTTGTGAAGGGTGATTTCCGCATGCTCGACATGGGACAATAAAGGGGAATGATTTCAAAGCTCTTATTATTGAATATATGGCTAATGGCACCCTAGAGAGCTGGATTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]




>consensus_5719#0
AATTCCTGACTCTTTCGTCAATTTGAAAGGTATTTCTGAGATTGATCTCTCCCGAAACAA
CTTGAGTGGGGAAATTCCAAACTTTTTTCAATCCTTCAATTCTTTGAAGCTTCTCAACTT
GTCCTTCAACAACCTAGAAGGTCAAATGCCAGAAGGGGGGATATTTCAAAATTCTAGTGA
GGTATTTGTCCAAGGGAACATTATGTTATGCTCTAGCTCCCCAATGTTGCAATTGCCACT
TTGCTTAGCATCATCTAGACACCGGCACACTTCCCGCAATCTAAAGATAATTGGGATTAG
TGTGGCTCTTGTTTTGGTCTCTTTGTCATGTGTAGCATTTATTATCTTGAAGAGGAGTAA
GAGATCTAAACAATCAGATCGCCATTCATTCACGGAGATGAAGAACTTCTCATATGCTGA
CTTAGTCAAAGCAACAAATGGTTTCTCTTCAGACAACTTGCTTGGCTCAGGGACATATGG
GTCAGTATATAAGGGTATACTTGACTCTGAAGCAAATGGAATTGTTGCTATCAAAGTTTT
CAACCTTGATGAACTTGGAGCACCGAAAAGCTTTGTTGCTGAGTGCGAGGCCTTTAGAAA
CACTCGTCATCGTAATCTTGTGAGGGTGATTTCCGCATGCTCGACATGGGACAATAAAGG
GAATGATTTCAAAGCTCTTATTATTGAATATATGGCTAATGGCACCCTAGAGAGCTGGAT
TTATTCCGAAATGAGAGAACCGTTGAGTTTAGACTCCAGAGTAACAATAGCAGTGGACAT
AGCTGCAGCATTGGATTATTTACATAACCGCTGCATGCCCCCTATAGTCCACTGCGATTT
GAAGCCTAGCAATGTGCTTCTAGACAATGCCATGGGTGCCCGTCTCAGTGACTTTGGGTT
AGCGAAGTTCCTTCCCACTCACAATTCCACAAGTATTACTAGCTCTACAAGCTTAGGGGG
ACCAAGAGGCTCAATTGGATATATTGCACCAGGTAACCACATTTTACATGATTTGTCTCT
CCTCTTGAACAGGAAATTATTATTTTAATAGGTGCGGTGTCCACCAGCAAATTTTCAACT
TTTGGGAGTGTTTTCCCTCCAAAAGTCACTTCGTGCCGTGTCCTACCGCAAAAACCGCGA
AGTCACAGAGTCTTGTAGCAAAATTTACCCTTTTTTTTTCTTTCATCCTAAGGGCTGTAA
TTTTTTTCTCTACTATATTTAATGAAATAGCACAATCTTGTACGGATTTATTTTTAAAAA
AAACTTC

consensusID : consensus_5719#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 530
fasta sequence

                              [TTCCGAAATGAGAGAACCGTTGAGTTTAGACTCCAGAGTAACAATAGCAGTGGACATAGCTGCAGCATTGGATTATTTACATAACCGCTGCATGCCCCCTATAGTCCACTGCGATTTGAAGCCTAGCAATGTGCTTCTAGACAATGCCATGGGTGCCCGTCTCAGTGACTTTGGGTTAGTGAAGTTCCTTCCCACTCACAATTCCACAAGTATTACTAGCTCTACAAGCTTAGGGGGACCAAGAGGCTCAATTGGATATATTGCACCAGACATAAAAGCGTGAGAAGAGGAAGACTCTACTGGCATGATTCTGTACTTAATTAGCACATGATCAGAAGGCTGATCGAGAACTAGGTTGTGACCCTAGCCATCTGCCTGTAGGCATGTGAGTTGGACCTACTACTATTTGGTTTCAGCTGTTGTTTGTCTAATAGGACAAGATCCTATTTGTCCTAGTAAAGGTATTAAACTCCTTTGGCTTAAATTCATCTCTATATATGTTTTGTATTGGTTATCAATTTGTAAAAAAA]

[-] EMBL CF309445             [TTCCGAAATGAGAGAACCGTTGAGTTTAGACTCCAGAGTAACAATAGCAGTGGACATAGCTGCAGCATTGGATTATTTACATAACCGCTGCATGCCCCCTATAGTCCACTGCGATTTGAAGCCTAGCAATGTGCTTCTAGACAATGCCATGGGTGCCCGTCTCAGTGACTTTGGGTTAGTGAAGTTCCTTCCCACTCACAATTCCACAAGTATTACTAGCTCTACAAGCTTAGGGGGACCAAGAGGCTCAATTGGATATATTGCACCAGACATAAAAGCGTGAGAAGAGGAAGACTCTACTGGCATGATTCTGTACTTAATTAGCACATGATCAGAAGGCTGATCGAGAACTAGGTTGTGACCCTAGCCATCTGCCTGTAGGCATGTGAGTTGGACCTACTACTATTTGGTTTCAGCTGTTGTTTGTCTAATAGGACAAGATCCTATTTGTCCTAGTAAAGGTATTAAACTCCTTTGGCTTAAATTCATCTCTATATATGTTTTGTATTGGTTATCAATTTGTAAAAAAA]




>consensus_5719#1
TTCCGAAATGAGAGAACCGTTGAGTTTAGACTCCAGAGTAACAATAGCAGTGGACATAGC
TGCAGCATTGGATTATTTACATAACCGCTGCATGCCCCCTATAGTCCACTGCGATTTGAA
GCCTAGCAATGTGCTTCTAGACAATGCCATGGGTGCCCGTCTCAGTGACTTTGGGTTAGT
GAAGTTCCTTCCCACTCACAATTCCACAAGTATTACTAGCTCTACAAGCTTAGGGGGACC
AAGAGGCTCAATTGGATATATTGCACCAGACATAAAAGCGTGAGAAGAGGAAGACTCTAC
TGGCATGATTCTGTACTTAATTAGCACATGATCAGAAGGCTGATCGAGAACTAGGTTGTG
ACCCTAGCCATCTGCCTGTAGGCATGTGAGTTGGACCTACTACTATTTGGTTTCAGCTGT
TGTTTGTCTAATAGGACAAGATCCTATTTGTCCTAGTAAAGGTATTAAACTCCTTTGGCT
TAAATTCATCTCTATATATGTTTTGTATTGGTTATCAATTTGTAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5719#0      AATTCCTGACTCTTTCGTCAATTTGAAAGGTATTTCTGAGATTGATCTCTCCCGAAACAA 60
consensus_5719#1      ------------------------------------------------------------
                                                                                  

consensus_5719#0      CTTGAGTGGGGAAATTCCAAACTTTTTTCAATCCTTCAATTCTTTGAAGCTTCTCAACTT 120
consensus_5719#1      ------------------------------------------------------------
                                                                                  

consensus_5719#0      GTCCTTCAACAACCTAGAAGGTCAAATGCCAGAAGGGGGGATATTTCAAAATTCTAGTGA 180
consensus_5719#1      ------------------------------------------------------------
                                                                                  

consensus_5719#0      GGTATTTGTCCAAGGGAACATTATGTTATGCTCTAGCTCCCCAATGTTGCAATTGCCACT 240
consensus_5719#1      ------------------------------------------------------------
                                                                                  

consensus_5719#0      TTGCTTAGCATCATCTAGACACCGGCACACTTCCCGCAATCTAAAGATAATTGGGATTAG 300
consensus_5719#1      ------------------------------------------------------------
                                                                                  

consensus_5719#0      TGTGGCTCTTGTTTTGGTCTCTTTGTCATGTGTAGCATTTATTATCTTGAAGAGGAGTAA 360
consensus_5719#1      ------------------------------------------------------------
                                                                                  

consensus_5719#0      GAGATCTAAACAATCAGATCGCCATTCATTCACGGAGATGAAGAACTTCTCATATGCTGA 420
consensus_5719#1      ------------------------------------------------------------
                                                                                  

consensus_5719#0      CTTAGTCAAAGCAACAAATGGTTTCTCTTCAGACAACTTGCTTGGCTCAGGGACATATGG 480
consensus_5719#1      ------------------------------------------------------------
                                                                                  

consensus_5719#0      GTCAGTATATAAGGGTATACTTGACTCTGAAGCAAATGGAATTGTTGCTATCAAAGTTTT 540
consensus_5719#1      ------------------------------------------------------------
                                                                                  

consensus_5719#0      CAACCTTGATGAACTTGGAGCACCGAAAAGCTTTGTTGCTGAGTGCGAGGCCTTTAGAAA 600
consensus_5719#1      ------------------------------------------------------------
                                                                                  

consensus_5719#0      CACTCGTCATCGTAATCTTGTGAGGGTGATTTCCGCATGCTCGACATGGGACAATAAAGG 660
consensus_5719#1      ------------------------------------------------------------
                                                                                  

consensus_5719#0      GAATGATTTCAAAGCTCTTATTATTGAATATATGGCTAATGGCACCCTAGAGAGCTGGAT 720
consensus_5719#1      ------------------------------------------------------------
                                                                                  

consensus_5719#0      TTATTCCGAAATGAGAGAACCGTTGAGTTTAGACTCCAGAGTAACAATAGCAGTGGACAT 780
consensus_5719#1      ---TTCCGAAATGAGAGAACCGTTGAGTTTAGACTCCAGAGTAACAATAGCAGTGGACAT 57
                         *********************************************************

consensus_5719#0      AGCTGCAGCATTGGATTATTTACATAACCGCTGCATGCCCCCTATAGTCCACTGCGATTT 840
consensus_5719#1      AGCTGCAGCATTGGATTATTTACATAACCGCTGCATGCCCCCTATAGTCCACTGCGATTT 117
                      ************************************************************

consensus_5719#0      GAAGCCTAGCAATGTGCTTCTAGACAATGCCATGGGTGCCCGTCTCAGTGACTTTGGGTT 900
consensus_5719#1      GAAGCCTAGCAATGTGCTTCTAGACAATGCCATGGGTGCCCGTCTCAGTGACTTTGGGTT 177
                      ************************************************************

consensus_5719#0      AGCGAAGTTCCTTCCCACTCACAATTCCACAAGTATTACTAGCTCTACAAGCTTAGGGGG 960
consensus_5719#1      AGTGAAGTTCCTTCCCACTCACAATTCCACAAGTATTACTAGCTCTACAAGCTTAGGGGG 237
                      ** *********************************************************

consensus_5719#0      ACCAAGAGGCTCAATTGGATATATTGCACCAGGTAACCACATTTTACATGATTTGTCTCT 1020
consensus_5719#1      ACCAAGAGGCTCAATTGGATATATTGCACCAGACATAAAAGCGTGAGAAGAGG-AAGACT 296
                      ********************************  *   *    * * * **       **

consensus_5719#0      CCTCTTGAACAGGAAATTATTATTTTAATAGGTGCGGTGTCCACCAGCAAATTTTCAACT 1080
consensus_5719#1      CTACTGGCATG----ATTCTGTACTTAATTAGCACATGATCAGAAGGCTGATCGAGAACT 352
                      *  ** * *      *** *    *****  *  *    **     **  **    ****

consensus_5719#0      TTTGGGAGTGTTTTCCCTCCAAAAGTCACTTCGTGCCGTGTCCTACCGCAAAAACCGCGA 1140
consensus_5719#1      ----AGGTTGTGACCCTAGCCATCTGCCTGTAGGCATGTGAGTTGGACCTACTACTATTT 408
                           *  ***   **   * *    *   * *    ***   *    * *  **     

consensus_5719#0      AGTCACAGAGTCTTGTAGCAAAATTTACCCTTTTTTTTTCTTTCATCCTAAGGGCTGTAA 1200
consensus_5719#1      GGTTTCAGCTGTTGTTTGTCTAATAGGACAAGATCCTATTTGTCCTAGTAAAGGTATTAA 468
                       **  ***    *  * *   ***    *    *  * * * ** *  *** **   ***

consensus_5719#0      TTTTTTTCTCTACTATATTTAATGAAATAGCACAATCTTGTACGGATTT---ATTTTTAA 1257
consensus_5719#1      ACTCCTT-TGGCTTAAATTCATCTCTATA-TATG-TTTTGTATTGGTTATCAATTTGTAA 525
                        *  ** *    ** *** *     ***  *   * *****  * **    **** ***

consensus_5719#0      AAAAAACTTC 1267
consensus_5719#1      AAAAA----- 530
                      *****