Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5759 cluster # 5759       Sequences # 3       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5759#0 length = 880 sequences # 3  
consensusID : consensus_5759#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 880
fasta sequence 
                              [CACACCCCACTTCTTTGATCGATCGATCGATCGATCTGCGCCTCTTCTTCTCCAAGATGTCGACGGCGGCTGCACCGTCAGCTTCGGCTCCGCGGCGACCGACACGACGGTCACCAGCGACGCCGCGGCGGCCGACGAGTGGGTGCGCCGCGTCCGCGCCTCGGCCGCCACCACCCCGCGCGGCGGCGGGGGCCTCCTCGTCGGCCTCGACTGCGAGTGGAAGCCCTGCGACCACCTCTGGCCGGCGGTGGCGCCCACGGTGGCCATCCTCCAGCTCTGCGCCGGCGACAGCTGCCTCATCCTGCAGCTGCTCCACGTCGCCGGCGCCCGCCGGGTCCCGCCCCTCGTCGGGGACCTCCTCGCCGACCCGTCCGTCCGCCTCGTCGGCATCGGCATCGGCGAGAACGCCGCCAAGCTGGCCGACGGCTACGGCGTGCGGTGCGCGGCGCCGGTGGACCTGGAGGACGTCTGCGACCGCCGCCTCGGGCGCCTCCCCGGCGCGAGGAGGCTGGGGCTCAAGGGATACGTGAGGGAGGTGCTGGGGCTGACCATGGAGAAGCCCATGGACGTGACCAGGAGCGACTGGGAGAGGCGCCACCTCGACGCCGCTCAGGTCCGCTACGCGTGCTCGGCGAGAGGGTCCTCACCAACTAGTCGCCAACGCGATCGCCATGCGTGCTTGCAGTGCACTTGGGTCGTCATATGATATGATCATATCTATCCTAAATTATAGTATTGTTGCCGTGCTGTTGCAATGATCGATCTAGCTACTAGCAAAAAGCTACGCATATAGTGTGGCAACGTTATGTGCAATCGGCAGCTATCTTAGTTATCTATCGAAATATTATTCGATCTACTTATCTGATCTATATATGGCTGC]

[+] EMBL AK108504             [CACACCCCACTTCTTTGATCGATCGATCGATCGATCTGCGCCTCTTCTTCTCCAAGATGTCGACGGCGGCTGCACCGTCAGCTTCGGCTCCGCGGCGACCGACACGACGGTCACCAGCGACGCCGCGGCGGCCGACGAGTGGGTGCGCCGCGTCCGCGCCTCGGCCGCCACCACCCCGCGCGGCGGCGGGGGCCTCCTCGTCGGCCTCGACTGCGAGTGGAAGCCCTGCGACCACCTCTGGCCGGCGGTGGCGCCCACGGTGGCCATCCTCCAGCTCTGCGCCGGCGACAGCTGCCTCATCCTGCAGCTGCTCCACGTCGCCGGCGCCCGCCGGGTCCCGCCCCTCGTCGGGGACCTCCTCGCCGACCCGTCCGTCCGCCTCGTCGGCATCGGCATCGGCGAGAACGCCGCCAAGCTGGCCGACGGCTACGGCGTGCGGTGCGCGGCGCCGGTGGACCTGGAGGACGTCTGCGACCGCCGCCTCGGGCGCCTCCCCGGCGCGAGGAGGCTGGGGCTCAAGGGATACGTGAGGGAGGTGCTGGGGCTGACCATGGAGAAGCCCATGGACGTGACCAGGAGCGACTGGGAGAGGCGCCACCTCGACGCCGCTCAGGTCCGCTACGCGTGCTCGGCGAGAGGGTCCTCACCAACTAGTCGCCAACGCGATCGCCATGCGTGCTTGCAGTGCACTTGGGTCGTCATATGATATGATCATATCTATCCTAAATTATAGTATTGTTGCCGTGCTGTTGCAATGATCGATCTAGCTACTAGCAAAAAGCTACGCATATAGTGTGGCAACGTTATGTGCAATCGGCAGCTATCTTAGTTATCTATCGAAATATTATTCGATCTACTTATCTGATCTATATATGGCTGC]
[+] EMBL AU093579             [                GATCGATCGATCGATCGATCTGCGCCTCTTCTTCTCCAAGATGTCGACGGCGGCTGCACCGTCAGCTTCGGCTCCGCGGCGATCGACACGACGGTCACCAGCGACGCCGCGGCGGCCGACGAGTGGGTGCGCCGCGTCCGCGCCTCGGCCG CACCACCCCGCGCGGCGGCGGGGGCCTCCTCGTCGGCCTCGACTGCGAGTGGAAGCCCTGCGACCACCTCTGGCCGGCGGTGGCGCCCACGGTGG CATCCT CAGCTCTGCGCCGGCGACAGCTG CTCAT CTGNA CTGCTTCACGTCGCCGGCGCCCGCCGGGTCCCG CCCTTGTCGGGGACCT CTNGGCGA CCGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU093580             [                                                                                                                                                                                                                                                         gcgGCCCACGGTGGCCATCCTCCAGCTNTGCGCCGGCGACAGCTGCCTCATCCTGCAGCTGCTCCACGTCGCCGGCGCCCGCCGGGTCCCGCCCCTCGTCGGGGACCTCCTCGCCGACCCGTCCGTCCGCCTCGTCGGCATCGGCATCGGCGAGAACGCCGCCAAGCTGGCCGACGGCTACGGCGTGCGGTGCGCGGCGCCGGTGGACCTGGAGGACGTCTGCGACCGCCGCCTCGGGCGCCTCCCCGGCGCGAGNAGGCTGGGGCTCAAGGGATACGTGAGGGAGGTGCTGGGGCTGACCATGGAGAAGCCCATGGACGTGACCAGGAGCGACTGGGAGAGGCGCCACCTCGACGCCGCTCAGGTCCGCTACGCGTGCTCGGCGAGAGGGTCCTCACCAACTAGTCGCCAACGCGATCGCCATGCGTGCTTGCAGTGCACTTGGGTCGTCATATGATATGATCATATCTATCCTAAATTATAGTATTGTTGCCGTGCTGTTGCAATGATCGATCTAGCTACTAGCAAAAAGCTACGCATATAGTGTGGCAACGTTATGTGCAATCGGCAGCTATCTTAGTTATCTATCGAAATATTATTCGATCTAaaaaaa                  ]




>consensus_5759#0
CACACCCCACTTCTTTGATCGATCGATCGATCGATCTGCGCCTCTTCTTCTCCAAGATGT
CGACGGCGGCTGCACCGTCAGCTTCGGCTCCGCGGCGACCGACACGACGGTCACCAGCGA
CGCCGCGGCGGCCGACGAGTGGGTGCGCCGCGTCCGCGCCTCGGCCGCCACCACCCCGCG
CGGCGGCGGGGGCCTCCTCGTCGGCCTCGACTGCGAGTGGAAGCCCTGCGACCACCTCTG
GCCGGCGGTGGCGCCCACGGTGGCCATCCTCCAGCTCTGCGCCGGCGACAGCTGCCTCAT
CCTGCAGCTGCTCCACGTCGCCGGCGCCCGCCGGGTCCCGCCCCTCGTCGGGGACCTCCT
CGCCGACCCGTCCGTCCGCCTCGTCGGCATCGGCATCGGCGAGAACGCCGCCAAGCTGGC
CGACGGCTACGGCGTGCGGTGCGCGGCGCCGGTGGACCTGGAGGACGTCTGCGACCGCCG
CCTCGGGCGCCTCCCCGGCGCGAGGAGGCTGGGGCTCAAGGGATACGTGAGGGAGGTGCT
GGGGCTGACCATGGAGAAGCCCATGGACGTGACCAGGAGCGACTGGGAGAGGCGCCACCT
CGACGCCGCTCAGGTCCGCTACGCGTGCTCGGCGAGAGGGTCCTCACCAACTAGTCGCCA
ACGCGATCGCCATGCGTGCTTGCAGTGCACTTGGGTCGTCATATGATATGATCATATCTA
TCCTAAATTATAGTATTGTTGCCGTGCTGTTGCAATGATCGATCTAGCTACTAGCAAAAA
GCTACGCATATAGTGTGGCAACGTTATGTGCAATCGGCAGCTATCTTAGTTATCTATCGA
AATATTATTCGATCTACTTATCTGATCTATATATGGCTGC

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)