Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5740 cluster # 5740       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5740#0 length = 648 sequences # 3  

consensusID : consensus_5740#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 648
fasta sequence
                              [ATCCGCGGGCCGAGCTGCCACCGCGGCGTGGGCGCGGCCGGGTCGAACACGAGCGGGCGGGAGAGCGCAGGGTGCAGGGACTGCGTGGAGCCCGAGACGAGGACGAGGCGGCCGGCGGCGGCGACGGACTGCAGCGGGAGGCGGCGANCGAGGAAGGAGGGGTGCCAGANCATGGGCGGCGGCGACGGCATTGGCGGCGAGGGAAGCGCGT-CCCAGCGT-CCAGCCAAGGGGTCGTAGGCGGCAAACGAGACGCCGGCGTCGGCATCCGCGTCGTCGANGAGCGCGTACAGAGACAAAAACGGCGGGGAACGACGGCGCGTACATGAGCCGTCTCCACNGCCGGCAAACGGCGTGCANGAGTCGC-GGCGGGAGCGGCGAGAGGCAG-ACTGCGCCAGGTGGTCCGGCAACCCGGGGAGCAGCGGCTGCGGCGGCGTGGTGGTCGTCATCGTC-GTCGGCGGCGGCGGCGCCACCGCCTCCTCTTCCATGCCGCCGTCCATGGCAGCAGCAGCTGGTAGCGAAGGGCGGAGCCGCTTGTGATTCTGGCCGGAGGAGGAAGTGATCGCCGTCGTGGTCGTCGTCGGCGGCGGCGGCTTGCAGTAGGGGCGCTTAGCCGCGGCCATCATGGTCGCAATACTACTATATNAGAGG]

[+] EMBL AU070674             [ATCCGCGGGCCGAGCTGCCACCGCGGCGTGGGCGCGGCCGGGTCGAACACGAGCGGGCGGGAGAGCGCAGGGTGCAGGGACTGCGTGGAGCCCGAGACGAGGACGAGGCGGCCGGCGGCGGCGACGGACTGCAGCGGGAGGCGGCGANCGAGGAAGGAGGGGTGCCAGANCATGGGCGGCGGCGACGGCATTGGCGGCGAGGGAAGCGCGT CCCAGCGT CCAGCCAAGGGGTCGTAGGCGGCAAACGAGACGCCGGCGTCGGCATCCGCGTCGTCGANGAGCGCGTACAGAGACAAAAACGGCGGGGAACGACGGCGCGTACATGAGCCGTCTCCACNGCCGGCAAACGGCGTGCANGAGTCGCGGGCGGGANCGGCGATAGGCAGAACTGCGCCAGNTGGT                                                                                                                                                                                                                                                         ]
[+] EMBL AU197415             [                                                                                 TGCGTGNAGCCCGAGACGAGGACGANGCGGCCGGCGGCGGCGACGGACTGCAGCGGGAGGCGGCGAGCGAGGAAGGAGGNGTGCCAGAGCATGGGCGGCGGCGACGGCATTGGCGGCGAGGGAAGCGCGTCCCCAGCGTCCCAGCCAAGGGGTCGTAGGCGGCAAACGAGACGCCGGCGTCGGCATCCGCGTCGTCGAGGAGCGCGTACAGAGACAAAAACGGC GGGAACGACGGCGCGTACATGAGCCGTCTCCACGGCCGGCAAACGGCGTGCAGGAGTCGC GGCGGGAGCGGCGAGAGGCAG ANTGCGCCAGGTGGTCCGGCAACCCGGGGAGCAGCGGCTGCGGCGGCGTGGTGGTCGTCATCGTC GTCGGCGGCGGCGGCGCCACCGCCTCCTCTTCCATGCCGCCGTCCATGGCAGCAGCAGCTGGTAGCGAAGGGCGGAGCCGCTTGTGATTCTGGCCGGAGGAGGAAGTGATCGCCGTCGTGGTCGTCGTCGGCGGCGGCGGCTTGCAGTAGGGGCGCTTAGCCGCGGCCATCATGGTC                     ]
[-] EMBL OSC4641              [                                                                                                                                                                                                                                                                                                                                                                          TCGC GGCGGGAGCGGCCAGAGGNAG ACT CGCCAGGTGGTCCGGCAACCCGGGGAGCAGCGGCTGCGGCGGCGTGGTGGTCGTCATCGTCGGTC GCGGC GCGGCGCCACCGCCTCCTCTTCCATGCCGCCGTCCATGGCAGCAGCAGCTGGTAGCGAAGGGCGGAGCCGCTTGTGATTCTGGCCGGAGGAGGAAGTGATCGCCGTCGTGGTCGTCGTCGNCGGCGNCGGCTTGCAGTAGGGGCGCTTAGCCGCGGCCATCATGGTNGCAATACTACTATATNAGAGG]


>consensus_5740#0 ATCCGCGGGCCGAGCTGCCACCGCGGCGTGGGCGCGGCCGGGTCGAACACGAGCGGGCGG GAGAGCGCAGGGTGCAGGGACTGCGTGGAGCCCGAGACGAGGACGAGGCGGCCGGCGGCG GCGACGGACTGCAGCGGGAGGCGGCGANCGAGGAAGGAGGGGTGCCAGANCATGGGCGGC GGCGACGGCATTGGCGGCGAGGGAAGCGCGTCCCAGCGTCCAGCCAAGGGGTCGTAGGCG GCAAACGAGACGCCGGCGTCGGCATCCGCGTCGTCGANGAGCGCGTACAGAGACAAAAAC GGCGGGGAACGACGGCGCGTACATGAGCCGTCTCCACNGCCGGCAAACGGCGTGCANGAG TCGCGGCGGGAGCGGCGAGAGGCAGACTGCGCCAGGTGGTCCGGCAACCCGGGGAGCAGC GGCTGCGGCGGCGTGGTGGTCGTCATCGTCGTCGGCGGCGGCGGCGCCACCGCCTCCTCT TCCATGCCGCCGTCCATGGCAGCAGCAGCTGGTAGCGAAGGGCGGAGCCGCTTGTGATTC TGGCCGGAGGAGGAAGTGATCGCCGTCGTGGTCGTCGTCGGCGGCGGCGGCTTGCAGTAG GGGCGCTTAGCCGCGGCCATCATGGTCGCAATACTACTATATNAGAGG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)