These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1836 fasta sequence [TTTCCGGGGGGTTCATGCAAATTGCAGGGTCGAGCTCGAGGAGGAGCAGCAATGGAGGCGCGCGGCGACCTGCGCTCGATCCTGCCCTACCTCCCCGTCGTGCTCCGCGGCGGCGCGCTCTTCTGGCCGCCGGCGGCGCAGGAGGCGCTCAAGGCGCTGGCGCTGGGCCCCGACGTGAGCCGCGTCTCCTCCGGCGACGTCCTCGCCGACGCCCTCACCGACCTCCGCCTCGCGCTCAACCTCGACCCACTCCCGCGCCGCGCCGCCGAGGGCTTCGCGCTCTTCTTCGACGACCTCCTGTCGCGGGCGCAGGCGCGGGACTGGTTCGACCACGTCGCCCCCTCCCTCGCCCGCCTCCTCCTCCGCCTCCCCACGCTGCTCGAGGGCCACTACCGCGCCGCCGGCGACGAGGCTCGCGGGCTCCGCATCCTGAGCTCGCAGGATGCCGGGCTCGTGCTCCTCAGCCAGGAGCTCGCCGCCGCGCTGCTCGCCTGCGCGCTCTTCTGCCTGTTCCCCACCGCCGATAGGGCCGAGGCGTGCCTCCCGGCGATCAATTTCGATAGCCTATTTGCGGCACTGTGTTATAATTCGAGGCAAAGCCAGGAGCAGAAGGTGAGGTGCCTTGTTCACTATTTTGACAGGGTGACCGCTTCTACACCTACTGGTTCCGTTTCGTTTGAGCGTAAGGTTCTTCCTCGCCGTCCTGAATCTGATGGCATTACGTACCCTGACATGGATACTTGGATGAAATCTGGTGTTCCCCTTTGCACATTCCGGTAGGTATTTTCCTCAGGCTTGATAGAAGATGAGGAACAAGAAGCCCTTGAAGTTGACTTTGCAAATAGATATTTGGGAGGTGGCGCACTTTCCAGAGGCTGCGTGCAGGAAGAAATCCGGTTCATGATAAACCCAGAATTGATCGTGGGCATGCTCTTCATGGTTTCAATGGAAGATAATGAAGCTATAGAAATTGTTGGTGCAGAAAGGTTCTCACAGTACATGGGGTATGGTTCCTCATTCCGTTTTACTGGTGACTACTTAGATAGCAAACCCTTTGATGCGATGGGTAGACGGAAAACTAGGATAGTGGCAATTGATGCTTTGGACTGTCCAACTAGGTTACAGTTTGAATCTAGTGGTCTTCTAAGGGAAGTGAACAAGGCTTTTTGTGGATTTTTGGATCAATCAAATCATCAGCTCTGTGCAAAGCTTGTCCAGGATTTAAATACAAAGGATAACTGTCCAAGTGTCATTCCTGATGAATGCATAGGAGTTTCAACTGGAAACTGGGGTTGCGGGGCTTTTGGTGGAAACCCTGAAATCAAGAGCATGATTCAATGGATTGCTGCATCACAGGCACTCCGATCTTTTATTAACTACTACACTTTTGAGTCCGAATCACTGAAAAGATTAGAAGAGGTGACCCAGTGGATATTGCGCCATAGGTGGACGGTTGGCGAGTTGTGGGACATGCTTGTGGAGTATTCATCCCAGAGGCTAAGAGGAGACACCAATGAGGGCTTTTTAACATGGCTACTTCCCAAGGACATCCCCAATGGTGATGTAGATTACATGTGTGAATAGCCCTTTGTTTAAATCAAGGAAACCGACCTAGGAAAAATGTGCATTGCTTGTTGGAAGCAGACTGAAACACCGTTTGTTGTGGCCTTGTGGCTGTGAGATCAACTTGTTGCGCCTGTATGGCAATCCTTACCTGCTTCTGATGGCAGTTTGCTCCATTCTCTATGCATTTGTGTCTAAATTCATCAATGTATTGTCAAAGAAGATGACAGATCTATAACGGAGTTCAATAGCATACGGAACATACTTATACTA] [+] EMBL AK068101 [TTTCCGGGGGGTTCATGCAAATTGCAGGGTCGAGCTCGAGGAGGAGCAGCAATGGAGGCGCGCGGCGACCTGCGCTCGATCCTGCCCTACCTCCCCGTCGTGCTCCGCGGCGGCGCGCTCTTCTGGCCGCCGGCGGCGCAGGAGGCGCTCAAGGCGCTGGCGCTGGGCCCCGACGTGAGCCGCGTCTCCTCCGGCGACGTCCTCGCCGACGCCCTCACCGACCTCCGCCTCGCGCTCAACCTCGACCCACTCCCGCGCCGCGCCGCCGAGGGCTTCGCGCTCTTCTTCGACGACCTCCTGTCGCGGGCGCAGGCGCGGGACTGGTTCGACCACGTCGCCCCCTCCCTCGCCCGCCTCCTCCTCCGCCTCCCCACGCTGCTCGAGGGCCACTACCGCGCCGCCGGCGACGAGGCTCGCGGGCTCCGCATCCTGAGCTCGCAGGATGCCGGGCTCGTGCTCCTCAGCCAGGAGCTCGCCGCCGCGCTGCTCGCCTGCGCGCTCTTCTGCCTGTTCCCCACCGCCGATAGGGCCGAGGCGTGCCTCCCGGCGATCAATTTCGATAGCCTATTTGCGGCACTGTGTTATAATTCGAGGCAAAGCCAGGAGCAGAAGGTGAGGTGCCTTGTTCACTATTTTGACAGGGTGACCGCTTCTACACCTACTGGTTCCGTTTCGTTTGAGCGTAAGGTTCTTCCTCGCCGTCCTGAATCTGATGGCATTACGTACCCTGACATGGATACTTGGATGAAATCTGGTGTTCCCCTTTGCACATTCCGGTAGGTATTTTCCTCAGGCTTGATAGAAGATGAGGAACAAGAAGCCCTTGAAGTTGACTTTGCAAATAGATATTTGGGAGGTGGCGCACTTTCCAGAGGCTGCGTGCAGGAAGAAATCCGGTTCATGATAAACCCAGAATTGATCGTGGGCATGCTCTTCATGGTTTCAATGGAAGATAATGAAGCTATAGAAATTGTTGGTGCAGAAAGGTTCTCACAGTACATGGGGTATGGTTCCTCATTCCGTTTTACTGGTGACTACTTAGATAGCAAACCCTTTGATGCGATGGGTAGACGGAAAACTAGGATAGTGGCAATTGATGCTTTGGACTGTCCAACTAGGTTACAGTTTGAATCTAGTGGTCTTCTAAGGGAAGTGAACAAGGCTTTTTGTGGATTTTTGGATCAATCAAATCATCAGCTCTGTGCAAAGCTTGTCCAGGATTTAAATACAAAGGATAACTGTCCAAGTGTCATTCCTGATGAATGCATAGGAGTTTCAACTGGAAACTGGGGTTGCGGGGCTTTTGGTGGAAACCCTGAAATCAAGAGCATGATTCAATGGATTGCTGCATCACAGGCACTCCGATCTTTTATTAACTACTACACTTTTGAGTCCGAATCACTGAAAAGATTAGAAGAGGTGACCCAGTGGATATTGCGCCATAGGTGGACGGTTGGCGAGTTGTGGGACATGCTTGTGGAGTATTCATCCCAGAGGCTAAGAGGAGACACCAATGAGGGCTTTTTAACATGGCTACTTCCCAAGGACATCCCCAATGGTGATGTAGATTACATGTGTGAATAGCCCTTTGTTTAAATCAAGGAAACCGACCTAGGAAAAATGTGCATTGCTTGTTGGAAGCAGACTGAAACACCGTTTGTTGTGGCCTTGTGGCTGTGAGATCAACTTGTTGCGCCTGTATGGCAATCCTTACCTGCTTCTGATGG ] [-] EMBL CB629126 [ CAAACCCTTTGATGCGATGGGTAGACGGAAAACTAGGATAGTGGCAATTGATGCTTTGGACTGTCCAACTAGGTTACAGTTTGAATCTAGTGGTCTTCTAAGGGAAGTGAACAAGGCTTTTTGTGGATTTTTGGATCAATCAAATCATCAGCTCTGTGCAAAGCTTGTCCAGGATTTAAATACAAAGGATAACTGTCCAAGTGTCATTCCTGATGAATGCATAGGAGTTTCAACTGGAAACTGGGGTTGCGGGGCTTTTGGTGGAAACCCTGAAATCAAGAGCATGATTCAATGGATTGCTGCATCACAGGCACTCCGATCTTTTATTAACTACTACACTTTTGAGTCCGAATCACTGAAAAGATTAGAAGAGGTGACCCAGTGGATATTGCGCCATAGGTGGACGGTTGGCGAGTTGTGGGACATGCTTGTGGAGTATTCATCCCAGAGGCTAAGAGGAGACACCAATGAGGGCTTTTTAACATGGCTACTTCCCAAGGACATCCCCAATGGTGATGTAGATTACATGTGTGAATAGCCCTTTGTTTAAATCAAGGAAACCGACCTAGGAAAAATGTGCATTGCTTGTTGGAAGCAGACTGAAACACCGTTTGTTGTGGCCTTGTGGCTGTGAGATCAACTTGTTGCGCCTGTATGGCAATCCTTACCTGCTTCTGATGGCAGTTTGCTCCATTCTCTATGCATTTGTGTCTAAATTCATCAATGTATTGTCAAAGAAGATGACAGATCTATAACGGAGTTCAATAGCATACGGAACATACTTATACTA] consensusID : consensus_5753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 834 fasta sequence [TTTCGATTTCCGGGGGGTTCATGCAAATTGCAAGGTCGAGCTCGAGGAGGAGCAGCAATGGAGGCGCGCGGCGACCTGCGCTCGATCCTGCCCTACCTCCCCGTCGTGCTCCGCGGCGGCGCGCTCTTCTGGCCGCCGGCGGCGCAGGAGGCGCTCAAGGCGCTGGCGCTGGGCCCCGACGTGAGCCGCGTCTCCTCCGGCGACGTCCTCGCCGACGCCCTCACCGACCTCCGCCTCGCGCTCAACCTCGACCCACTCCCGCGCCGCGCCGCCGAGGGCTTCGCGCTCTTCTTCGACGACCTCCTGTCGCGGGCGCAGGCGCGGGACTGGTTCGACCACGTCGCCCCCTCCCTCGCCCGCCTCCTCCTCCGCCTCCCCACGCTGCTCGAGGGCCACTACCGCGCCGCCGGCGACGAGGCTCGCGGGCTCCGCATCCTGAGCTCGCAGGATGCCGGGCTCGTGCTCCTCAGCCAGGAGCTCGCCGCCGCGCTGCTCGCCTGCGCGCTCTTCTGCCTGTTCCCCACCGCCGATAGGGCCGAGGCGTGCCTCCCGGCGATCAATTTCGATAGCCTATTTGCGTAATTCCACTGCCATTTTGATCTAGTTTTCTTAGAGTTGGTACATTTGGGCTAAATGATTGAACTTTTCGAGCTTATTGGTTATGCTTTTGTGGTTTACTGATTGATCCATAGGGCACTGTGTTATAATTCGAGGCAAAGCCAGGAGCAGAAGGTGAGGTGCCTTGTTCACTATTTTGACAGGGTGACCGCTTCTACACCTACTGGTTCCGTTTCGTTTGAGCGTAAGTTCTTCCTCGCCGTCCTGAATCTGATG] [+] EMBL CB629125 [TTTCGATTTCCGGGGGGTTCATGCAAATTGCAAGGTCGAGCTCGAGGAGGAGCAGCAATGGAGGCGCGCGGCGACCTGCGCTCGATCCTGCCCTACCTCCCCGTCGTGCTCCGCGGCGGCGCGCTCTTCTGGCCGCCGGCGGCGCAGGAGGCGCTCAAGGCGCTGGCGCTGGGCCCCGACGTGAGCCGCGTCTCCTCCGGCGACGTCCTCGCCGACGCCCTCACCGACCTCCGCCTCGCGCTCAACCTCGACCCACTCCCGCGCCGCGCCGCCGAGGGCTTCGCGCTCTTCTTCGACGACCTCCTGTCGCGGGCGCAGGCGCGGGACTGGTTCGACCACGTCGCCCCCTCCCTCGCCCGCCTCCTCCTCCGCCTCCCCACGCTGCTCGAGGGCCACTACCGCGCCGCCGGCGACGAGGCTCGCGGGCTCCGCATCCTGAGCTCGCAGGATGCCGGGCTCGTGCTCCTCAGCCAGGAGCTCGCCGCCGCGCTGCTCGCCTGCGCGCTCTTCTGCCTGTTCCCCACCGCCGATAGGGCCGAGGCGTGCCTCCCGGCGATCAATTTCGATAGCCTATTTGCGTAATTCCACTGCCATTTTGATCTAGTTTTCTTAGAGTTGGTACATTTGGGCTAAATGATTGAACTTTTCGAGCTTATTGGTTATGCTTTTGTGGTTTACTGATTGATCCATAGGGCACTGTGTTATAATTCGAGGCAAAGCCAGGAGCAGAAGGTGAGGTGCCTTGTTCACTATTTTGACAGGGTGACCGCTTCTACACCTACTGGTTCCGTTTCGTTTGAGCGTAAGTTCTTCCTCGCCGTCCTGAATCTGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5753#0 ------TTTCCGGGGGGTTCATGCAAATTGCAGGGTCGAGCTCGAGGAGGAGCAGCAATG 54 consensus_5753#1 TTTCGATTTCCGGGGGGTTCATGCAAATTGCAAGGTCGAGCTCGAGGAGGAGCAGCAATG 60 ************************** *************************** consensus_5753#0 GAGGCGCGCGGCGACCTGCGCTCGATCCTGCCCTACCTCCCCGTCGTGCTCCGCGGCGGC 114 consensus_5753#1 GAGGCGCGCGGCGACCTGCGCTCGATCCTGCCCTACCTCCCCGTCGTGCTCCGCGGCGGC 120 ************************************************************ consensus_5753#0 GCGCTCTTCTGGCCGCCGGCGGCGCAGGAGGCGCTCAAGGCGCTGGCGCTGGGCCCCGAC 174 consensus_5753#1 GCGCTCTTCTGGCCGCCGGCGGCGCAGGAGGCGCTCAAGGCGCTGGCGCTGGGCCCCGAC 180 ************************************************************ consensus_5753#0 GTGAGCCGCGTCTCCTCCGGCGACGTCCTCGCCGACGCCCTCACCGACCTCCGCCTCGCG 234 consensus_5753#1 GTGAGCCGCGTCTCCTCCGGCGACGTCCTCGCCGACGCCCTCACCGACCTCCGCCTCGCG 240 ************************************************************ consensus_5753#0 CTCAACCTCGACCCACTCCCGCGCCGCGCCGCCGAGGGCTTCGCGCTCTTCTTCGACGAC 294 consensus_5753#1 CTCAACCTCGACCCACTCCCGCGCCGCGCCGCCGAGGGCTTCGCGCTCTTCTTCGACGAC 300 ************************************************************ consensus_5753#0 CTCCTGTCGCGGGCGCAGGCGCGGGACTGGTTCGACCACGTCGCCCCCTCCCTCGCCCGC 354 consensus_5753#1 CTCCTGTCGCGGGCGCAGGCGCGGGACTGGTTCGACCACGTCGCCCCCTCCCTCGCCCGC 360 ************************************************************ consensus_5753#0 CTCCTCCTCCGCCTCCCCACGCTGCTCGAGGGCCACTACCGCGCCGCCGGCGACGAGGCT 414 consensus_5753#1 CTCCTCCTCCGCCTCCCCACGCTGCTCGAGGGCCACTACCGCGCCGCCGGCGACGAGGCT 420 ************************************************************ consensus_5753#0 CGCGGGCTCCGCATCCTGAGCTCGCAGGATGCCGGGCTCGTGCTCCTCAGCCAGGAGCTC 474 consensus_5753#1 CGCGGGCTCCGCATCCTGAGCTCGCAGGATGCCGGGCTCGTGCTCCTCAGCCAGGAGCTC 480 ************************************************************ consensus_5753#0 GCCGCCGCGCTGCTCGCCTGCGCGCTCTTCTGCCTGTTCCCCACCGCCGATAGGGCCGAG 534 consensus_5753#1 GCCGCCGCGCTGCTCGCCTGCGCGCTCTTCTGCCTGTTCCCCACCGCCGATAGGGCCGAG 540 ************************************************************ consensus_5753#0 GCGTGCCTCCCGGCGATCAATTTCGATAGCCTATTTGCGGCACTGTGTTATAATTCGAGG 594 consensus_5753#1 GCGTGCCTCCCGGCGATCAATTTCGATAGCCTATTTGCGTAATTCCACTGCCATTTTGAT 600 *************************************** * * * *** consensus_5753#0 CAAAGCCAGGAGCAGAAGGTGAGGT--GCCTTGTTCACT-ATTTTGACAGGGTGACCGCT 651 consensus_5753#1 CTAGTTTTCTTAGAGTTGGTACATTTGGGCTAAATGATTGAACTTTTCGAGCTTATTGGT 660 * * ** *** * * ** * * * * ** * * * * * * consensus_5753#0 TCTACACCTACTGGTT-CCGTTTCGTTTGAGCGTAAGGTTCTTCCTCGCCGTCCTGAATC 710 consensus_5753#1 TATGCTTTTGTGGTTTACTGATTGATCCATAGGGCACTGTGTTATAATTCGAGGCAAAGC 720 * * * * * ** * * ** * * * * ** ** ** * consensus_5753#0 TGATGGCATTACGTACCCTGACATGGATACTTGGATGAAATCTGGTGTTCCCCTTTGCAC 770 consensus_5753#1 CAGGAGCAGAAGGTGAGGTGCCTTGTTCACTATTTTGACA--GGGTGACCGCTTCTACAC 778 *** * ** ** * ** *** *** * **** * * * * *** consensus_5753#0 ATTCCGGTAGGTATTTTCCTCAGGCTTGATAGAAGATGAGGAACAAGAAGCCCTTGAAGT 830 consensus_5753#1 CTACTGGT-------TCCGTTTCGTTTGAGCGTAAGTTCTTC-CTCGCCGTCCT-GAATC 829 * * *** * * * * **** * * * * * * *** *** consensus_5753#0 TGACTTTGCAAATAGATATTTGGGAGGTGGCGCACTTTCCAGAGGCTGCGTGCAGGAAGA 890 consensus_5753#1 TGATG------------------------------------------------------- 834 *** consensus_5753#0 AATCCGGTTCATGATAAACCCAGAATTGATCGTGGGCATGCTCTTCATGGTTTCAATGGA 950 consensus_5753#1 ------------------------------------------------------------ consensus_5753#0 AGATAATGAAGCTATAGAAATTGTTGGTGCAGAAAGGTTCTCACAGTACATGGGGTATGG 1010 consensus_5753#1 ------------------------------------------------------------ consensus_5753#0 TTCCTCATTCCGTTTTACTGGTGACTACTTAGATAGCAAACCCTTTGATGCGATGGGTAG 1070 consensus_5753#1 ------------------------------------------------------------ consensus_5753#0 ACGGAAAACTAGGATAGTGGCAATTGATGCTTTGGACTGTCCAACTAGGTTACAGTTTGA 1130 consensus_5753#1 ------------------------------------------------------------ consensus_5753#0 ATCTAGTGGTCTTCTAAGGGAAGTGAACAAGGCTTTTTGTGGATTTTTGGATCAATCAAA 1190 consensus_5753#1 ------------------------------------------------------------ consensus_5753#0 TCATCAGCTCTGTGCAAAGCTTGTCCAGGATTTAAATACAAAGGATAACTGTCCAAGTGT 1250 consensus_5753#1 ------------------------------------------------------------ consensus_5753#0 CATTCCTGATGAATGCATAGGAGTTTCAACTGGAAACTGGGGTTGCGGGGCTTTTGGTGG 1310 consensus_5753#1 ------------------------------------------------------------ consensus_5753#0 AAACCCTGAAATCAAGAGCATGATTCAATGGATTGCTGCATCACAGGCACTCCGATCTTT 1370 consensus_5753#1 ------------------------------------------------------------ consensus_5753#0 TATTAACTACTACACTTTTGAGTCCGAATCACTGAAAAGATTAGAAGAGGTGACCCAGTG 1430 consensus_5753#1 ------------------------------------------------------------ consensus_5753#0 GATATTGCGCCATAGGTGGACGGTTGGCGAGTTGTGGGACATGCTTGTGGAGTATTCATC 1490 consensus_5753#1 ------------------------------------------------------------ consensus_5753#0 CCAGAGGCTAAGAGGAGACACCAATGAGGGCTTTTTAACATGGCTACTTCCCAAGGACAT 1550 consensus_5753#1 ------------------------------------------------------------ consensus_5753#0 CCCCAATGGTGATGTAGATTACATGTGTGAATAGCCCTTTGTTTAAATCAAGGAAACCGA 1610 consensus_5753#1 ------------------------------------------------------------ consensus_5753#0 CCTAGGAAAAATGTGCATTGCTTGTTGGAAGCAGACTGAAACACCGTTTGTTGTGGCCTT 1670 consensus_5753#1 ------------------------------------------------------------ consensus_5753#0 GTGGCTGTGAGATCAACTTGTTGCGCCTGTATGGCAATCCTTACCTGCTTCTGATGGCAG 1730 consensus_5753#1 ------------------------------------------------------------ consensus_5753#0 TTTGCTCCATTCTCTATGCATTTGTGTCTAAATTCATCAATGTATTGTCAAAGAAGATGA 1790 consensus_5753#1 ------------------------------------------------------------ consensus_5753#0 CAGATCTATAACGGAGTTCAATAGCATACGGAACATACTTATACTA 1836 consensus_5753#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||