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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5755#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1293 fasta sequence
[CGACACCGACCGACCGAGCCCTCGCCGCGCGCCGCGCCGATGCCGCAAGCCTCCTCCTCCTCCTCGCCGGCGACGGCGGCGGCGCCGCCTCCGCCGCAGCCTGCGGCGGACCCTTCTCCGTCGGCTGTGCCAGCTTCGGAGGAGGCGCTGGACCCGCAGACGCCGGCGCCGCCGCCGCAGGCGCAGCCGGAGGCCGTGCTGACCGCCGCGCAGAAGGCGCTCCGCTCCAAGCCGACGAGGCCGCCCGAAGACTCCGACAAGAAGAATAAAAAACTCAAGGATGTGGAGATCAGTTTCCCAATTGTCTATGGAACCATTTCTTTCTGGCTTGGCAAGAAGGCAAGCGAGTACAACTCTCACAAATGGACTGTGTATGTTCGCTCTGCAACAAATGAGGATTTAAGTGTGATAGTTAAGCGTGTGGTGTTTCAACTTCACCCGAGTTTCACTAATCCAACAAGAGTTGTAGAGCAACCACCTTTCGAGTTGTCTGAATCTGGCTGGGGAGAATTTGAAATTGCAATAACCCTTTATTTCCACAGTGACGTGTGTGAAAAGCGTCTGGATTTGTTTCATCAACTTAAACTGTATCCAGAAGAGGACACTGGACCACAATCAAC-TAAAAAGCCTGTTGTCGTGGAAACGTACGATGAAATTGTCTTCCCTGAGCCCACTGAGGCCTTTTTCCAACGAGTACAAAATCATCCAGCTGCTACTGTGCCTAGGTTGCCTCCTGGTATAACCTCGCCTCCTCCAGGCCCTATGGAACTTGTGCCACATGAAAAGAAGCGTGGTGACACTAAGGATCATCCTTTGAGCCAGTGGTTCTCAAATTTCTCTGAAGCTGATGAACTATTAAAACTGGCTGCTGCTCGGCAACAGGTGCAAGCTCACATAGCTAAGCTGAGAAGGCAATTAAGCATGATAGATGGAATGCCTCAGCAATCCAAAGCTGTTTCTGTTCAAGGCCAACAATTTGGGCACGGCTAATTTGCTACAAGTGCTGTCATAAGGAAGATGTTGGGATCTGATAACAACGCTCTAACTAGATGATAACAAGTGTATCACTGTATTTCCATTGTAGCTGTTGCCTTAGCCCTTGGGCTTGCAATTAATGTACTAACAAGCAGTGTCATTGTGCATATATTCTACTATGATTTCATTCATCTTATGAGAACACCTACTTCTCTGATTGGCCCTTTTACTCCATACTGAAAGGGCTCATCTAAGCTGTTAATTTTTGCCCTGCTATATTATGGACATTCTAGAACAAGTACGATTGCTTAAAAAAAA]
[+] EMBL AK109053 [CGACACCGACCGACCGAGCCCTCGCCGCGCGCCGCGCCGATGCCGCAAGCCTCCTCCTCCTCCTCGCCGGCGACGGCGGCGGCGCCGCCTCCGCCGCAGCCTGCGGCGGACCCTTCTCCGTCGGCTGTGCCAGCTTCGGAGGAGGCGCTGGACCCGCAGACGCCGGCGCCGCCGCCGCAGGCGCAGCCGGAGGCCGTGCTGACCGCCGCGCAGAAGGCGCTCCGCTCCAAGCCGACGAGGCCGCCCGAAGACTCCGACAAGAAGAATAAAAAACTCAAGGATGTGGAGATCAGTTTCCCAATTGTCTATGGAACCATTTCTTTCTGGCTTGGCAAGAAGGCAAGCGAGTACAACTCTCACAAATGGACTGTGTATGTTCGCTCTGCAACAAATGAGGATTTAAGTGTGATAGTTAAGCGTGTGGTGTTTCAACTTCACCCGAGTTTCACTAATCCAACAAGAGTTGTAGAGCAACCACCTTTCGAGTTGTCTGAATCTGGCTGGGGAGAATTTGAAATTGCAATAACCCTTTATTTCCACAGTGACGTGTGTGAAAAGCGTCTGGATTTGTTTCATCAACTTAAACTGTATCCAGAAGAGGACACTGGACCACAATCAAC TAAAAAGCCTGTTGTCGTGGAAACGTACGATGAAATTGTCTTCCCTGAGCCCACTGAGGCCTTTTTCCAACGAGTACAAAATCATCCAGCTGCTACTGTGCCTAGGTTGCCTCCTGGTATAACCTCGCCTCCTCCAGGCCCTATGGAACTTGTGCCACATGAAAAGAAGCGTGGTGACACTAAGGATCATCCTTTGAGCCAGTGGTTCTCAAATTTCTCTGAAGCTGATGAACTATTAAAACTGGCTGCTGCTCGGCAACAGGTGCAAGCTCACATAGCTAAGCTGAGAAGGCAATTAAGCATGATAGATGGAATGCCTCAGCAATCCAAAGCTGTTTCTGTTCAAGGCCAACAATTTGGGCACGGCTAATTTGCTACAAGTGCTGTCATAAGGAAGATGTTGGGATCTGATAACAACGCTCTAACTAGATGATAACAAGTGTATCACTGTATTTCCATTGTAGCTGTTGCCTTAGCCCTTGGGCTTGCAATTAATGTACTAACAAGCAGTGTCATTGTGCATATATTCTACTATGATTTCATTCATCTTATGAGAACACC ]
[+] EMBL AU067877 [ AACTTAAAAAGCNTGTTGTCGTGNAAACGTACGATGAAATTGTCTTCCTTGAGCCCACTGAGGCCTTTTTCCAACGAGTACAAAATCATCCAGCTGCTACTGTGCCTAGGTTGCCTCCTGGTATAACCTTGCCTCCTCCAGGCCCTATGGAACTTGTGCCACATGAAAAGAAGCGTGGTGACACTAAGGATCATCCTTTGAGCCAGTGGTTCTCAAATTTCTCTGAAGCTGATGAACTATTAAAACTGGCTGCTGCTCGGCAACAGGTGCAAGCTCACATAGCTAAGCTGAGAAGGCAATTAAGCATGATAGATGGAATGCCTCAGCAATCCAAAGCTGTTTCTGTTCAAGGCCAACAATTTGGGCACGGCTAATTTGCTACAAGTGCTGTCATAAGGAAGATGTTGGGATCTGATAACAACGCTCTAACTAGATGATAACAAGTGTATCACTGTATTTCCATTGTAGCTGTTGCCTTAGCCCTTGGGCTTGCAATTAATGTACTAACAAGCAGTGTCATTGTGCATATATTCTACTATGATTTCATTCATCTTATGAGAACACCTACTTCTCTGATTGGCCCTTTTACTCCATACTGAAAGGGCTCATCTAAGCTGTTAATTTTTGCCCTGCTATATTATGGACATTCTAGAACAAGTACGATTGCTTAAAAAAAA]
consensusID : consensus_5755#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 183 fasta sequence
[AGAGGACGAGACAAGGGGGGATTTGATAACAACGCTCTAACTAGATGATAACAAGTGTATCCCTGTATTTCCATTGTAGCTGTTGCCTTAGCCCTTGGGCTTGCAATTAATGTACTAACAAGCAGTGTCATTGTGCATATATTTTACTATGATTTCATTCCTTTTATGAAAAAAAAAAAAAAA]
[-] EMBL CA760864 [AGAGGACGAGACAAGGGGGGATTTGATAACAACGCTCTAACTAGATGATAACAAGTGTATCCCTGTATTTCCATTGTAGCTGTTGCCTTAGCCCTTGGGCTTGCAATTAATGTACTAACAAGCAGTGTCATTGTGCATATATTTTACTATGATTTCATTCCTTTTATGAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5755#0 CGACACCGACCGACCGAGCCCTCGCCGCGCGCCGCGCCGATGCCGCAAGCCTCCTCCTCC 60
consensus_5755#1 ------------------------------------------------------------
consensus_5755#0 TCCTCGCCGGCGACGGCGGCGGCGCCGCCTCCGCCGCAGCCTGCGGCGGACCCTTCTCCG 120
consensus_5755#1 ------------------------------------------------------------
consensus_5755#0 TCGGCTGTGCCAGCTTCGGAGGAGGCGCTGGACCCGCAGACGCCGGCGCCGCCGCCGCAG 180
consensus_5755#1 ------------------------------------------------------------
consensus_5755#0 GCGCAGCCGGAGGCCGTGCTGACCGCCGCGCAGAAGGCGCTCCGCTCCAAGCCGACGAGG 240
consensus_5755#1 ------------------------------------------------------------
consensus_5755#0 CCGCCCGAAGACTCCGACAAGAAGAATAAAAAACTCAAGGATGTGGAGATCAGTTTCCCA 300
consensus_5755#1 ------------------------------------------------------------
consensus_5755#0 ATTGTCTATGGAACCATTTCTTTCTGGCTTGGCAAGAAGGCAAGCGAGTACAACTCTCAC 360
consensus_5755#1 ------------------------------------------------------------
consensus_5755#0 AAATGGACTGTGTATGTTCGCTCTGCAACAAATGAGGATTTAAGTGTGATAGTTAAGCGT 420
consensus_5755#1 ------------------------------------------------------------
consensus_5755#0 GTGGTGTTTCAACTTCACCCGAGTTTCACTAATCCAACAAGAGTTGTAGAGCAACCACCT 480
consensus_5755#1 ------------------------------------------------------------
consensus_5755#0 TTCGAGTTGTCTGAATCTGGCTGGGGAGAATTTGAAATTGCAATAACCCTTTATTTCCAC 540
consensus_5755#1 ------------------------------------------------------------
consensus_5755#0 AGTGACGTGTGTGAAAAGCGTCTGGATTTGTTTCATCAACTTAAACTGTATCCAGAAGAG 600
consensus_5755#1 ------------------------------------------------------------
consensus_5755#0 GACACTGGACCACAATCAACTAAAAAGCCTGTTGTCGTGGAAACGTACGATGAAATTGTC 660
consensus_5755#1 ------------------------------------------------------------
consensus_5755#0 TTCCCTGAGCCCACTGAGGCCTTTTTCCAACGAGTACAAAATCATCCAGCTGCTACTGTG 720
consensus_5755#1 ------------------------------------------------------------
consensus_5755#0 CCTAGGTTGCCTCCTGGTATAACCTCGCCTCCTCCAGGCCCTATGGAACTTGTGCCACAT 780
consensus_5755#1 ------------------------------------------------------------
consensus_5755#0 GAAAAGAAGCGTGGTGACACTAAGGATCATCCTTTGAGCCAGTGGTTCTCAAATTTCTCT 840
consensus_5755#1 ------------------------------------------------------------
consensus_5755#0 GAAGCTGATGAACTATTAAAACTGGCTGCTGCTCGGCAACAGGTGCAAGCTCACATAGCT 900
consensus_5755#1 ------------------------------------------------------------
consensus_5755#0 AAGCTGAGAAGGCAATTAAGCATGATAGATGGAATGCCTCAGCAATCCAAAGCTGTTTCT 960
consensus_5755#1 ------------------------------------------------------------
consensus_5755#0 GTTCAAGGCCAACAATTTGGGCACGGCTAATTTGCTACAAGTGCTGTCATAAGGAAGATG 1020
consensus_5755#1 ---------------------------------------------AGAGGACGAGACAAG 15
* * * * *
consensus_5755#0 TTGGGATCTGATAACAACGCTCTAACTAGATGATAACAAGTGTATCACTGTATTTCCATT 1080
consensus_5755#1 GGGGGATTTGATAACAACGCTCTAACTAGATGATAACAAGTGTATCCCTGTATTTCCATT 75
***** ************************************** *************
consensus_5755#0 GTAGCTGTTGCCTTAGCCCTTGGGCTTGCAATTAATGTACTAACAAGCAGTGTCATTGTG 1140
consensus_5755#1 GTAGCTGTTGCCTTAGCCCTTGGGCTTGCAATTAATGTACTAACAAGCAGTGTCATTGTG 135
************************************************************
consensus_5755#0 CATATATTCTACTATGATTTCATTCATCTTATGAGAACACCTACTTCTCTGATTGGCCCT 1200
consensus_5755#1 CATATATTTTACTATGATTTCATTCCTTTTATGAAAAAAAAAAAAAAA------------ 183
******** **************** * ****** ** * *
consensus_5755#0 TTTACTCCATACTGAAAGGGCTCATCTAAGCTGTTAATTTTTGCCCTGCTATATTATGGA 1260
consensus_5755#1 ------------------------------------------------------------
consensus_5755#0 CATTCTAGAACAAGTACGATTGCTTAAAAAAAA 1293
consensus_5755#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||