cluster # 5728

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Oryza sativa
cluster # 5728 cluster # 5728 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5728#0 length = 547 sequences # 2

consensus_5728#1 length = 429 sequences # 1

consensusID : consensus_5728#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 547
fasta sequence

                              [GCCTCCACCACGCCGCCGCAGCAGCAGCACACCGCCAATGCCGCCGGCGGCTACGCCGGGTACGCCGCCCCGGGAGCCGGCCCCGGCGGCATGATGATGATGATGGGGCAGCCCATGTACGGCTCGCCGCCACCGCCGCCACAGCAGCAGCAGCAGCAACACCACCACATGGCAATGGGAGGAAGAGGCGGCTTCGGTCATCATCCCGGCGGCGGCGGCGGCGGGTCGTCGTCGTCGTCGGGGCACGGTCGGCAAAACAGGGGCGCTTGACATCGCTCCGAGACGAGTAGCATGCACCATGGTACATATATACAGTAATCAGCAGCTGTTCATTTTTCTATGATTACTAGTTGACTTAAGCTTGCAAATTTGCTAATCTGAGCTCCTGAGTTTTTTTTTTTGGTCAGCAATTTCAAGATGGTCAGAAGCTAAATTTGTCTATTTGTTACTGATAAATTATTTGTTCTCTCCGTTTAATCGTCATGAAATGTTTTGGGAAACATGAACTTTTCATGCCCCTTTTTTAATATAGATTAAGAATCCAGCC]

[+] EMBL AK060225             [GCCTCCACCACGCCGCCGCAGCAGCAGCACACCGCCAATGCCGCCGGCGGCTACGCCGGGTACGCCGCCCCGGGAGCCGGCCCCGGCGGCATGATGATGATGATGGGGCAGCCCATGTACGGCTCGCCGCCACCGCCGCCACAGCAGCAGCAGCAGCAACACCACCACATGGCAATGGGAGGAAGAGGCGGCTTCGGTCATCATCCCGGCGGCGGCGGCGGCGGGTCGTCGTCGTCGTCGGGGCACGGTCGGCAAAACAGGGGCGCTTGACATCGCTCCGAGACGAGTAGCATGCACCATGGTACATATATACAGTAATCAGCAGCTGTTCATTTTTCTATGATTACTAGTTGACTTAAGCTTGCAAATTTGCTAATCTGAGCTCCTGAGTTTTTTTTTTTGGTCAGCAATTTCAAGATGGTCAGAAGCTAAATTTGTCTATTTGTTACTGATAAATTATTTGTTCTCTCCGTTTAATCGTCATGAAATGTTTTGGGAAACATGAACTTTTCATGCCCCTTTTTTAATATAGATTAAGAATCCAGCC]
[+] EMBL CB680383             [GCCTCCACCACGCCGCCGCAGCAGCAGCACACCGCCAATGCCGCCGGCGGCTACGCCGGGTACGCCGCCCCGGGAGCCGGCCCCGGCGGCATGATGATGATGATGGGGCAGCCCATGTACGGCTCGCCGCCACCGCCGCCACAGCAGCAGCAGCAGCAACACCACCACATGGCAATGGGAGGAAGAGGCGGCTTCGGTCATCATCCCGGCGGCGGCGGCGGCGGGTCGTC                                                                                                                                                                                                                                                                                                                             ]




>consensus_5728#0
GCCTCCACCACGCCGCCGCAGCAGCAGCACACCGCCAATGCCGCCGGCGGCTACGCCGGG
TACGCCGCCCCGGGAGCCGGCCCCGGCGGCATGATGATGATGATGGGGCAGCCCATGTAC
GGCTCGCCGCCACCGCCGCCACAGCAGCAGCAGCAGCAACACCACCACATGGCAATGGGA
GGAAGAGGCGGCTTCGGTCATCATCCCGGCGGCGGCGGCGGCGGGTCGTCGTCGTCGTCG
GGGCACGGTCGGCAAAACAGGGGCGCTTGACATCGCTCCGAGACGAGTAGCATGCACCAT
GGTACATATATACAGTAATCAGCAGCTGTTCATTTTTCTATGATTACTAGTTGACTTAAG
CTTGCAAATTTGCTAATCTGAGCTCCTGAGTTTTTTTTTTTGGTCAGCAATTTCAAGATG
GTCAGAAGCTAAATTTGTCTATTTGTTACTGATAAATTATTTGTTCTCTCCGTTTAATCG
TCATGAAATGTTTTGGGAAACATGAACTTTTCATGCCCCTTTTTTAATATAGATTAAGAA
TCCAGCC

consensusID : consensus_5728#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 429
fasta sequence

                              [TATGGGGCAGCCCATGTTNCGGCTCTGTCCTCCATCCTTCTCTGCCACAGTCTAGTCATGCATCATGCGAACATCCAGCCACATGGCAATGGGAGGAAGAGTGCGGCATTCGGTCATCATCGCCGTGGCGTGCGTCGGCGTCGGGTCGTNGTCAGTCTCGGGGCACGGTCGGCANAAACAGGGGCGCTTGACATCGCTCCGAGACGAGTAGCATGCACCATGGTACATATATACAGTAATCAGCAGCTGNTCATTTTTCTATGAGTTACTAGTTGACTTAAGCTTGCAAATTTGCTAATCTGAGCTCCTGAGTTTTTTTTTTTGGTCAGCAATTTCAAGATGGTCAGAAGCTAAATTTGTCTATTTGTTACTGATAAATTATTTGTTCTCTCCGTTTAATCGTCATGAAATGTTTTGGGAAAAAAAAAA]

[+] EMBL BI806006             [TATGGGGCAGCCCATGTTNCGGCTCTGTCCTCCATCCTTCTCTGCCACAGTCTAGTCATGCATCATGCGAACATCCAGCCACATGGCAATGGGAGGAAGAGTGCGGCATTCGGTCATCATCGCCGTGGCGTGCGTCGGCGTCGGGTCGTNGTCAGTCTCGGGGCACGGTCGGCANAAACAGGGGCGCTTGACATCGCTCCGAGACGAGTAGCATGCACCATGGTACATATATACAGTAATCAGCAGCTGNTCATTTTTCTATGAGTTACTAGTTGACTTAAGCTTGCAAATTTGCTAATCTGAGCTCCTGAGTTTTTTTTTTTGGTCAGCAATTTCAAGATGGTCAGAAGCTAAATTTGTCTATTTGTTACTGATAAATTATTTGTTCTCTCCGTTTAATCGTCATGAAATGTTTTGGGAAAAAAAAAA]




>consensus_5728#1
TATGGGGCAGCCCATGTTNCGGCTCTGTCCTCCATCCTTCTCTGCCACAGTCTAGTCATG
CATCATGCGAACATCCAGCCACATGGCAATGGGAGGAAGAGTGCGGCATTCGGTCATCAT
CGCCGTGGCGTGCGTCGGCGTCGGGTCGTNGTCAGTCTCGGGGCACGGTCGGCANAAACA
GGGGCGCTTGACATCGCTCCGAGACGAGTAGCATGCACCATGGTACATATATACAGTAAT
CAGCAGCTGNTCATTTTTCTATGAGTTACTAGTTGACTTAAGCTTGCAAATTTGCTAATC
TGAGCTCCTGAGTTTTTTTTTTTGGTCAGCAATTTCAAGATGGTCAGAAGCTAAATTTGT
CTATTTGTTACTGATAAATTATTTGTTCTCTCCGTTTAATCGTCATGAAATGTTTTGGGA
AAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5728#0      GCCTCCACCACGCCGCCGCAGCAGCAGCACACCGCCAATGCCGCCGGCGGCTACGCCGGG 60
consensus_5728#1      ------------------------------------------------------------
                                                                                  

consensus_5728#0      TACGCCGCCCCGGGAGCCGGCCCCGGCGGCATGATGATGATGATGGGGCAGCCC-ATGTA 119
consensus_5728#1      -----------------------------TATGGGGCAGCCCATGTTNCGGCTCTGTCCT 31
                                                    ***  *  *   ***   * ** *  *   

consensus_5728#0      CGGCTCGCCGCCACCGCCGCCACAGCA-GCAGCA-GCAGCAACACCACCACATGGCAATG 177
consensus_5728#1      CCATCCTTCTCTGCCACAGTCTAGTCATGCATCATGCGAACATCCAGCCACATGGCAATG 91
                      *    *  * *  ** * * *    ** *** ** **    *  *  *************

consensus_5728#0      GGAGGAAGAG-GCGGC-TTCGGTCATCATCCCGGCGGCGG----CGGCGGCGGGTCGTCG 231
consensus_5728#1      GGAGGAAGAGTGCGGCATTCGGTCATCATCGCCGTGGCGTGCGTCGGCGTCGGGTCGTNG 151
                      ********** ***** ************* * * ****     ***** ******** *

consensus_5728#0      TCGTCGTCGGGGCACGGTCGGCAAAA-CAGGGGCGCTTGACATCGCTCCGAGACGAGTAG 290
consensus_5728#1      TCAGTCTCGGGGCACGGTCGGCANAAACAGGGGCGCTTGACATCGCTCCGAGACGAGTAG 211
                      **    ***************** ** *********************************

consensus_5728#0      CATGCACCATGGTACATATATACAGTAATCAGCAGCTGTTCATTTTTCTATGA-TTACTA 349
consensus_5728#1      CATGCACCATGGTACATATATACAGTAATCAGCAGCTGNTCATTTTTCTATGAGTTACTA 271
                      ************************************** ************** ******

consensus_5728#0      GTTGACTTAAGCTTGCAAATTTGCTAATCTGAGCTCCTGAGTTTTTTTTTTTGGTCAGCA 409
consensus_5728#1      GTTGACTTAAGCTTGCAAATTTGCTAATCTGAGCTCCTGAGTTTTTTTTTTTGGTCAGCA 331
                      ************************************************************

consensus_5728#0      ATTTCAAGATGGTCAGAAGCTAAATTTGTCTATTTGTTACTGATAAATTATTTGTTCTCT 469
consensus_5728#1      ATTTCAAGATGGTCAGAAGCTAAATTTGTCTATTTGTTACTGATAAATTATTTGTTCTCT 391
                      ************************************************************

consensus_5728#0      CCGTTTAATCGTCATGAAATGTTTTGGGAAACATGAACTTTTCATGCCCCTTTTTTAATA 529
consensus_5728#1      CCGTTTAATCGTCATGAAATGTTTTGGGAAAAAAAAAA---------------------- 429
                      ******************************* *  **                       

consensus_5728#0      TAGATTAAGAATCCAGCC 547
consensus_5728#1      ------------------