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Oryza sativa
cluster # 5739 cluster # 5739       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5739#0 length = 812 sequences # 2  
consensus_5739#1 length = 682 sequences # 1  

consensusID : consensus_5739#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 812
fasta sequence
                              [ACAGCGCAAGAAAATGGCGGGTGCCATGACCATGAGTCGCCGCCGTCTCTCCCACGCGCTCCTCCTCGTGCTCGCGATCCTCCCCAACCTGGCCGCTCTCGCCGTCGCCGCCGGCGGCGGCAGCGGAGGCGGTGGCTTCTTCCCGCACCGGTCCCTCCTCCAGTCCTCCAGCTGCCAGCCGAGCGGCGCCATCACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCCGAGTGCTGCCAGGACGGCGTCCAGTACATGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGGCACCGGCACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCGGCGCGCCGTCCTGCACGGGGAGGTTCTACGACGACGGCCAGCTGGTGGTGGCGCTGTCCACGGGGTGGTTCGACGGGAGGAGCCGGTGCGAGAAGGACGTCGTCATCCGGGCGAGCGGCGGCGCGTCCGTGACGGCCATGGTCGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACAGCGACCACAACTTCGAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGTGTGGGACGCGCTGGGGCTCAACAAGGACGACGGCGAGGCCCAGATCACCTGGTCCGATGCTTGACGACGACGACGACACACGTAGTGACGTAGACGCCATGTAACACGGCCGTATAATTTCCCATTAATAAGCTTATATATATTCCCTAACAGTGATGTATCGTAATTTTTCTTTTGTAAAATTAAACACCTCTTGATATATCAAGTAATAAAGAGGGAAT]

[+] EMBL AK102387             [ACAGCGCAAGAAAATGGCGGGTGCCATGACCATGAGTCGCCGCCGTCTCTCCCACGCGCTCCTCCTCGTGCTCGCGATCCTCCCCAACCTGGCCGCTCTCGCCGTCGCCGCCGGCGGCGGCAGCGGAGGCGGTGGCTTCTTCCCGCACCGGTCCCTCCTCCAGTCCTCCAGCTGCCAGCCGAGCGGCGCCATCACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCCGAGTGCTGCCAGGACGGCGTCCAGTACATGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGGCACCGGCACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCGGCGCGCCGTCCTGCACGGGGAGGTTCTACGACGACGGCCAGCTGGTGGTGGCGCTGTCCACGGGGTGGTTCGACGGGAGGAGCCGGTGCGAGAAGGACGTCGTCATCCGGGCGAGCGGCGGCGCGTCCGTGACGGCCATGGTCGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACAGCGACCACAACTTCGAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGTGTGGGACGCGCTGGGGCTCAACAAGGACGACGGCGAGGCCCAGATCACCTGGTCCGATGCTTGACGACGACGACGACACACGTAGTGACGTAGACGCCATGTAACACGGCCGTATAATTTCCCATTAATAAGCTTATATATATTCCCTAACAGTGATGTATCGTAATTTTTCTTTTGTAAAATTAAACACCTCTTGATATATCAAGTAATAAAGAGGGAAT]
[+] EMBL CB628880             [                      GCCATGACCATGAGTCGCCGCCGTCTCTCCCACGCGCTCCTCCTCGTGCTCGCGATCCTCCCCAACCTGGCCGCTCTCGCCGTCGCCGCCGGCGGCGGCAGCGGAGGCGGTGGCTTCTTCCCGCACCGGTCCCTCCTCCAGTCCTCCAGCTGCCAGCCGAGCGGCGCCATCACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCCGAGTGCTGCCAGGACGGCGTCCAGTACACGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGGCACCGGCACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCAGCGCACCGTCGTGCACGGGGAGGTTCTACCACGACGGCCAACTGGTGGTGGCGCTGTCCACGGGGTGGTTCGACGGGAGGAGCCCGTGCAAAAAGGACGTCCTAATTGGGGGGAGCGGTAGAGCGTCCGTGAGGGCGATGGTCCTCTACCACTGCCACTCCCATCGGAGATGCTACAGAGACCACAAATGCCAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGGGTGGGACGCGC                                                                                                                                                                                                                  ]


>consensus_5739#0 ACAGCGCAAGAAAATGGCGGGTGCCATGACCATGAGTCGCCGCCGTCTCTCCCACGCGCT CCTCCTCGTGCTCGCGATCCTCCCCAACCTGGCCGCTCTCGCCGTCGCCGCCGGCGGCGG CAGCGGAGGCGGTGGCTTCTTCCCGCACCGGTCCCTCCTCCAGTCCTCCAGCTGCCAGCC GAGCGGCGCCATCACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCCGAGTGCTG CCAGGACGGCGTCCAGTACATGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGGCAC CGGCACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCGGCGC GCCGTCCTGCACGGGGAGGTTCTACGACGACGGCCAGCTGGTGGTGGCGCTGTCCACGGG GTGGTTCGACGGGAGGAGCCGGTGCGAGAAGGACGTCGTCATCCGGGCGAGCGGCGGCGC GTCCGTGACGGCCATGGTCGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACAGCGACCA CAACTTCGAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGTGTGGGACGC GCTGGGGCTCAACAAGGACGACGGCGAGGCCCAGATCACCTGGTCCGATGCTTGACGACG ACGACGACACACGTAGTGACGTAGACGCCATGTAACACGGCCGTATAATTTCCCATTAAT AAGCTTATATATATTCCCTAACAGTGATGTATCGTAATTTTTCTTTTGTAAAATTAAACA CCTCTTGATATATCAAGTAATAAAGAGGGAAT



consensusID : consensus_5739#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 682
fasta sequence
                              [GCCGAGCGGCGCCATCACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCCGAGTGCTGCCAGGACGGCGTCCAGTACACGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGGCACCGGCACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCAGCGCGCCGTCCTGCACGGGGAGGTTCTACGACGACGGCCAGCTGGTGGTGGCGCTGTCCACGGGGTGGTTCGACGGGAGGAGCCGGTGCGAGAAGGACGTCGTCATCCGGGCGAGCGGCGGCGCGTCCGTGACGGCCATGGTCGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACAGCGACCACAACTTCGAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGTGTGGGACGCGCTGGGGCTCAACAAGGACGACGGCGAGGCCCAGATCACCTGGTCCGATGCTTGACGACGACGACGACACACGTAGTGACGTAGACGCCATGTAACACGGACGTATAATTTCCCATTAATAAGCTTATATATATTCCCTAACAGTGATTTTACAGTCTCTGATGAGATATCGAGATGTATCGTAATTTTTCTTTTGTAAAATTAAGCATCTCTTGATATATCAAGCAATAAAGAGGGAATACTAAATTATACTAAGAGA]

[-] EMBL CB628881             [GCCGAGCGGCGCCATCACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCCGAGTGCTGCCAGGACGGCGTCCAGTACACGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGGCACCGGCACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCAGCGCGCCGTCCTGCACGGGGAGGTTCTACGACGACGGCCAGCTGGTGGTGGCGCTGTCCACGGGGTGGTTCGACGGGAGGAGCCGGTGCGAGAAGGACGTCGTCATCCGGGCGAGCGGCGGCGCGTCCGTGACGGCCATGGTCGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACAGCGACCACAACTTCGAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGTGTGGGACGCGCTGGGGCTCAACAAGGACGACGGCGAGGCCCAGATCACCTGGTCCGATGCTTGACGACGACGACGACACACGTAGTGACGTAGACGCCATGTAACACGGACGTATAATTTCCCATTAATAAGCTTATATATATTCCCTAACAGTGATTTTACAGTCTCTGATGAGATATCGAGATGTATCGTAATTTTTCTTTTGTAAAATTAAGCATCTCTTGATATATCAAGCAATAAAGAGGGAATACTAAATTATACTAAGAGA]


>consensus_5739#1 GCCGAGCGGCGCCATCACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCCGAGTG CTGCCAGGACGGCGTCCAGTACACGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGG CACCGGCACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCAG CGCGCCGTCCTGCACGGGGAGGTTCTACGACGACGGCCAGCTGGTGGTGGCGCTGTCCAC GGGGTGGTTCGACGGGAGGAGCCGGTGCGAGAAGGACGTCGTCATCCGGGCGAGCGGCGG CGCGTCCGTGACGGCCATGGTCGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACAGCGA CCACAACTTCGAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGTGTGGGA CGCGCTGGGGCTCAACAAGGACGACGGCGAGGCCCAGATCACCTGGTCCGATGCTTGACG ACGACGACGACACACGTAGTGACGTAGACGCCATGTAACACGGACGTATAATTTCCCATT AATAAGCTTATATATATTCCCTAACAGTGATTTTACAGTCTCTGATGAGATATCGAGATG TATCGTAATTTTTCTTTTGTAAAATTAAGCATCTCTTGATATATCAAGCAATAAAGAGGG AATACTAAATTATACTAAGAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5739#0      ACAGCGCAAGAAAATGGCGGGTGCCATGACCATGAGTCGCCGCCGTCTCTCCCACGCGCT 60
consensus_5739#1      ------------------------------------------------------------
                                                                                  

consensus_5739#0      CCTCCTCGTGCTCGCGATCCTCCCCAACCTGGCCGCTCTCGCCGTCGCCGCCGGCGGCGG 120
consensus_5739#1      ------------------------------------------------------------
                                                                                  

consensus_5739#0      CAGCGGAGGCGGTGGCTTCTTCCCGCACCGGTCCCTCCTCCAGTCCTCCAGCTGCCAGCC 180
consensus_5739#1      ---------------------------------------------------------GCC 3
                                                                               ***

consensus_5739#0      GAGCGGCGCCATCACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCCGAGTGCTG 240
consensus_5739#1      GAGCGGCGCCATCACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCCGAGTGCTG 63
                      ************************************************************

consensus_5739#0      CCAGGACGGCGTCCAGTACATGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGGCAC 300
consensus_5739#1      CCAGGACGGCGTCCAGTACACGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGGCAC 123
                      ******************** ***************************************

consensus_5739#0      CGGCACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCGGCGC 360
consensus_5739#1      CGGCACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCAGCGC 183
                      ******************************************************* ****

consensus_5739#0      GCCGTCCTGCACGGGGAGGTTCTACGACGACGGCCAGCTGGTGGTGGCGCTGTCCACGGG 420
consensus_5739#1      GCCGTCCTGCACGGGGAGGTTCTACGACGACGGCCAGCTGGTGGTGGCGCTGTCCACGGG 243
                      ************************************************************

consensus_5739#0      GTGGTTCGACGGGAGGAGCCGGTGCGAGAAGGACGTCGTCATCCGGGCGAGCGGCGGCGC 480
consensus_5739#1      GTGGTTCGACGGGAGGAGCCGGTGCGAGAAGGACGTCGTCATCCGGGCGAGCGGCGGCGC 303
                      ************************************************************

consensus_5739#0      GTCCGTGACGGCCATGGTCGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACAGCGACCA 540
consensus_5739#1      GTCCGTGACGGCCATGGTCGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACAGCGACCA 363
                      ************************************************************

consensus_5739#0      CAACTTCGAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGTGTGGGACGC 600
consensus_5739#1      CAACTTCGAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGTGTGGGACGC 423
                      ************************************************************

consensus_5739#0      GCTGGGGCTCAACAAGGACGACGGCGAGGCCCAGATCACCTGGTCCGATGCTTGACGACG 660
consensus_5739#1      GCTGGGGCTCAACAAGGACGACGGCGAGGCCCAGATCACCTGGTCCGATGCTTGACGACG 483
                      ************************************************************

consensus_5739#0      ACGACGACACACGTAGTGACGTAGACGCCATGTAACACGGCCGTATAATTTCCCATTAAT 720
consensus_5739#1      ACGACGACACACGTAGTGACGTAGACGCCATGTAACACGGACGTATAATTTCCCATTAAT 543
                      **************************************** *******************

consensus_5739#0      AAGCTTATATATATTCCCTAACAGTGAT----------------------------GTAT 752
consensus_5739#1      AAGCTTATATATATTCCCTAACAGTGATTTTACAGTCTCTGATGAGATATCGAGATGTAT 603
                      ****************************                            ****

consensus_5739#0      CGTAATTTTTCTTTTGTAAAATTAAACACCTCTTGATATATCAAGTAATAAAGAGGGAAT 812
consensus_5739#1      CGTAATTTTTCTTTTGTAAAATTAAGCATCTCTTGATATATCAAGCAATAAAGAGGGAAT 663
                      ************************* ** **************** **************

consensus_5739#0      -------------------
consensus_5739#1      ACTAAATTATACTAAGAGA 682
                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)