cluster # 5747

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Oryza sativa
cluster # 5747 cluster # 5747 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5747#0 length = 320 sequences # 2

consensus_5747#1 length = 214 sequences # 1

consensusID : consensus_5747#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 320
fasta sequence

                              [ACACCCCTTCCCCCCCGTGTCCAGCCACCACCACCGCGTCGTCGTCGTCGACCCAGCCATCCATCCCACCCACACGTCACCACCCGCGCATCCTCCCCCCGTGCTGCGGCGGCGGCGGCGGCCGGCGGCCATGGACATGGACAGCGTGGAGTGCCTCTCCCTCCCGGACTCGTCCATGGACGTGGACGACGTCGACGGCGGCGGCTCGGTGCACCACCACCACCACCACCACCACGCCCTCCCGCCTCACCTCCCCGCGGGGGTCGCCGTCGGGGTCGGCCCCGGGGGGCGCGCGTTCCCCAAGGCGAATGTCGCTGGGG]

[+] EMBL CB645829             [ACACCCCTTCCCCCCCGTGTCCAGCCACCACCACCGCGTCGTCGTCGTCGACCCAGCCATCCATCCCACCCACACGTCACCACCCGCGCATCCTCCCCCCGTGCTGCGGCGGCGGCGGCGGCCGGCGGCCATGGACATGGACAGCGTGGAGTGCCTCTCCCTCCCGGACTCGTCCATGGACGTGGACGACGTCGACGGCGGCGGCTCGGTGCACCACCACCACCACCACCACCACGCCCTCCCGCCTCACCTCCCCGCGGGGGTCGCCGTCGGGGTCGGCCCCGGGGGGCGCGCGTTCCCCAAGGCGAATGTCGCTGGGG]
[+] EMBL CB667118             [ CACCCCGTCCCCCCCGTGTCCAGCCACCACCACCGCGTCGTCGTCGTCGACCCAGCCATCCATCCCACCCACACGTCACCACCCGCGCATCCTCCCCCCGTGCTGCGGCGGCGGCGGCGGCCGGCGGCCATGGACATGGACAGCGTGGAGTGCCTCTCCCTCCCGGACTCGTCCATGGACGTGGACGACGTCGACGGCGGCGGCTCGGTGCACCACCACCACCACCACCACCACGCCCTCCCGCCTCACCTCCCCGCGGGGGTCGCCGTCGGGGTCGGCCCCGGGGGGCGCGCGTTCCCCAAGGCGAATGTCGCTGG  ]




>consensus_5747#0
ACACCCCTTCCCCCCCGTGTCCAGCCACCACCACCGCGTCGTCGTCGTCGACCCAGCCAT
CCATCCCACCCACACGTCACCACCCGCGCATCCTCCCCCCGTGCTGCGGCGGCGGCGGCG
GCCGGCGGCCATGGACATGGACAGCGTGGAGTGCCTCTCCCTCCCGGACTCGTCCATGGA
CGTGGACGACGTCGACGGCGGCGGCTCGGTGCACCACCACCACCACCACCACCACGCCCT
CCCGCCTCACCTCCCCGCGGGGGTCGCCGTCGGGGTCGGCCCCGGGGGGCGCGCGTTCCC
CAAGGCGAATGTCGCTGGGG

consensusID : consensus_5747#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 214
fasta sequence

                              [CCCGTCCCCCCCNTCCCCCCCGTGTCCAGCCACCACCACCGCGTCGTCGTCGTCGACCCAGCCATNCATCCCACCCACANGTCANCACCCGNGNATCCTNCCCCCGTGCTGNGGCGGCGGCGGCGGNCGGCGGCATGGACATGGACAGCGTGGAGTNCCTCTNCCTNCCGGACTTTGTCCATGGACGTGGACGACGTCGACGGCGGCGGCTCGG]

[+] EMBL OSC100501            [CCCGTCCCCCCCNTCCCCCCCGTGTCCAGCCACCACCACCGCGTCGTCGTCGTCGACCCAGCCATNCATCCCACCCACANGTCANCACCCGNGNATCCTNCCCCCGTGCTGNGGCGGCGGCGGCGGNCGGCGGCATGGACATGGACAGCGTGGAGTNCCTCTNCCTNCCGGACTTTGTCCATGGACGTGGACGACGTCGACGGCGGCGGCTCGG]




>consensus_5747#1
CCCGTCCCCCCCNTCCCCCCCGTGTCCAGCCACCACCACCGCGTCGTCGTCGTCGACCCA
GCCATNCATCCCACCCACANGTCANCACCCGNGNATCCTNCCCCCGTGCTGNGGCGGCGG
CGGCGGNCGGCGGCATGGACATGGACAGCGTGGAGTNCCTCTNCCTNCCGGACTTTGTCC
ATGGACGTGGACGACGTCGACGGCGGCGGCTCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5747#0      -----ACACCCCTTCCCCCCCGTGTCCAGCCACCACCACCGCGTCGTCGTCGTCGACCCA 55
consensus_5747#1      CCCGTCCCCCCCNTCCCCCCCGTGTCCAGCCACCACCACCGCGTCGTCGTCGTCGACCCA 60
                            * **** ***********************************************

consensus_5747#0      GCCATCCATCCCACCCACACGTCACCACCCGCGCATCCTCCCCCCGTGCTGCGGCGGCGG 115
consensus_5747#1      GCCATNCATCCCACCCACANGTCANCACCCGNGNATCCTNCCCCCGTGCTGNGGCGGCGG 120
                      ***** ************* **** ****** * ***** *********** ********

consensus_5747#0      CGGCGGCCGGCGGCCATGGACATGGACAGCGTGGAGTGCCTCTCCCTCCCGGACTC-GTC 174
consensus_5747#1      CGGCGGNCGGCGGC-ATGGACATGGACAGCGTGGAGTNCCTCTNCCTNCCGGACTTTGTC 179
                      ****** ******* ********************** ***** *** *******  ***

consensus_5747#0      CATGGACGTGGACGACGTCGACGGCGGCGGCTCGGTGCACCACCACCACCACCACCACCA 234
consensus_5747#1      CATGGACGTGGACGACGTCGACGGCGGCGGCTCGG------------------------- 214
                      ***********************************                         

consensus_5747#0      CGCCCTCCCGCCTCACCTCCCCGCGGGGGTCGCCGTCGGGGTCGGCCCCGGGGGGCGCGC 294
consensus_5747#1      ------------------------------------------------------------
                                                                                  

consensus_5747#0      GTTCCCCAAGGCGAATGTCGCTGGGG 320
consensus_5747#1      --------------------------