cluster # 5727

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Oryza sativa
cluster # 5727 cluster # 5727 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5727#0 length = 1342 sequences # 2

consensus_5727#1 length = 413 sequences # 1

consensusID : consensus_5727#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1342
fasta sequence

                              [AGCAGCAGCACCGCGGCCGCATGTGGGCCGCCTCACCGGCCTTCCGCAGGCGCCTCTTCCTCCTCCGTTCCCTTTCCCCCTCCCCCTGCGCCGCCCTCCCCGGCAACGCCGCCTGCTCCTCCTCCCCCTCGCCGTCGACCTCCATTCGGGTCAACGCGATGTCGGCATCGGGCCCCGTGTACGAGGCGGACGCTGAGGCGGTGGTCCGCCGGATCACCCCGCCGCTCGACCGCGCGCGCCACAAGGGCCAGGCAGGGAAAATTGCTGTAATTGGTGGATGTCGTGAGTACACTGGTGCTCCCTATTTTGCAGCGATTTCTGCCTTGAAAGTTGGTGCAGATCTCTCACATGTTTTCTGCACAAGAGATGCTGCAACGGTAATAAAGAGTTATAGCCCTGAGCTGATTGTACATCCAATACTAGAGGAATCTTACAGTGTAAGCGATGGTGAGAGAGAATCTGTTTCTTCTAGAATTCTCACAGAAGTAGCAAAGTGGATGGAGCGCTTTGATTGCATCGTTGTTGGTCCTGGCCTTGGAAGGGACTCATTTCTTCTGGACTGTGTAAGTAATATCATGAGACATGCACGGCAGGCAAATATTCCAACAGTCGTTGACGGGGATGGCCTTTTCCTTATAACCAATAACCTTAGTCTTGTTGAGGGTAACTTGCTTGCCATCCTAACACCAAATGTATACGAGTACAAACGTCTTGTCCAGAAGGTTCTTAACTGTGAAGTAAATGAGGAAAACGCTTCTGAACAACTTACTGCACTATGCCAAAAAAATCGGTGGCATAACCATCATGCGGAAAGGAAAAGCAGATATAATCAGTGATGGCAAAACTGTAACACAAGTAAGTACCTTTGGTTCCCCAAGGAGATGTGGTGGTCAAGGTGACATTCTTTCAGGAAGTGTTGCAGTATTTGCATCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAGCGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAAAGCTGCATCACATGCTTTTGAGAAGAACAAGAGATCAACTGTCACCACTGACATCATTGAGTTACTGGGCAAAAGCTTAGAAGATATATGCCCTGCTGGTCATTAGTTTAGATCTTTACCATCATTGGTGGTACGGCGCCTTAGCACCTGTAATAATGGTAATCCATATGTTCGGATACCAGTCTCTCCCTGCTTAATGTACATGTTTCTTGACTGAAAAGATGGTGTTACAATGCTTGGTTTTGTTTAGCCTCCGTTTTGCTCAGAAGAATTCTACAGAATGAATAATGAATTGCCCCATAAATGGGGCT]

[+] EMBL AK103343             [AGCAGCAGCACCGCGGCCGCATGTGGGCCGCCTCACCGGCCTTCCGCAGGCGCCTCTTCCTCCTCCGTTCCCTTTCCCCCTCCCCCTGCGCCGCCCTCCCCGGCAACGCCGCCTGCTCCTCCTCCCCCTCGCCGTCGACCTCCATTCGGGTCAACGCGATGTCGGCATCGGGCCCCGTGTACGAGGCGGACGCTGAGGCGGTGGTCCGCCGGATCACCCCGCCGCTCGACCGCGCGCGCCACAAGGGCCAGGCAGGGAAAATTGCTGTAATTGGTGGATGTCGTGAGTACACTGGTGCTCCCTATTTTGCAGCGATTTCTGCCTTGAAAGTTGGTGCAGATCTCTCACATGTTTTCTGCACAAGAGATGCTGCAACGGTAATAAAGAGTTATAGCCCTGAGCTGATTGTACATCCAATACTAGAGGAATCTTACAGTGTAAGCGATGGTGAGAGAGAATCTGTTTCTTCTAGAATTCTCACAGAAGTAGCAAAGTGGATGGAGCGCTTTGATTGCATCGTTGTTGGTCCTGGCCTTGGAAGGGACTCATTTCTTCTGGACTGTGTAAGTAATATCATGAGACATGCACGGCAGGCAAATATTCCAACAGTCGTTGACGGGGATGGCCTTTTCCTTATAACCAATAACCTTAGTCTTGTTGAGGGTAACTTGCTTGCCATCCTAACACCAAATGTATACGAGTACAAACGTCTTGTCCAGAAGGTTCTTAACTGTGAAGTAAATGAGGAAAACGCTTCTGAACAACTTACTGCACTATGCCAAAAAAATCGGTGGCATAACCATCATGCGGAAAGGAAAAGCAGATATAATCAGTGATGGCAAAACTGTAACACAAGTAAGTACCTTTGGTTCCCCAAGGAGATGTGGTGGTCAAGGTGACATTCTTTCAGGAAGTGTTGCAGTATTTGCATCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAGCGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAAAGCTGCATCACATGCTTTTGAGAAGAACAAGAGATCAACTGTCACCACTGACATCATTGAGTTACTGGGCAAAAGCTTAGAAGATATATGCCCTGCTGGTCATTAGTTTAGATCTTTACCATCATTGGTGGTACGGCGCCTTAGCACCTGTAATAATGGTAATCCATATGTTCGGATACCAGTCTCTCCCTGCTTAATGTACATGTTTCTTGACTGAAAAGATGGTGTTACAATGCTTGGTTTTGTTTAGCCTCCGTTTTGCTCAGAAGAATTCTACAGAATGAATAATGAATTGCCCCATAAATGGGGCT]
[+] EMBL AU058051             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTCCATCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAGCGTGAATCCNATGATGCTTGGNTGCATTGCTGGCTCTCTACTACTTAGGAAAGCTGCATCACATGCTTTTAAGAAGAACAAGAGATCAACTGTCACCACTGACATCATTGAGTTACTGGGCAAAAGCTTGGAAGATATATNCCCTGCTGGTCATTAGTTTAGATCTTTACCATCATTGGTGGTACGGCGCCTTAGCACCTGTAATAATGGTAATCCATATGTNCGGATACCAGTCTCTCCCTGCTTAATGTACATGTTTCTTGACTNAAAAGATGGTGTTACAAaaaaaaaa                                                                      ]




>consensus_5727#0
AGCAGCAGCACCGCGGCCGCATGTGGGCCGCCTCACCGGCCTTCCGCAGGCGCCTCTTCC
TCCTCCGTTCCCTTTCCCCCTCCCCCTGCGCCGCCCTCCCCGGCAACGCCGCCTGCTCCT
CCTCCCCCTCGCCGTCGACCTCCATTCGGGTCAACGCGATGTCGGCATCGGGCCCCGTGT
ACGAGGCGGACGCTGAGGCGGTGGTCCGCCGGATCACCCCGCCGCTCGACCGCGCGCGCC
ACAAGGGCCAGGCAGGGAAAATTGCTGTAATTGGTGGATGTCGTGAGTACACTGGTGCTC
CCTATTTTGCAGCGATTTCTGCCTTGAAAGTTGGTGCAGATCTCTCACATGTTTTCTGCA
CAAGAGATGCTGCAACGGTAATAAAGAGTTATAGCCCTGAGCTGATTGTACATCCAATAC
TAGAGGAATCTTACAGTGTAAGCGATGGTGAGAGAGAATCTGTTTCTTCTAGAATTCTCA
CAGAAGTAGCAAAGTGGATGGAGCGCTTTGATTGCATCGTTGTTGGTCCTGGCCTTGGAA
GGGACTCATTTCTTCTGGACTGTGTAAGTAATATCATGAGACATGCACGGCAGGCAAATA
TTCCAACAGTCGTTGACGGGGATGGCCTTTTCCTTATAACCAATAACCTTAGTCTTGTTG
AGGGTAACTTGCTTGCCATCCTAACACCAAATGTATACGAGTACAAACGTCTTGTCCAGA
AGGTTCTTAACTGTGAAGTAAATGAGGAAAACGCTTCTGAACAACTTACTGCACTATGCC
AAAAAAATCGGTGGCATAACCATCATGCGGAAAGGAAAAGCAGATATAATCAGTGATGGC
AAAACTGTAACACAAGTAAGTACCTTTGGTTCCCCAAGGAGATGTGGTGGTCAAGGTGAC
ATTCTTTCAGGAAGTGTTGCAGTATTTGCATCATGGGCACGTCACTTTCTCCTGACGAAT
GAGTACCCTACAGAGAAGAGCGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTA
CTACTTAGGAAAGCTGCATCACATGCTTTTGAGAAGAACAAGAGATCAACTGTCACCACT
GACATCATTGAGTTACTGGGCAAAAGCTTAGAAGATATATGCCCTGCTGGTCATTAGTTT
AGATCTTTACCATCATTGGTGGTACGGCGCCTTAGCACCTGTAATAATGGTAATCCATAT
GTTCGGATACCAGTCTCTCCCTGCTTAATGTACATGTTTCTTGACTGAAAAGATGGTGTT
ACAATGCTTGGTTTTGTTTAGCCTCCGTTTTGCTCAGAAGAATTCTACAGAATGAATAAT
GAATTGCCCCATAAATGGGGCT

consensusID : consensus_5727#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 413
fasta sequence

                              [CAGTGTAAGCGATGGTGAGAGAGAATCTGTTTCTTCTAGAATTCTCACAGAAGTAGCAAAGTGGATGGAGCGCTTTGATTGCATCGTTGTTGGTCCTGGCCTTGGAAGGGACTCATTTCTTCTGTTTGCACCTTTGGTCAAGCATTGTTGCAACTGTGTCTACCTCCATTCCTAATTGCATTAGTAGCTCCCAGGGCCAAGGATAGACCAGATTGGTGTTGATAACTCATCCTGTATTTCTGAAGATCTACAGTTTGAAATTATAAAGTTCCTTGATAGACTGTGTAAGTAATATCATGAGACATGCACGGCAGGCAAATATTCCAACAGTCGTTGACGGGGATGGCCTTTTCCTTATAACCAATAACCTTAGTCTTGTTGAGGGTAACTTGCTTGCCATCCTAACACCAAAT]

[+] EMBL CA882803             [CAGTGTAAGCGATGGTGAGAGAGAATCTGTTTCTTCTAGAATTCTCACAGAAGTAGCAAAGTGGATGGAGCGCTTTGATTGCATCGTTGTTGGTCCTGGCCTTGGAAGGGACTCATTTCTTCTGTTTGCACCTTTGGTCAAGCATTGTTGCAACTGTGTCTACCTCCATTCCTAATTGCATTAGTAGCTCCCAGGGCCAAGGATAGACCAGATTGGTGTTGATAACTCATCCTGTATTTCTGAAGATCTACAGTTTGAAATTATAAAGTTCCTTGATAGACTGTGTAAGTAATATCATGAGACATGCACGGCAGGCAAATATTCCAACAGTCGTTGACGGGGATGGCCTTTTCCTTATAACCAATAACCTTAGTCTTGTTGAGGGTAACTTGCTTGCCATCCTAACACCAAAT]




>consensus_5727#1
CAGTGTAAGCGATGGTGAGAGAGAATCTGTTTCTTCTAGAATTCTCACAGAAGTAGCAAA
GTGGATGGAGCGCTTTGATTGCATCGTTGTTGGTCCTGGCCTTGGAAGGGACTCATTTCT
TCTGTTTGCACCTTTGGTCAAGCATTGTTGCAACTGTGTCTACCTCCATTCCTAATTGCA
TTAGTAGCTCCCAGGGCCAAGGATAGACCAGATTGGTGTTGATAACTCATCCTGTATTTC
TGAAGATCTACAGTTTGAAATTATAAAGTTCCTTGATAGACTGTGTAAGTAATATCATGA
GACATGCACGGCAGGCAAATATTCCAACAGTCGTTGACGGGGATGGCCTTTTCCTTATAA
CCAATAACCTTAGTCTTGTTGAGGGTAACTTGCTTGCCATCCTAACACCAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5727#0      AGCAGCAGCACCGCGGCCGCATGTGGGCCGCCTCACCGGCCTTCCGCAGGCGCCTCTTCC 60
consensus_5727#1      ------------------------------------------------------------
                                                                                  

consensus_5727#0      TCCTCCGTTCCCTTTCCCCCTCCCCCTGCGCCGCCCTCCCCGGCAACGCCGCCTGCTCCT 120
consensus_5727#1      ------------------------------------------------------------
                                                                                  

consensus_5727#0      CCTCCCCCTCGCCGTCGACCTCCATTCGGGTCAACGCGATGTCGGCATCGGGCCCCGTGT 180
consensus_5727#1      ------------------------------------------------------------
                                                                                  

consensus_5727#0      ACGAGGCGGACGCTGAGGCGGTGGTCCGCCGGATCACCCCGCCGCTCGACCGCGCGCGCC 240
consensus_5727#1      ------------------------------------------------------------
                                                                                  

consensus_5727#0      ACAAGGGCCAGGCAGGGAAAATTGCTGTAATTGGTGGATGTCGTGAGTACACTGGTGCTC 300
consensus_5727#1      ----------------------CAGTGTAAGCGATGGTGAGAGAGAATCTGTTTCTTCTA 38
                                               *****  * ***     * ** *    *  * ** 

consensus_5727#0      CCTATTTTGCAGCGATTTCTGCCTTGAAAGTTGGTGCAGATCTCTCACATGTTTTCTGCA 360
consensus_5727#1      GAATTCTCACAGAAGTAGC-------AAAGTGGATGGAGCGCTTT-----GATTGCATCG 86
                          * *  ***   *  *       ***** * ** **  ** *     * ** *  * 

consensus_5727#0      CAAGAGATGCTGCAACGGTAATAAAGAGTTATAGCCCTGAGCTGATTGTACATCCAATAC 420
consensus_5727#1      TTGTTGGTCCTG--GCCTTGGAAGGGACTCATTTCTT----CTGTTTGCACCTTTGGTCA 140
                           * * ***   *  *   *  ** * **  *      *** *** ** *    *  

consensus_5727#0      TAGAGGAATCTTACAGTGTAAGCGATGGTGAGAGA--GAATCTGTTTCTTCTAGAATTCT 478
consensus_5727#1      AGCATTGTTGCAACTGTGTCTACCTCCATTCCTAATTGCATTAGTAGCTCCCAGGGC--- 197
                         *    *   ** ****   *     *     *  * **  **  ** * **      

consensus_5727#0      CACAGAAGTAGCAAAGTGG-ATGGAGCGCTTTGATTGCATCGTTGTTGGTCCTGGCCTTG 537
consensus_5727#1      CAAGGATAGACCAGATTGGTGTTGATAACTCATCCTGTATTTCTGAAGATCTACAGTTTG 257
                      **  **   * ** * ***  * **   **     ** **   **  * **      ***

consensus_5727#0      GAAGGGACTCATTTCTTC-TGGACTGTGTAAGTAATATCATGAGACATGCACGGCAGGCA 596
consensus_5727#1      AAATTATAAAGTTCCTTGATAGACTGTGTAAGTAATATCATGAGACATGCACGGCAGGCA 317
                       **        ** ***  * ***************************************

consensus_5727#0      AATATTCCAACAGTCGTTGACGGGGATGGCCTTTTCCTTATAACCAATAACCTTAGTCTT 656
consensus_5727#1      AATATTCCAACAGTCGTTGACGGGGATGGCCTTTTCCTTATAACCAATAACCTTAGTCTT 377
                      ************************************************************

consensus_5727#0      GTTGAGGGTAACTTGCTTGCCATCCTAACACCAAATGTATACGAGTACAAACGTCTTGTC 716
consensus_5727#1      GTTGAGGGTAACTTGCTTGCCATCCTAACACCAAAT------------------------ 413
                      ************************************                        

consensus_5727#0      CAGAAGGTTCTTAACTGTGAAGTAAATGAGGAAAACGCTTCTGAACAACTTACTGCACTA 776
consensus_5727#1      ------------------------------------------------------------
                                                                                  

consensus_5727#0      TGCCAAAAAAATCGGTGGCATAACCATCATGCGGAAAGGAAAAGCAGATATAATCAGTGA 836
consensus_5727#1      ------------------------------------------------------------
                                                                                  

consensus_5727#0      TGGCAAAACTGTAACACAAGTAAGTACCTTTGGTTCCCCAAGGAGATGTGGTGGTCAAGG 896
consensus_5727#1      ------------------------------------------------------------
                                                                                  

consensus_5727#0      TGACATTCTTTCAGGAAGTGTTGCAGTATTTGCATCATGGGCACGTCACTTTCTCCTGAC 956
consensus_5727#1      ------------------------------------------------------------
                                                                                  

consensus_5727#0      GAATGAGTACCCTACAGAGAAGAGCGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTC 1016
consensus_5727#1      ------------------------------------------------------------
                                                                                  

consensus_5727#0      TCTACTACTTAGGAAAGCTGCATCACATGCTTTTGAGAAGAACAAGAGATCAACTGTCAC 1076
consensus_5727#1      ------------------------------------------------------------
                                                                                  

consensus_5727#0      CACTGACATCATTGAGTTACTGGGCAAAAGCTTAGAAGATATATGCCCTGCTGGTCATTA 1136
consensus_5727#1      ------------------------------------------------------------
                                                                                  

consensus_5727#0      GTTTAGATCTTTACCATCATTGGTGGTACGGCGCCTTAGCACCTGTAATAATGGTAATCC 1196
consensus_5727#1      ------------------------------------------------------------
                                                                                  

consensus_5727#0      ATATGTTCGGATACCAGTCTCTCCCTGCTTAATGTACATGTTTCTTGACTGAAAAGATGG 1256
consensus_5727#1      ------------------------------------------------------------
                                                                                  

consensus_5727#0      TGTTACAATGCTTGGTTTTGTTTAGCCTCCGTTTTGCTCAGAAGAATTCTACAGAATGAA 1316
consensus_5727#1      ------------------------------------------------------------
                                                                                  

consensus_5727#0      TAATGAATTGCCCCATAAATGGGGCT 1342
consensus_5727#1      --------------------------