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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5762#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2137 fasta sequence
[CATGGCGGCGCCGCTCACCGCCGCCGCCGCGCTCCGCCTCGGCCGGGGCCTCAGCCACCGCCGCGCCTTCCTCCTCCGCCGCCGCTACTCCCCCGCGCCCCTTGCTCCTTCCCCGTGCGCGGCTCCTCGATGCCTCTCCAGCGCCGCCCATCCGCCCCCGCCTCCTCCCCGCCGCCTCGCCCGCTCTGGCCCCTCCCGTCCGCTCGCCGCATCCGCCGCCACGGCCGTGTCCGAGGCGCAGACAGATTTAGAGTCTGGTCCGGTGACAGCAAGCAAGGGTCGCATTTACCATGAGACATATGGGTGCCAAATGAATGTAAACGACATGGAGATCGTGCTTTCTATCATGAAAAATGAAGGGTATGATGAAATTGTCCCTGACCCTGAGAGTGCAGAGATAATATTTATCAACACATGTGCAATCCGTGACAACGCAGAGCAGAAAGTCTGGCAGCGACTGAACTACTTTTGGTTCCTGAAAAGGCAATGGAAAGCTAATGTTGCTGCAGGGCGGTCAAGATCTCTGCGGCCTCCAAAGATTGCCGTTCTTGGGTGCATGGCAGAGCGATTGAAGGAGAAAATTCTCGATTCTGATAAGATGGTTGATGTTGTCTGTGGACCTGATGCGTATAGGGACTTGCCTAGGTTGCTGCAGGAAGTTGATTATGGGCAGAAGGGTATCAACACGCTTCTCTCACTCGAGGAGACGTATGCTGACATCACCCCAGTTAGGATCTCTGACAATTCAGTGACCGCATTTGTATCAATTATGAGGGGTTGCAACAATATGTGCTCCTTTTGTATCGTTCCTTTCACTAGAGGTAGGGAAAGGTCCCGTCCAGTGTCCTCAATTGTCCGAGAAGTTGGGGAGCTCTGGAAAGCAGGCGTGAAGGAAGTAATGCTTCTTGGTCAGAACGTAAACAGTTATAACGACACTTCTGAAGTTGAGGAATTAGAACCTGGTAAAAACTGGGAGCTCAGTGAAGGGTTTTCTAGCATGTGCAAGGTGAAGAATATGGGGTTGCGTTTTGCTGATCTCCTGGATCAGTTATCTTTGGAATACCCTGAGATGCGGTTCAGGTTTACCTCTCCGCATCCAAAGGATTACCCAGACGAGCTTCTATATTTAATGCGGGATAGGCACAATGTTTGCAAACTTATTCATATGCCAGCTCAATCAGGCAGCTCAGCAGTGCTGGAACGTATGCGTCGGGGTTATACTAGAGAGGCATACTTGGAGCTTGTGCAGAAAATCCGTAGTATCATTCCAGATGTTGGGTTAAGCAGTGATTTCATAAGTGGTTTTTGTGGAGAGACAGAAGAGGAACATGCTGAGACTCTTACCCTTGTAAGGGCTGTTGGATATGATATGGCCTACATGTTTGCATATAGCATGAGAGAAAAGACTCATGCTCATCGGAATTATGTGGATGATGTCCCCGATGATGTCAAGCAGAGGAGACTTGCAGAGCTAATCAGCACCTTCCGTGAAACTACAGCGAAGATCTACGATTCTCAGGTTGGGACAGTACAGCTAGTTCTAGTCGAGGGACCGAACAAGCGGGCTCCTGAAACAGAGATGATTGGAAAAACCGACAGGGGGCATAGGGTTTCGTTTGCGAGCGTCCCTGTACCGCATACATTTGAAGGTGATGAACTGCGCAAGCCAGTGGTTGGTGACTTCATTGAGGTGAAAATCACCAAGTCATCGACAGCATCATTATCCGGGGATGTAATCGCGCGCACAAGCTTGAGCAAATTCTACAAGAATCATTCATCTGAAGCACATGCTGTTGCGGCTTAAGGATTACTAGTTGAGTTTGTAGCAGGCCACATCTCAACTGAATCAGATCCCCTTGCCATGATCTCTATCTTGAAATGACTGATAAGTTAGACCATACAATGCAATTTAACTGGTGACTCAGTTTTGTGAAGACAACTAATGTGATGTGCTTTTGGCATTTGAAGCCAAAACAATCACCAGCATTTAGTCTGCTAGTCATGTGAAGCAATGCCTCTTCTCTTATGAAGTCTGTATTATCATGTAAAGAGTTTAAGCACTACTGGCCAGCAACATTTTTTTTTTCTTTTGCAAGTTACTGCAACTCGGCAGCGTGAGGTTTATTTATTTATTTTT]
[+] EMBL AK066319 [CATGGCGGCGCCGCTCACCGCCGCCGCCGCGCTCCGCCTCGGCCGGGGCCTCAGCCACCGCCGCGCCTTCCTCCTCCGCCGCCGCTACTCCCCCGCGCCCCTTGCTCCTTCCCCGTGCGCGGCTCCTCGATGCCTCTCCAGCGCCGCCCATCCGCCCCCGCCTCCTCCCCGCCGCCTCGCCCGCTCTGGCCCCTCCCGTCCGCTCGCCGCATCCGCCGCCACGGCCGTGTCCGAGGCGCAGACAGATTTAGAGTCTGGTCCGGTGACAGCAAGCAAGGGTCGCATTTACCATGAGACATATGGGTGCCAAATGAATGTAAACGACATGGAGATCGTGCTTTCTATCATGAAAAATGAAGGGTATGATGAAATTGTCCCTGACCCTGAGAGTGCAGAGATAATATTTATCAACACATGTGCAATCCGTGACAACGCAGAGCAGAAAGTCTGGCAGCGACTGAACTACTTTTGGTTCCTGAAAAGGCAATGGAAAGCTAATGTTGCTGCAGGGCGGTCAAGATCTCTGCGGCCTCCAAAGATTGCCGTTCTTGGGTGCATGGCAGAGCGATTGAAGGAGAAAATTCTCGATTCTGATAAGATGGTTGATGTTGTCTGTGGACCTGATGCGTATAGGGACTTGCCTAGGTTGCTGCAGGAAGTTGATTATGGGCAGAAGGGTATCAACACGCTTCTCTCACTCGAGGAGACGTATGCTGACATCACCCCAGTTAGGATCTCTGACAATTCAGTGACCGCATTTGTATCAATTATGAGGGGTTGCAACAATATGTGCTCCTTTTGTATCGTTCCTTTCACTAGAGGTAGGGAAAGGTCCCGTCCAGTGTCCTCAATTGTCCGAGAAGTTGGGGAGCTCTGGAAAGCAGGCGTGAAGGAAGTAATGCTTCTTGGTCAGAACGTAAACAGTTATAACGACACTTCTGAAGTTGAGGAATTAGAACCTGGTAAAAACTGGGAGCTCAGTGAAGGGTTTTCTAGCATGTGCAAGGTGAAGAATATGGGGTTGCGTTTTGCTGATCTCCTGGATCAGTTATCTTTGGAATACCCTGAGATGCGGTTCAGGTTTACCTCTCCGCATCCAAAGGATTACCCAGACGAGCTTCTATATTTAATGCGGGATAGGCACAATGTTTGCAAACTTATTCATATGCCAGCTCAATCAGGCAGCTCAGCAGTGCTGGAACGTATGCGTCGGGGTTATACTAGAGAGGCATACTTGGAGCTTGTGCAGAAAATCCGTAGTATCATTCCAGATGTTGGGTTAAGCAGTGATTTCATAAGTGGTTTTTGTGGAGAGACAGAAGAGGAACATGCTGAGACTCTTACCCTTGTAAGGGCTGTTGGATATGATATGGCCTACATGTTTGCATATAGCATGAGAGAAAAGACTCATGCTCATCGGAATTATGTGGATGATGTCCCCGATGATGTCAAGCAGAGGAGACTTGCAGAGCTAATCAGCACCTTCCGTGAAACTACAGCGAAGATCTACGATTCTCAGGTTGGGACAGTACAGCTAGTTCTAGTCGAGGGACCGAACAAGCGGGCTCCTGAAACAGAGATGATTGGAAAAACCGACAGGGGGCATAGGGTTTCGTTTGCGAGCGTCCCTGTACCGCATACATTTGAAGGTGATGAACTGCGCAAGCCAGTGGTTGGTGACTTCATTGAGGTGAAAATCACCAAGTCATCGACAGCATCATTATCCGGGGATGTAATCGCGCGCACAAGCTTGAGCAAATTCTACAAGAATCATTCATCTGAAGCACATGCTGTTGCGGCTTAAGGATTACTAGTTGAGTTTGTAGCAGGCCACATCTCAACTGAATCAGATCCCCTTGCCATGATCTCTATCTTGAAATGACTGATAAGTTAGACCATACAATGCAATTTAACTGGTGACTCAGTTTTGTGAAGACAACTAATGTGATGTGCTTTTGGCATTTGAAGCCAAAACAATCACCAGCATTTAGTCTGCTAGTCATGTGAAGCAATGCCTCTTCTCTTATGAAGTCTGTATTATCATGTAAAGAGTTTAAGCACTACTGGCCAGCAACATTTTTTTTTTCTTTTGCAAGTTACTGCAACTCGGCAGCGTGAGGTTTATTTATTTATTTTT]
[+] EMBL CB629685 [ ACCGCCGCCGCCGCGCTCCGCCTCGGCCGGGGCCTCAGCCACCGCCGCGCCTTCCTCCTCCGCCGCCGCTACTCCCCCCCGCCCCTTGCTCCTTCCCCGTGCGCGGCTCCTCGATGCCTCTCCAGCGCCGCCCATCCGCCCCCGCCTCCTCCACGCCGCCTCGCCCGCTCTGGCCCCTCCCGTCCGCTCGCCGCATCCGTCGCCACGGCCGTGTCCGAGGCGCAGACAGATTTAGAGTCTGGTCCGGTGACAGCAAGCAAGGGTCGCATTTACCATGAGACATATGGGTGCCAAATGAATGTAAACGACATGGAGATCGTGTTTTCTATCATGAAAAATGAAGGGTATGATGAAATTGTCCCTGACCCTGAGAGTGCAGAGATAATATTTATCAACACATGTGCAATCCGTGACAACGCAGAGCAGAAAGTCTGGCAGCGACTGAACTACTTTTGGTTCCTGAAAAGGCAATGGAAAGCTAATGTTGCTGCAGGGCGGTCAAGATCTCTGCGGCCTCCAAAGATTGCCGTTCTTGGGTGCATGGCGGAGCGATTGAAGGAGAAAATTCTCGATTCTGATAAGATGGTTGATGTTGTCTGTGGACCTGATGCGTATAGGGACTTGCCTAGGTTGCTGCAGGAAGTTGATTATGGGCAGAAGGGTATCAACACGCTTCTCTCACTCGAGGAGACGT ]
consensusID : consensus_5762#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 731 fasta sequence
[AGCATGAGAGAAAAGACTCATGCTCATCGGAATTATGTGGATGATGTCCCCGATGATGTCAAGCAGAGGAGACTTGCAGAGCTAATCAGCCCCTTCCGTGAAACTCCAGCGAAGATTTACGATTCTCAGGTTGGGACAGTACAGCTAGTTTTAGTCGAGGGACCGAACAAGCGGGCTCCTGAAACAGAGATGATTGGAAAAACCGATAGGGGGCATAGGGTTTCGTTTGCGAGCGTCCCTGTCCCGCATACATTTGAAGGTGATGAACTGCGCAAGCCAGTGGTTGGTGACTTCATTGAGGTGAAAATCACCAAGTCATGGACAGCATCATTATCCGGGGATGTAATCGCGCGCACAAGCTTGAGCAAGTTTTCCAAGAATCATTCATTTGAAGCACATGCTGTTGCGGCTTAAGGACTATTAGTTGAGTTTGTAGCAGGCCACATTTCAACTGAATCAGATCCCCTTGCCATGATTTTTATCTTGAAATGACTGATAAGTTAGCCCATACAATGCAATTTAACTGGTGACTCAGTTTTGTGAAGGCAATTAATGTGATGTGCTTTTGGCATTTGAAGCCAAAACAATCACCAGCATTTAGTTTGTTAGTCAGGGGAAGCAATGCCTTTTTTCTTATGAAGTCTGTATTATCATGTAAAGAGTTTAAGCATTACTGGCCACCAACAGTTATTTTTTCTTTTGCAAAACAAAAAAAAAAAAAAAAAAAAGGA]
[-] EMBL CB629686 [AGCATGAGAGAAAAGACTCATGCTCATCGGAATTATGTGGATGATGTCCCCGATGATGTCAAGCAGAGGAGACTTGCAGAGCTAATCAGCCCCTTCCGTGAAACTCCAGCGAAGATTTACGATTCTCAGGTTGGGACAGTACAGCTAGTTTTAGTCGAGGGACCGAACAAGCGGGCTCCTGAAACAGAGATGATTGGAAAAACCGATAGGGGGCATAGGGTTTCGTTTGCGAGCGTCCCTGTCCCGCATACATTTGAAGGTGATGAACTGCGCAAGCCAGTGGTTGGTGACTTCATTGAGGTGAAAATCACCAAGTCATGGACAGCATCATTATCCGGGGATGTAATCGCGCGCACAAGCTTGAGCAAGTTTTCCAAGAATCATTCATTTGAAGCACATGCTGTTGCGGCTTAAGGACTATTAGTTGAGTTTGTAGCAGGCCACATTTCAACTGAATCAGATCCCCTTGCCATGATTTTTATCTTGAAATGACTGATAAGTTAGCCCATACAATGCAATTTAACTGGTGACTCAGTTTTGTGAAGGCAATTAATGTGATGTGCTTTTGGCATTTGAAGCCAAAACAATCACCAGCATTTAGTTTGTTAGTCAGGGGAAGCAATGCCTTTTTTCTTATGAAGTCTGTATTATCATGTAAAGAGTTTAAGCATTACTGGCCACCAACAGTTATTTTTTCTTTTGCAAAACAAAAAAAAAAAAAAAAAAAAGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5762#0 CATGGCGGCGCCGCTCACCGCCGCCGCCGCGCTCCGCCTCGGCCGGGGCCTCAGCCACCG 60
consensus_5762#1 ------------------------------------------------------------
consensus_5762#0 CCGCGCCTTCCTCCTCCGCCGCCGCTACTCCCCCGCGCCCCTTGCTCCTTCCCCGTGCGC 120
consensus_5762#1 ------------------------------------------------------------
consensus_5762#0 GGCTCCTCGATGCCTCTCCAGCGCCGCCCATCCGCCCCCGCCTCCTCCCCGCCGCCTCGC 180
consensus_5762#1 ------------------------------------------------------------
consensus_5762#0 CCGCTCTGGCCCCTCCCGTCCGCTCGCCGCATCCGCCGCCACGGCCGTGTCCGAGGCGCA 240
consensus_5762#1 ------------------------------------------------------------
consensus_5762#0 GACAGATTTAGAGTCTGGTCCGGTGACAGCAAGCAAGGGTCGCATTTACCATGAGACATA 300
consensus_5762#1 ------------------------------------------------------------
consensus_5762#0 TGGGTGCCAAATGAATGTAAACGACATGGAGATCGTGCTTTCTATCATGAAAAATGAAGG 360
consensus_5762#1 ------------------------------------------------------------
consensus_5762#0 GTATGATGAAATTGTCCCTGACCCTGAGAGTGCAGAGATAATATTTATCAACACATGTGC 420
consensus_5762#1 ------------------------------------------------------------
consensus_5762#0 AATCCGTGACAACGCAGAGCAGAAAGTCTGGCAGCGACTGAACTACTTTTGGTTCCTGAA 480
consensus_5762#1 ------------------------------------------------------------
consensus_5762#0 AAGGCAATGGAAAGCTAATGTTGCTGCAGGGCGGTCAAGATCTCTGCGGCCTCCAAAGAT 540
consensus_5762#1 ------------------------------------------------------------
consensus_5762#0 TGCCGTTCTTGGGTGCATGGCAGAGCGATTGAAGGAGAAAATTCTCGATTCTGATAAGAT 600
consensus_5762#1 ------------------------------------------------------------
consensus_5762#0 GGTTGATGTTGTCTGTGGACCTGATGCGTATAGGGACTTGCCTAGGTTGCTGCAGGAAGT 660
consensus_5762#1 ------------------------------------------------------------
consensus_5762#0 TGATTATGGGCAGAAGGGTATCAACACGCTTCTCTCACTCGAGGAGACGTATGCTGACAT 720
consensus_5762#1 ------------------------------------------------------------
consensus_5762#0 CACCCCAGTTAGGATCTCTGACAATTCAGTGACCGCATTTGTATCAATTATGAGGGGTTG 780
consensus_5762#1 ------------------------------------------------------------
consensus_5762#0 CAACAATATGTGCTCCTTTTGTATCGTTCCTTTCACTAGAGGTAGGGAAAGGTCCCGTCC 840
consensus_5762#1 ------------------------------------------------------------
consensus_5762#0 AGTGTCCTCAATTGTCCGAGAAGTTGGGGAGCTCTGGAAAGCAGGCGTGAAGGAAGTAAT 900
consensus_5762#1 ------------------------------------------------------------
consensus_5762#0 GCTTCTTGGTCAGAACGTAAACAGTTATAACGACACTTCTGAAGTTGAGGAATTAGAACC 960
consensus_5762#1 ------------------------------------------------------------
consensus_5762#0 TGGTAAAAACTGGGAGCTCAGTGAAGGGTTTTCTAGCATGTGCAAGGTGAAGAATATGGG 1020
consensus_5762#1 ------------------------------------------------------------
consensus_5762#0 GTTGCGTTTTGCTGATCTCCTGGATCAGTTATCTTTGGAATACCCTGAGATGCGGTTCAG 1080
consensus_5762#1 ------------------------------------------------------------
consensus_5762#0 GTTTACCTCTCCGCATCCAAAGGATTACCCAGACGAGCTTCTATATTTAATGCGGGATAG 1140
consensus_5762#1 ------------------------------------------------------------
consensus_5762#0 GCACAATGTTTGCAAACTTATTCATATGCCAGCTCAATCAGGCAGCTCAGCAGTGCTGGA 1200
consensus_5762#1 ------------------------------------------------------------
consensus_5762#0 ACGTATGCGTCGGGGTTATACTAGAGAGGCATACTTGGAGCTTGTGCAGAAAATCCGTAG 1260
consensus_5762#1 ------------------------------------------------------------
consensus_5762#0 TATCATTCCAGATGTTGGGTTAAGCAGTGATTTCATAAGTGGTTTTTGTGGAGAGACAGA 1320
consensus_5762#1 ------------------------------------------------------------
consensus_5762#0 AGAGGAACATGCTGAGACTCTTACCCTTGTAAGGGCTGTTGGATATGATATGGCCTACAT 1380
consensus_5762#1 ------------------------------------------------------------
consensus_5762#0 GTTTGCATATAGCATGAGAGAAAAGACTCATGCTCATCGGAATTATGTGGATGATGTCCC 1440
consensus_5762#1 ----------AGCATGAGAGAAAAGACTCATGCTCATCGGAATTATGTGGATGATGTCCC 50
**************************************************
consensus_5762#0 CGATGATGTCAAGCAGAGGAGACTTGCAGAGCTAATCAGCACCTTCCGTGAAACTACAGC 1500
consensus_5762#1 CGATGATGTCAAGCAGAGGAGACTTGCAGAGCTAATCAGCCCCTTCCGTGAAACTCCAGC 110
**************************************** ************** ****
consensus_5762#0 GAAGATCTACGATTCTCAGGTTGGGACAGTACAGCTAGTTCTAGTCGAGGGACCGAACAA 1560
consensus_5762#1 GAAGATTTACGATTCTCAGGTTGGGACAGTACAGCTAGTTTTAGTCGAGGGACCGAACAA 170
****** ********************************* *******************
consensus_5762#0 GCGGGCTCCTGAAACAGAGATGATTGGAAAAACCGACAGGGGGCATAGGGTTTCGTTTGC 1620
consensus_5762#1 GCGGGCTCCTGAAACAGAGATGATTGGAAAAACCGATAGGGGGCATAGGGTTTCGTTTGC 230
************************************ ***********************
consensus_5762#0 GAGCGTCCCTGTACCGCATACATTTGAAGGTGATGAACTGCGCAAGCCAGTGGTTGGTGA 1680
consensus_5762#1 GAGCGTCCCTGTCCCGCATACATTTGAAGGTGATGAACTGCGCAAGCCAGTGGTTGGTGA 290
************ ***********************************************
consensus_5762#0 CTTCATTGAGGTGAAAATCACCAAGTCATCGACAGCATCATTATCCGGGGATGTAATCGC 1740
consensus_5762#1 CTTCATTGAGGTGAAAATCACCAAGTCATGGACAGCATCATTATCCGGGGATGTAATCGC 350
***************************** ******************************
consensus_5762#0 GCGCACAAGCTTGAGCAAATTCTACAAGAATCATTCATCTGAAGCACATGCTGTTGCGGC 1800
consensus_5762#1 GCGCACAAGCTTGAGCAAGTTTTCCAAGAATCATTCATTTGAAGCACATGCTGTTGCGGC 410
****************** ** * ************** *********************
consensus_5762#0 TTAAGGATTACTAGTTGAGTTTGTAGCAGGCCACATCTCAACTGAATCAGATCCCCTTGC 1860
consensus_5762#1 TTAAGGACTATTAGTTGAGTTTGTAGCAGGCCACATTTCAACTGAATCAGATCCCCTTGC 470
******* ** ************************* ***********************
consensus_5762#0 CATGATCTCTATCTTGAAATGACTGATAAGTTAGACCATACAATGCAATTTAACTGGTGA 1920
consensus_5762#1 CATGATTTTTATCTTGAAATGACTGATAAGTTAGCCCATACAATGCAATTTAACTGGTGA 530
****** * ************************* *************************
consensus_5762#0 CTCAGTTTTGTGAAGACAACTAATGTGATGTGCTTTTGGCATTTGAAGCCAAAACAATCA 1980
consensus_5762#1 CTCAGTTTTGTGAAGGCAATTAATGTGATGTGCTTTTGGCATTTGAAGCCAAAACAATCA 590
*************** *** ****************************************
consensus_5762#0 CCAGCATTTAGTCTGCTAGTCATGTGAAGCAATGCCTCTTCTCTTATGAAGTCTGTATTA 2040
consensus_5762#1 CCAGCATTTAGTTTGTTAGTCAGGGGAAGCAATGCCTTTTTTCTTATGAAGTCTGTATTA 650
************ ** ****** * ************ ** *******************
consensus_5762#0 TCATGTAAAGAGTTTAAGCACTACTGGCCAGCAACATTTTTTTTTTCTTTTGCAAGTTAC 2100
consensus_5762#1 TCATGTAAAGAGTTTAAGCATTACTGGCCACCAACAGTTATTTTTTCTTTTGCAAAACAA 710
******************** ********* ***** ** *************** *
consensus_5762#0 TGCAACTCGGCAGCGTGAGGTTTATTTATTTATTTTT 2137
consensus_5762#1 AAAAAAAAAAAAAAAAAAGGA---------------- 731
** * ***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||