|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5731#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1828 fasta sequence
[GCACTTGCACTAGTTGAGTTCTCTTCTCCCTCCCGCACGGCACCATGATCTCACAGTGTTCCGGCCATGACGTCATGCAGTGGGAGTGGGACGTCCCACGGCGGCGTCGTTGCGCTCGCCGGCGGCGGCCGACACCCTGCCGGACGCCGGCTCAGCTGGTCGCCGGAATCATGAGGCTCCCTCCTCGCCGGCCTTTTCTTCAGGGGTTAGAGAAACGGTGACCGGGGTGGAGACGAACGACGACGGCGCCGAGAGAGGGGCGGAGCCGGCGGAGCGCGACAACGCCGCGCCGGCCGCCGCGGCAGCCATCTCCGGCGGCGATCAAGAAGCACAACCAGGTACAGCAGCCGTGGATGCGGCGCCGGGCCACGACAAATCCTTGCGGACCGCCGCCGCCACCGGAACGTCTCCTCCACGGCACGAACAACCAGGGGAGACCACGACGCGTGCGGATTCGGTAGACCAGCCGCGACATCCGCTGTGCGACTTGTCCGACCACCGCACCGACGTCTGCGACCTCGCCGGCGACATCCGCATGGACGCCAACGCCTCGGCGTTCGTCGTCGTCGTCGACCCGGCGGTCGGCGCGGACGGGCCGACGTACAAGGTCCGGCCGTACCCGCGGAAGGGCGACGCCACGAGCATGGGCCGCGTCACCGAGATCACGGTGCGCACGACCGCGGCGGTCGTGTTCTCGATCAGCGGGTACACGGGCAACCTGTTCCACGACTTCACCGACGTGATCGTCCCGCTGTACAACACCGCGGCGCGCTACTGCGGCGACGTGCAGCTCGTCGTGACGGACGGCAACGCGGCCACGCGGCGGTGGCTCGCCAGGTACGGCGCTGTCCTGCGCGGTCTGTCGCGCCACGTGCCGCTTGACCTCGCCGCCGAGGCCGCCGCCGGCGGCGGGGAGGTGCACTGCTTCGGGCACACCGTGGTCGGCCTGCGCGCGCACGGGGAGCTCATCATCGACCGCGAACGCAGCCCGGACGGTCTCGGGATGCCGGACTTCACGCGGTTCCTCCGCCGCGCGCTCTCGCTGCCCCGCGACGCGCCCACGCGCCCCGGCGGCGGCCACGGCGACGCCACGAAGCCCCAACCCCGCCCGCGCCTTCTCATCATCTCCCGCCGCGGAACACGGTTCTACTCAACACCGACGCCGTGGCGCGCGCCGCGGAGCAGGTCGGCTTCGAGGCCGTGGCAAGCGAGCTGGACATGGCCGGCGCGGACCACGACGACGTCGCGCGCGTGGCACGGCTCGTCAACTCGTTCGACGCGGTGGTGGGCGTGCACGGCGCCGGGCTGACGAACATGGTGTTCCTGCCACCCGGCGCCGCGGCGGTGCAGATCGTGCCGTGGGGCGGTCTCCGGTGGCTGGCGCGGGCGGACTTCGGCGAGCCGGCGGTGGCGATGGGGCTCAGGTACATCCAGTACGAGGTCGCCGCCGGCGAGAGCACGCTCAAGGAC-AAGTA-CCCGCGAGA-CCACGAGATATTCACCAA--CCCGACGGCGCTGCACAAGAAGGGGTTCACGTTCATGAGGCACACGTTTCTGAACGGCCAGGACATCATCGTCGACATCGACCGCTTCAAGCCGGTGTTGCTCCGCGCACTCAACAGCCTCGCGCGCTAACCTAGGGTCTGTTTGGCAGAGCTCTAGCGCAAGTCTAATGGATGAGTCTAGGGTCCGTTCTGCATTCGGCCTAAGCACGCAAACGTGTTCGGTCTGGCCCACATGCGTCTTGCCCATCTTGAGACACTGTGCTAGAAAAAATTGACACAGAATTTACATAAAAAACTTTTAATATAGGAACATTTTATATAAAAAA]
[+] EMBL AK109804 [GCACTTGCACTAGTTGAGTTCTCTTCTCCCTCCCGCACGGCACCATGATCTCACAGTGTTCCGGCCATGACGTCATGCAGTGGGAGTGGGACGTCCCACGGCGGCGTCGTTGCGCTCGCCGGCGGCGGCCGACACCCTGCCGGACGCCGGCTCAGCTGGTCGCCGGAATCATGAGGCTCCCTCCTCGCCGGCCTTTTCTTCAGGGGTTAGAGAAACGGTGACCGGGGTGGAGACGAACGACGACGGCGCCGAGAGAGGGGCGGAGCCGGCGGAGCGCGACAACGCCGCGCCGGCCGCCGCGGCAGCCATCTCCGGCGGCGATCAAGAAGCACAACCAGGTACAGCAGCCGTGGATGCGGCGCCGGGCCACGACAAATCCTTGCGGACCGCCGCCGCCACCGGAACGTCTCCTCCACGGCACGAACAACCAGGGGAGACCACGACGCGTGCGGATTCGGTAGACCAGCCGCGACATCCGCTGTGCGACTTGTCCGACCACCGCACCGACGTCTGCGACCTCGCCGGCGACATCCGCATGGACGCCAACGCCTCGGCGTTCGTCGTCGTCGTCGACCCGGCGGTCGGCGCGGACGGGCCGACGTACAAGGTCCGGCCGTACCCGCGGAAGGGCGACGCCACGAGCATGGGCCGCGTCACCGAGATCACGGTGCGCACGACCGCGGCGGTCGTGTTCTCGATCAGCGGGTACACGGGCAACCTGTTCCACGACTTCACCGACGTGATCGTCCCGCTGTACAACACCGCGGCGCGCTACTGCGGCGACGTGCAGCTCGTCGTGACGGACGGCAACGCGGCCACGCGGCGGTGGCTCGCCAGGTACGGCGCTGTCCTGCGCGGTCTGTCGCGCCACGTGCCGCTTGACCTCGCCGCCGAGGCCGCCGCCGGCGGCGGGGAGGTGCACTGCTTCGGGCACACCGTGGTCGGCCTGCGCGCGCACGGGGAGCTCATCATCGACCGCGAACGCAGCCCGGACGGTCTCGGGATGCCGGACTTCACGCGGTTCCTCCGCCGCGCGCTCTCGCTGCCCCGCGACGCGCCCACGCGCCCCGGCGGCGGCCACGGCGACGCCACGAAGCCCCAACCCCGCCCGCGCCTTCTCATCATCTCCCGCCGCGGAACACGGTTCTACTCAACACCGACGCCGTGGCGCGCGCCGCGGAGCAGGTCGGCTTCGAGGCCGTGGCAAGCGAGCTGGACATGGCCGGCGCGGACCACGACGACGTCGCGCGCGTGGCACGGCTCGTCAACTCGTTCGACGCGGTGGTGGGCGTGCACGGCGCCGGGCTGACGAACATGGTGTTCCTGCCACCCGGCGCCGCGGCGGTGCAGATCGTGCCGTGGGGCGGTCTCCGGTGGCTGGCGCGGGCGGACTTCGGCGAGCCGGCGGTGGCGATGGGGCTCAGGTACATCCAGTACGAGGTCGCCGCCGGCGAGAGCACGCTCAAGGAC AAGTA CCCGCGAGA CCACGAGATATTCACCAA CCCGACGGCGCTGCACAAGAAGGGGTTCACGTTCATGAGGCACACGTTTCTGAACGGCCAGGACATCATCGTCGACATCGACCGCTTCAAGCCGGTGTTGCTCCGCGCACTCAACAGCCTCGCGCGCTAACCTAGGGTCTGTTTGGCAGAGCTCTAGCGCAAGTCTAATGGATGAGTCTAGGGTCCGTTCTGCATTCGGCCTAAGCACGCAAACGTGTTCGGTCTGGCCCACATGCGTCTTGCCCATCTTGAGACACTGTGCTAGAAAAAATTGACACAGAATTTACATAAAAAACTTTTAATATAGGAA ]
[+] EMBL C97743 [ GGACAAAGTACCCCGCGAGACCCACGAGATATTCACCAAACCCCGAC GCGCTGCACAAGAAGGGGTTCACGTTCATGAGGCACACGTTTCTGAACGGCCAGGACATCATCGTCGACATCGACCGCTTCAAGCCGGTGGT TTCCGCGCACTCAACAGCCTCGCGCGCTAACCTAGGGTCTGTTTGGCAGAGCTCTAGCGCAAGTCTAATGGATGAGTCTAGGGTCCGTTCTGCATTCGGCCTAAGCACGCAAACGTGTTCGGTCTGGCCCACATGCGTCTTGCCCATCTTGAGACACTGTGCTAGAAAAAATTGACACAGAATTTACATAAAAAACTTTTAATATAGGAACATTTTATATAAAAAA]
consensusID : consensus_5731#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence
[CACGGGGGACGTTCAGGCGGCGGCTGCTGACCGTCACCGCCGGCTGCTTCCTCTTCTTCATCGTCTTCCTCCTCTCCTCCCGCCACGACGCCATTGTTCTCCTCGACACCCGTCTGGGAGTGGGACGTCCCACGGCGGCGTCGTTGCGCTCGCCGGCGGCGGCCGACACCCTGCCGGACGCCGGCTCAGCTGGTCGCCGGAATCATGAGGCTCCCTCCTCGCCGGCCTTTTCTTCAGGGGTTAGAGAAACGGTGACCGGGGTGGAGACGA]
[+] EMBL AU093337 [CACGGGGGACGTTCAGGCGGCGGCTGCTGACCGTCACCGCCGGCTGCTTCCTCTTCTTCATCGTCTTCCTCCTCTCCTCCCGCCACGACGCCATTGTTCTCCTCGACACCCGTCTGGGAGTGGGACGTCCCACGGCGGCGTCGTTGCGCTCGCCGGCGGCGGCCGACACCCTGCCGGACGCCGGCTCAGCTGGTCGCCGGAATCATGAGGCTCCCTCCTCGCCGGCCTTTTCTTCAGGGGTTAGAGAAACGGTGACCGGGGTGGAGACGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5731#0 ------------------------------GCACTTGCACTAGTTGAGTTCTCTTCTCCC 30
consensus_5731#1 CACGGGGGACGTTCAGGCGGCGGCTGCTGACCGTCACCGCCGGCTGCTTCCTCTTCTTCA 60
* * * * ** * ******* *
consensus_5731#0 TCCCGCACGGCACCATGATCT--CACAGTGTT-CCGGCCATGACGTCATGCAG-TGGGAG 86
consensus_5731#1 TCGTCTTCCTCCTCTCCTCCCGCCACGACGCCATTGTTCTCCTCGACACCCGTCTGGGAG 120
** * * * * *** * * * ** ** * ******
consensus_5731#0 TGGGACGTCCCACGGCGGCGTCGTTGCGCTCGCCGGCGGCGGCCGACACCCTGCCGGACG 146
consensus_5731#1 TGGGACGTCCCACGGCGGCGTCGTTGCGCTCGCCGGCGGCGGCCGACACCCTGCCGGACG 180
************************************************************
consensus_5731#0 CCGGCTCAGCTGGTCGCCGGAATCATGAGGCTCCCTCCTCGCCGGCCTTTTCTTCAGGGG 206
consensus_5731#1 CCGGCTCAGCTGGTCGCCGGAATCATGAGGCTCCCTCCTCGCCGGCCTTTTCTTCAGGGG 240
************************************************************
consensus_5731#0 TTAGAGAAACGGTGACCGGGGTGGAGACGAACGACGACGGCGCCGAGAGAGGGGCGGAGC 266
consensus_5731#1 TTAGAGAAACGGTGACCGGGGTGGAGACGA------------------------------ 270
******************************
consensus_5731#0 CGGCGGAGCGCGACAACGCCGCGCCGGCCGCCGCGGCAGCCATCTCCGGCGGCGATCAAG 326
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 AAGCACAACCAGGTACAGCAGCCGTGGATGCGGCGCCGGGCCACGACAAATCCTTGCGGA 386
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 CCGCCGCCGCCACCGGAACGTCTCCTCCACGGCACGAACAACCAGGGGAGACCACGACGC 446
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 GTGCGGATTCGGTAGACCAGCCGCGACATCCGCTGTGCGACTTGTCCGACCACCGCACCG 506
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 ACGTCTGCGACCTCGCCGGCGACATCCGCATGGACGCCAACGCCTCGGCGTTCGTCGTCG 566
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 TCGTCGACCCGGCGGTCGGCGCGGACGGGCCGACGTACAAGGTCCGGCCGTACCCGCGGA 626
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 AGGGCGACGCCACGAGCATGGGCCGCGTCACCGAGATCACGGTGCGCACGACCGCGGCGG 686
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 TCGTGTTCTCGATCAGCGGGTACACGGGCAACCTGTTCCACGACTTCACCGACGTGATCG 746
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 TCCCGCTGTACAACACCGCGGCGCGCTACTGCGGCGACGTGCAGCTCGTCGTGACGGACG 806
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 GCAACGCGGCCACGCGGCGGTGGCTCGCCAGGTACGGCGCTGTCCTGCGCGGTCTGTCGC 866
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 GCCACGTGCCGCTTGACCTCGCCGCCGAGGCCGCCGCCGGCGGCGGGGAGGTGCACTGCT 926
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 TCGGGCACACCGTGGTCGGCCTGCGCGCGCACGGGGAGCTCATCATCGACCGCGAACGCA 986
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 GCCCGGACGGTCTCGGGATGCCGGACTTCACGCGGTTCCTCCGCCGCGCGCTCTCGCTGC 1046
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 CCCGCGACGCGCCCACGCGCCCCGGCGGCGGCCACGGCGACGCCACGAAGCCCCAACCCC 1106
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 GCCCGCGCCTTCTCATCATCTCCCGCCGCGGAACACGGTTCTACTCAACACCGACGCCGT 1166
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 GGCGCGCGCCGCGGAGCAGGTCGGCTTCGAGGCCGTGGCAAGCGAGCTGGACATGGCCGG 1226
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 CGCGGACCACGACGACGTCGCGCGCGTGGCACGGCTCGTCAACTCGTTCGACGCGGTGGT 1286
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 GGGCGTGCACGGCGCCGGGCTGACGAACATGGTGTTCCTGCCACCCGGCGCCGCGGCGGT 1346
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 GCAGATCGTGCCGTGGGGCGGTCTCCGGTGGCTGGCGCGGGCGGACTTCGGCGAGCCGGC 1406
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 GGTGGCGATGGGGCTCAGGTACATCCAGTACGAGGTCGCCGCCGGCGAGAGCACGCTCAA 1466
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 GGACAAGTACCCGCGAGACCACGAGATATTCACCAACCCGACGGCGCTGCACAAGAAGGG 1526
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 GTTCACGTTCATGAGGCACACGTTTCTGAACGGCCAGGACATCATCGTCGACATCGACCG 1586
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 CTTCAAGCCGGTGTTGCTCCGCGCACTCAACAGCCTCGCGCGCTAACCTAGGGTCTGTTT 1646
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 GGCAGAGCTCTAGCGCAAGTCTAATGGATGAGTCTAGGGTCCGTTCTGCATTCGGCCTAA 1706
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 GCACGCAAACGTGTTCGGTCTGGCCCACATGCGTCTTGCCCATCTTGAGACACTGTGCTA 1766
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 GAAAAAATTGACACAGAATTTACATAAAAAACTTTTAATATAGGAACATTTTATATAAAA 1826
consensus_5731#1 ------------------------------------------------------------
consensus_5731#0 AA 1828
consensus_5731#1 --
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||