These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5719#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1267 fasta sequence [AATTCCTGACTCTTTCGTCAATTTGAAAGGTATTTCTGAGATTGATCTCTCCCGAAACAACTTGAGTGGGGAAATTCCAAACTTTTTTCAATCCTTCAATTCTTTGAAGCTTCTCAACTTGTCCTTCAACAACCTAGAAGGTCAAATGCCAGAAGGGGGGATATTTCAAAATTCTAGTGAGGTATTTGTCCAAGGGAACATTATGTTATGCTCTAGCTCCCCAATGTTGCAATTGCCACTTTGCTTAGCATCATCTAGACACCGGCACACTTCCCGCAATCTAAAGATAATTGGGATTAGTGTGGCTCTTGTTTTGGTCTCTTTGTCATGTGTAGCATTTATTATCTTGAAGAGGAGTAAGAGATCTAAACAATCAGATCGCCATTCATTCACGGAGATGAAGAACTTCTCATATGCTGACTTAGTCAAAGCAACAAATGGTTTCTCTTCAGACAACTTGCTTGGCTCAGGGACATATGGGTCAGTATATAAGGGTATACTTGACTCTGAAGCAAATGGAATTGTTGCTATCAAAGTTTTCAACCTTGATGAACTTGGAGCACCGAAAAGCTTTGTTGCTGAGTGCGAGGCCTTTAGAAACACTCGTCATCGTAATCTTGTG-AGGGTGATTTCCGCATGCTCGACATGGGACAATAAA-GGGAATGATTTCAAAGCTCTTATTATTGAATATATGGCTAATGGCACCCTAGAGAGCTGGATTTATTCCGAAATGAGAGAACCGTTGAGTTTAGACTCCAGAGTAACAATAGCAGTGGACATAGCTGCAGCATTGGATTATTTACATAACCGCTGCATGCCCCCTATAGTCCACTGCGATTTGAAGCCTAGCAATGTGCTTCTAGACAATGCCATGGGTGCCCGTCTCAGTGACTTTGGGTTAGCGAAGTTCCTTCCCACTCACAATTCCACAAGTATTACTAGCTCTACAAGCTTAGGGGGACCAAGAGGCTCAATTGGATATATTGCACCAGGTAACCACATTTTACATGATTTGTCTCTCCTCTTGAACAGGAAATTATTATTTTAATAGGTGCGGTGTCCACCAGCAAATTTTCAACTTTTGGGAGTGTTTTCCCTCCAAAAGTCACTTCGTGCCGTGTCCTACCGCAAAAACCGCGAAGTCACAGAGTCTTGTAGCAAAATTTACCCTTTTTTTTTCTTTCATCCTAAGGGCTGTAATTTTTTTCTCTACTATATTTAATGAAATAGCACAATCTTGTACGGATTTATTTTTAAAAAAAACTTC] [+] EMBL AK102219 [AATTCCTGACTCTTTCGTCAATTTGAAAGGTATTTCTGAGATTGATCTCTCCCGAAACAACTTGAGTGGGGAAATTCCAAACTTTTTTCAATCCTTCAATTCTTTGAAGCTTCTCAACTTGTCCTTCAACAACCTAGAAGGTCAAATGCCAGAAGGGGGGATATTTCAAAATTCTAGTGAGGTATTTGTCCAAGGGAACATTATGTTATGCTCTAGCTCCCCAATGTTGCAATTGCCACTTTGCTTAGCATCATCTAGACACCGGCACACTTCCCGCAATCTAAAGATAATTGGGATTAGTGTGGCTCTTGTTTTGGTCTCTTTGTCATGTGTAGCATTTATTATCTTGAAGAGGAGTAAGAGATCTAAACAATCAGATCGCCATTCATTCACGGAGATGAAGAACTTCTCATATGCTGACTTAGTCAAAGCAACAAATGGTTTCTCTTCAGACAACTTGCTTGGCTCAGGGACATATGGGTCAGTATATAAGGGTATACTTGACTCTGAAGCAAATGGAATTGTTGCTATCAAAGTTTTCAACCTTGATGAACTTGGAGCACCGAAAAGCTTTGTTGCTGAGTGCGAGGCCTTTAGAAACACTCGTCATCGTAATCTTGTG AGGGTGATTTCCGCATGCTCGACATGGGACAATAAA GGGAATGATTTCAAAGCTCTTATTATTGAATATATGGCTAATGGCACCCTAGAGAGCTGGATTTATTCCGAAATGAGAGAACCGTTGAGTTTAGACTCCAGAGTAACAATAGCAGTGGACATAGCTGCAGCATTGGATTATTTACATAACCGCTGCATGCCCCCTATAGTCCACTGCGATTTGAAGCCTAGCAATGTGCTTCTAGACAATGCCATGGGTGCCCGTCTCAGTGACTTTGGGTTAGCGAAGTTCCTTCCCACTCACAATTCCACAAGTATTACTAGCTCTACAAGCTTAGGGGGACCAAGAGGCTCAATTGGATATATTGCACCAGGTAACCACATTTTACATGATTTGTCTCTCCTCTTGAACAGGAAATTATTATTTTAATAGGTGCGGTGTCCACCAGCAAATTTTCAACTTTTGGGAGTGTTTTCCCTCCAAAAGTCACTTCGTGCCGTGTCCTACCGCAAAAACCGCGAAGTCACAGAGTCTTGTAGCAAAATTTACCCTTTTTTTTTCTTTCATCCTAAGGGCTGTAATTTTTTTCTCTACTATATTTAATGAAATAGCACAATCTTGTACGGATTTATTTTTAAAAAAAACTTC] [+] EMBL CF309444 [ TTCAATCCTTCAATTCTTTGAAGCTTCTCAACTTGTCCTTCAACAACCTAGAAGGTCAAATGCCAGAAGGGGGGATATTTCAAAATTCTAGTGAGGTATTTGTCCAAGGGAACATTATGTTATGCTCTAGCTCCCCAATGTTGCAATTGCCACTTTGCTTAGCATCATCTAGACACCGGCACACTTCCCGCAATCTAAAGATAATTGGGATTAGTGTGGCTCTTGTTTTGGTCTCTTTGTCATGTGTAGCATTTATTATCTTGAAGAGGAGTAAGAGATCTAAACAATCAGATCGCCATTCATTCACGGAGATGAAGAACTTCTCATATGCTGACTTAGTCAAAGCAACAAATGGTTTCTCTTCAGACAACTTGCTTGGCTCAGGGACATATGGGTCAGTATATAAGGGTATACTTGACTCTGAAGCAAATGGAATTGTTGCTATCAAAGTTTTCAACCTTGATGAACTTGGAGCACCGAAAAGCTTTGTTGCTGAGTGCGAGGCCTTTAGAAACACTCGTCATCGTAATCTTGTGAAGGGTGATTTCCGCATGCTCGACATGGGACAATAAAGGGGAATGATTTCAAAGCTCTTATTATTGAATATATGGCTAATGGCACCCTAGAGAGCTGGATTTA ] consensusID : consensus_5719#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence [TTCCGAAATGAGAGAACCGTTGAGTTTAGACTCCAGAGTAACAATAGCAGTGGACATAGCTGCAGCATTGGATTATTTACATAACCGCTGCATGCCCCCTATAGTCCACTGCGATTTGAAGCCTAGCAATGTGCTTCTAGACAATGCCATGGGTGCCCGTCTCAGTGACTTTGGGTTAGTGAAGTTCCTTCCCACTCACAATTCCACAAGTATTACTAGCTCTACAAGCTTAGGGGGACCAAGAGGCTCAATTGGATATATTGCACCAGACATAAAAGCGTGAGAAGAGGAAGACTCTACTGGCATGATTCTGTACTTAATTAGCACATGATCAGAAGGCTGATCGAGAACTAGGTTGTGACCCTAGCCATCTGCCTGTAGGCATGTGAGTTGGACCTACTACTATTTGGTTTCAGCTGTTGTTTGTCTAATAGGACAAGATCCTATTTGTCCTAGTAAAGGTATTAAACTCCTTTGGCTTAAATTCATCTCTATATATGTTTTGTATTGGTTATCAATTTGTAAAAAAA] [-] EMBL CF309445 [TTCCGAAATGAGAGAACCGTTGAGTTTAGACTCCAGAGTAACAATAGCAGTGGACATAGCTGCAGCATTGGATTATTTACATAACCGCTGCATGCCCCCTATAGTCCACTGCGATTTGAAGCCTAGCAATGTGCTTCTAGACAATGCCATGGGTGCCCGTCTCAGTGACTTTGGGTTAGTGAAGTTCCTTCCCACTCACAATTCCACAAGTATTACTAGCTCTACAAGCTTAGGGGGACCAAGAGGCTCAATTGGATATATTGCACCAGACATAAAAGCGTGAGAAGAGGAAGACTCTACTGGCATGATTCTGTACTTAATTAGCACATGATCAGAAGGCTGATCGAGAACTAGGTTGTGACCCTAGCCATCTGCCTGTAGGCATGTGAGTTGGACCTACTACTATTTGGTTTCAGCTGTTGTTTGTCTAATAGGACAAGATCCTATTTGTCCTAGTAAAGGTATTAAACTCCTTTGGCTTAAATTCATCTCTATATATGTTTTGTATTGGTTATCAATTTGTAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5719#0 AATTCCTGACTCTTTCGTCAATTTGAAAGGTATTTCTGAGATTGATCTCTCCCGAAACAA 60 consensus_5719#1 ------------------------------------------------------------ consensus_5719#0 CTTGAGTGGGGAAATTCCAAACTTTTTTCAATCCTTCAATTCTTTGAAGCTTCTCAACTT 120 consensus_5719#1 ------------------------------------------------------------ consensus_5719#0 GTCCTTCAACAACCTAGAAGGTCAAATGCCAGAAGGGGGGATATTTCAAAATTCTAGTGA 180 consensus_5719#1 ------------------------------------------------------------ consensus_5719#0 GGTATTTGTCCAAGGGAACATTATGTTATGCTCTAGCTCCCCAATGTTGCAATTGCCACT 240 consensus_5719#1 ------------------------------------------------------------ consensus_5719#0 TTGCTTAGCATCATCTAGACACCGGCACACTTCCCGCAATCTAAAGATAATTGGGATTAG 300 consensus_5719#1 ------------------------------------------------------------ consensus_5719#0 TGTGGCTCTTGTTTTGGTCTCTTTGTCATGTGTAGCATTTATTATCTTGAAGAGGAGTAA 360 consensus_5719#1 ------------------------------------------------------------ consensus_5719#0 GAGATCTAAACAATCAGATCGCCATTCATTCACGGAGATGAAGAACTTCTCATATGCTGA 420 consensus_5719#1 ------------------------------------------------------------ consensus_5719#0 CTTAGTCAAAGCAACAAATGGTTTCTCTTCAGACAACTTGCTTGGCTCAGGGACATATGG 480 consensus_5719#1 ------------------------------------------------------------ consensus_5719#0 GTCAGTATATAAGGGTATACTTGACTCTGAAGCAAATGGAATTGTTGCTATCAAAGTTTT 540 consensus_5719#1 ------------------------------------------------------------ consensus_5719#0 CAACCTTGATGAACTTGGAGCACCGAAAAGCTTTGTTGCTGAGTGCGAGGCCTTTAGAAA 600 consensus_5719#1 ------------------------------------------------------------ consensus_5719#0 CACTCGTCATCGTAATCTTGTGAGGGTGATTTCCGCATGCTCGACATGGGACAATAAAGG 660 consensus_5719#1 ------------------------------------------------------------ consensus_5719#0 GAATGATTTCAAAGCTCTTATTATTGAATATATGGCTAATGGCACCCTAGAGAGCTGGAT 720 consensus_5719#1 ------------------------------------------------------------ consensus_5719#0 TTATTCCGAAATGAGAGAACCGTTGAGTTTAGACTCCAGAGTAACAATAGCAGTGGACAT 780 consensus_5719#1 ---TTCCGAAATGAGAGAACCGTTGAGTTTAGACTCCAGAGTAACAATAGCAGTGGACAT 57 ********************************************************* consensus_5719#0 AGCTGCAGCATTGGATTATTTACATAACCGCTGCATGCCCCCTATAGTCCACTGCGATTT 840 consensus_5719#1 AGCTGCAGCATTGGATTATTTACATAACCGCTGCATGCCCCCTATAGTCCACTGCGATTT 117 ************************************************************ consensus_5719#0 GAAGCCTAGCAATGTGCTTCTAGACAATGCCATGGGTGCCCGTCTCAGTGACTTTGGGTT 900 consensus_5719#1 GAAGCCTAGCAATGTGCTTCTAGACAATGCCATGGGTGCCCGTCTCAGTGACTTTGGGTT 177 ************************************************************ consensus_5719#0 AGCGAAGTTCCTTCCCACTCACAATTCCACAAGTATTACTAGCTCTACAAGCTTAGGGGG 960 consensus_5719#1 AGTGAAGTTCCTTCCCACTCACAATTCCACAAGTATTACTAGCTCTACAAGCTTAGGGGG 237 ** ********************************************************* consensus_5719#0 ACCAAGAGGCTCAATTGGATATATTGCACCAGGTAACCACATTTTACATGATTTGTCTCT 1020 consensus_5719#1 ACCAAGAGGCTCAATTGGATATATTGCACCAGACATAAAAGCGTGAGAAGAGG-AAGACT 296 ******************************** * * * * * ** ** consensus_5719#0 CCTCTTGAACAGGAAATTATTATTTTAATAGGTGCGGTGTCCACCAGCAAATTTTCAACT 1080 consensus_5719#1 CTACTGGCATG----ATTCTGTACTTAATTAGCACATGATCAGAAGGCTGATCGAGAACT 352 * ** * * *** * ***** * * ** ** ** **** consensus_5719#0 TTTGGGAGTGTTTTCCCTCCAAAAGTCACTTCGTGCCGTGTCCTACCGCAAAAACCGCGA 1140 consensus_5719#1 ----AGGTTGTGACCCTAGCCATCTGCCTGTAGGCATGTGAGTTGGACCTACTACTATTT 408 * *** ** * * * * * *** * * * ** consensus_5719#0 AGTCACAGAGTCTTGTAGCAAAATTTACCCTTTTTTTTTCTTTCATCCTAAGGGCTGTAA 1200 consensus_5719#1 GGTTTCAGCTGTTGTTTGTCTAATAGGACAAGATCCTATTTGTCCTAGTAAAGGTATTAA 468 ** *** * * * *** * * * * * ** * *** ** *** consensus_5719#0 TTTTTTTCTCTACTATATTTAATGAAATAGCACAATCTTGTACGGATTT---ATTTTTAA 1257 consensus_5719#1 ACTCCTT-TGGCTTAAATTCATCTCTATA-TATG-TTTTGTATTGGTTATCAATTTGTAA 525 * ** * ** *** * *** * * ***** * ** **** *** consensus_5719#0 AAAAAACTTC 1267 consensus_5719#1 AAAAA----- 530 ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||