These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5734#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 871 fasta sequence [ATTTGATGAAAAGTTTGTCAGAATAGATACAGAAAGACTATGTGAGCTGACATCGGCGGCTGATAGTCTCCAATTAAAGCCATTGGTTGATCTTACCAGTCGAGCACTTGCTCGAATAATTGAAGGAAAGACACCTGAGGAAATTCGTGATATTTTCCATTTGCCAGATGACTTAACAGAGGAAGAGAAATTGGAACCCCTGAAAAATATAAATGATGATCCCAGGATCCGTTTGTTGAATCGATTATATGCACAGAAGCGGAAAGAACTACAGGAGCGCCAGAAACTGAAGGATGTTCAAGTACAAGAAGAGCAAAAAGATGAGCGGTCACTGGATGAGATACTATGTTTTATAAATGGGGATGGAGGTTCTGGAGGTGGGAAAGCTTCTAAGAATAAGAAAAAGAACAAGAGAAGAAAGGACCATTCTAAGAACCCCCCAAAAGCTAATCCTGAACCTGTAAACAAGGAGGAAGCTACTCGTGGAGTTCCATTCAATGCGGGTACTGGTAATATTTCTAGAACACCTTGCCAAAGCTCAGATGTGCAAGATGATGTTGAGTACCCCTTTGAAGATGCTGACCTTGATGATGGACTTGATCCTGCAATGCAGGAAGAGCTTGACAGAGAAGTGGAGGACTTCGCAAGGAGGNTGAATTCTGNTTGGCCTGAAAGAATGCATTTAGGCCAAGAAGAAGGATTGAGTCACATATGATTGGTGGCAATGGNTCTCTGCAAGATTTTCTGGTATGCAGGGTTCAATCACAGGTGAGGAGGTTAGCGCCAGGATCAACAAGCAGAAGCACAGGAAATTTGTGCCATGCAGCTTGGAAANAGCTAGAGACACCGACAGGGNCACCTGNTACTTGAG] [+] EMBL CA763928 [ATTTGATGAAAAGTTTGTCAGAATAGATACAGAAAGACTATGTGAGCTGACATCGGCGGCTGATAGTCTCCAATTAAAGCCATTGGTTGATCTTACCAGTCGAGCACTTGCTCGAATAATTGAAGGAAAGACACCTGAGGAAATTCGTGATATTTTCCATTTGCCAGATGACTTAACAGAGGAAGAGAAATTGGAACCCCTGAAAAATATAAATGATGATCCCAGGATCCGTTTGTTGAATCGATTATATGCACAGAAGCGGAAAGAACTACAGGAGCGCCAGAAACTGAAGGATGTTCAAGTACAAGAAGAGCAAAAAGATGAGCGGTCACTGGATGAGATACTATGTTTTATAAATGGGGATGGAGGTTCTGGAGGTGGGAAAGCTTCTAAGAATAAGAAAAAGAACAAGAGAAGAAAGGACCATTCTAAGAACCCCCCAAAAGCTAATCCTGAACCTGTAAACAAGGAGGAAGCTACTCGTGGAGTTCCATTCAATGCGGGTACTGGTAATATTTCTAGAACACCTTGCCAAAGCTCAGATGTGCAAGATGATGTTGAGTACCCCTTTGAAGATGCTGACCTTGATGATGGACTTGATCCTGCAATGCAGGAAGAGCTTGACAGAGAAGTGGAGGACTTCGCAAGGAGGNTGAATTCTGNTTGGCCTGAAAGAATGCATTTAGGCCAAGAAGAAGGATTGAGTCACATATGATTGGTGGCAATGGNTCTCTGCAAGATTTTCTGGTATGCAGGGTTCAATCACAGGTGAGGAGGTTAGCGCCAGGATCAACAAGCAGAAGCACAGGAAATTTGTGCCATGCAGCTTGGAAANAGCTAGAGACACCGACAGGGNCACCTGNTACTTGAG] consensusID : consensus_5734#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 384 fasta sequence [AGTACCCCTTTGAAGATGCTGACCTTGATGATGGACTTGATCCTGCAATGCAGAAGCAGCTTGACAGAGAAGTGGAGGACTTCGCAAGGAGGTTGAATTCTGTTTGGCCTGAAAGAATGCATTTAGGCCAAGAAAGAAGGATTGAGTCACATATGATTGGTGGCAATGGTTCTCTGCAAAGATTTTCTGGGTTCAATCACAGGTGAGAAGGTTAAGCGCCAGGATCAACAAGCAGAAGCACAGGAAATTTGTGCACATGCAGCTTGGAAGAGAGCTAGAGACCACCGAACAGGGCCACCTGTTTACTTGAGTAAGTGCTCGCCGAAAAAGCCTCGGCGCCCAGCTTNCAGACGATGTAGATTTGTTTGCCTTGGCCATTTTCGG] [+] EMBL AU063714 [AGTACCCCTTTGAAGATGCTGACCTTGATGATGGACTTGATCCTGCAATGCAGAAGCAGCTTGACAGAGAAGTGGAGGACTTCGCAAGGAGGTTGAATTCTGTTTGGCCTGAAAGAATGCATTTAGGCCAAGAAAGAAGGATTGAGTCACATATGATTGGTGGCAATGGTTCTCTGCAAAGATTTTCTGGGTTCAATCACAGGTGAGAAGGTTAAGCGCCAGGATCAACAAGCAGAAGCACAGGAAATTTGTGCACATGCAGCTTGGAAGAGAGCTAGAGACCACCGAACAGGGCCACCTGTTTACTTGAGTAAGTGCTCGCCGAAAAAGCCTCGGCGCCCAGCTTNCAGACGATGTAGATTTGTTTGCCTTGGCCATTTTCGG] [+] EMBL AU063642 [AGTACCCCTTTGAAGATNCTGACCTTGATGATGGACTTGATCCTGCAATNCAGAAG AGCTTGACAGAGAAGTGGAGGACTTCGCAAGGAGGTTGAATTCTGTTTGGCCTGAAAGAATGCATTTAGGCCAAGAAAGAAGGATTGANTCACATATGATTGGTGGCAATGGTTCTNTGCAAAGATTTTNTGGGTTCAATCACAGGTGAGAAGGTTAAGCGCCAGGNTCAACAAGCAGAAGCACAGGAAATTTNTGCACATGCAGCTTGGAAGAGAGCTAGAGACCACCGAACAGGGNCACCTGTTTt ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5734#0 ATTTGATGAAAAGTTTGTCAGAATAGATACAGAAAGACTATGTGAGCTGACATCGGCGGC 60 consensus_5734#1 ------------------------------------------------------------ consensus_5734#0 TGATAGTCTCCAATTAAAGCCATTGGTTGATCTTACCAGTCGAGCACTTGCTCGAATAAT 120 consensus_5734#1 ------------------------------------------------------------ consensus_5734#0 TGAAGGAAAGACACCTGAGGAAATTCGTGATATTTTCCATTTGCCAGATGACTTAACAGA 180 consensus_5734#1 ------------------------------------------------------------ consensus_5734#0 GGAAGAGAAATTGGAACCCCTGAAAAATATAAATGATGATCCCAGGATCCGTTTGTTGAA 240 consensus_5734#1 ------------------------------------------------------------ consensus_5734#0 TCGATTATATGCACAGAAGCGGAAAGAACTACAGGAGCGCCAGAAACTGAAGGATGTTCA 300 consensus_5734#1 ------------------------------------------------------------ consensus_5734#0 AGTACAAGAAGAGCAAAAAGATGAGCGGTCACTGGATGAGATACTATGTTTTATAAATGG 360 consensus_5734#1 ------------------------------------------------------------ consensus_5734#0 GGATGGAGGTTCTGGAGGTGGGAAAGCTTCTAAGAATAAGAAAAAGAACAAGAGAAGAAA 420 consensus_5734#1 ------------------------------------------------------------ consensus_5734#0 GGACCATTCTAAGAACCCCCCAAAAGCTAATCCTGAACCTGTAAACAAGGAGGAAGCTAC 480 consensus_5734#1 ------------------------------------------------------------ consensus_5734#0 TCGTGGAGTTCCATTCAATGCGGGTACTGGTAATATTTCTAGAACACCTTGCCAAAGCTC 540 consensus_5734#1 ------------------------------------------------------------ consensus_5734#0 AGATGTGCAAGATGATGTTGAGTACCCCTTTGAAGATGCTGACCTTGATGATGGACTTGA 600 consensus_5734#1 --------------------AGTACCCCTTTGAAGATGCTGACCTTGATGATGGACTTGA 40 **************************************** consensus_5734#0 TCCTGCAATGCAGGAAGAGCTTGACAGAGAAGTGGAGGACTTCGCAAGGAGGNTGAATTC 660 consensus_5734#1 TCCTGCAATGCAGAAGCAGCTTGACAGAGAAGTGGAGGACTTCGCAAGGAGGTTGAATTC 100 ************* * *********************************** ******* consensus_5734#0 TGNTTGGCCTGAAAGAATGCATTTAGGCCAAGAA-GAAGGATTGAGTCACATATGATTGG 719 consensus_5734#1 TGTTTGGCCTGAAAGAATGCATTTAGGCCAAGAAAGAAGGATTGAGTCACATATGATTGG 160 ** ******************************* ************************* consensus_5734#0 TGGCAATGGNTCTCTGCAA-GATTTTCTGGTATGCAGGGTTCAATCACAGGTGAGGAGGT 778 consensus_5734#1 TGGCAATGGTTCTCTGCAAAGATTTTCTGG--------GTTCAATCACAGGTGAGAAGGT 212 ********* ********* ********** ***************** **** consensus_5734#0 TA-GCGCCAGGATCAACAAGCAGAAGCACAGGAAATTTGTGC-CATGCAGCTTGGAA-AN 835 consensus_5734#1 TAAGCGCCAGGATCAACAAGCAGAAGCACAGGAAATTTGTGCACATGCAGCTTGGAAGAG 272 ** *************************************** ************** * consensus_5734#0 AGCTAGAGAC-ACCGA-CAGGGNCACCTGNT-ACTTGAG--------------------- 871 consensus_5734#1 AGCTAGAGACCACCGAACAGGGCCACCTGTTTACTTGAGTAAGTGCTCGCCGAAAAAGCC 332 ********** ***** ***** ****** * ******* consensus_5734#0 ---------------------------------------------------- consensus_5734#1 TCGGCGCCCAGCTTNCAGACGATGTAGATTTGTTTGCCTTGGCCATTTTCGG 384 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||