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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5764#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2215 fasta sequence
[TGTCCGGATTCTTCTTCTTCTTCTTCTTCCCTCGTCATCCGGGAACGCGGCGAGGAGGCGGCCTGGCTACAGGACGTCTTCTTCTTCCCTCTCGTCTTCCCCCTCTTCTCCAACCTTCTCTTCACGGGCCAAAAAAAATCTTTGGTAATTGGTACGGTCCGCCATGCGGGCGGTGCCTTGTCGAGCTCGGAAGACGGCATGAGTGCTGTAATATTGGTTGGATTCAGTTATGAAATTAAGTAGTACTGAATAATGAGATTCGGGTTGGATCAAATTTATTCGAACGGGATCGGTTTTGTTCTTTTGTTTTTGGAAAGAACCGAATAGTTTCTTTTTAACTATTTCCTCATTTTAAAGAACGGTATTATGCGATTCAAATCAAATCTACGCAAGTCAAAATTTCAACAACCAGTTGCGTCAACATGCTTTTTGTCTGGTTAAAAGAACTGAAAGTACGTACTATGCTTTTTCTCTGCTTTGATGTGTGATCTTAGTCCTTTTGTTCCTTTCTTGTTATTCTCTGAATTTCTCCTGTCCGTATTCTAAATTGGAAAATTGCATTGATCATGAGCAGTTTGCGTTGTGTGTCACAAAATCATGAGGATTCAATTAATTACTTGTTCATGAGGGTGGTGTATATGCCATTGTGATTTAGCTTTCTGAGGATTCAATTAATCTCTCATTTAGGGGATAAGAGGATAGATTCTGAAAATATATAAGATGGCACCTGGATGTCATTGTGATTTAGCTTTTAATTAATCTCTCATTTAGGGGATAAGTGGATAGATTCTGGAAATATATAAGATGACACCTTGATGTCATTGTGAAGCTTTAACATTTTTTTTAAGGTATTTAGCTTTTACTTCGATCTGAATTTCTAAACCCACCATTTTTTTCGTTTGTGTTCAACCAGAGATGCGGCATTGGCTGGACTTCGTGTGGCAGAGCGTGCCTATTGGAAGGAATTTGTGGACAGAGTATTGAAAGATACCAGCAGCATTGATATAACTGCGTCAAATATAGCTGTTCCCACAAGGCTACCTGTCGAGCTGCAAGTCCTGATCAAGGTTATGATCCACCAGATTCTTAACACTCAGCCTGGAGCAATCCCTCCACTAGCATTTCATTGGTGTTGCAATCAGCTTCTTCAGCATTTGGTGAATTCAGTAAGAACCCAAGGACAGCCAACTGTTGAACCAAATGTACATGGACATCAACGTTGCAGGGGTGCAGGTTGGTCATCGGGGATTCCCGAACGATTGGCCGATCGAAATGTTTCAGAAGATGGAGGTATTGGAGGAGTTGATTCGAGGAGGAACATTAGAGAGATGAATGGTAAAACTAAAGAGACAAATGCAAGTCGTGAGTCACCCCGAATCCTCAAGCCTACTGGTGAGCCAAACCCATCCACTGGTGGCATACGGATTCAGAATAATCGGCAAGAGCAACCTGCAGAAATGACCATTTTCCATCCATGGAAAAACATTACTGATAGAACATCAGCTTATGAGCTAAGCCATATTGACAACTTGGTTAATCATGAAGATGATGAGACAAAGAGGCAGAAAGAACAGAGTGTTCACATCACTCTGTTGTATGAGATCAACCTCATCAACGAAGAGCTTTTCGATACCGTGATCAGTATCACCGGTCACAAACATGGTGGGACAGTGATCAAATTCAGCTACAATGCAGTGTCTCTTGCACAAGACATGGAGCTACCATTTGCAGCATACGGAACGTCTCCTCTCAAGCCGGCGAAGCTATTTGTCCCAGCTGATTATCCTCGAAGCTCCCCGGTGTACGAAGATGGTGATGAACAGCACCAGGGAATGTACAGCGTGATTTCAGGCATGGTTGACAAGGTGTTCCAGCGTGCCCTGCGTAAACTCCCGGTGCCAATGTCGATCAGGGACATGGCCCGGCAGTGGGGCATCTCCGTGCGAACGGTCACCAACGGTGGAGGAACGTTCAGCTCCGGGTATGGCCAGTGGGAGAGTTGCACCGATGAGTTTGCAAGTCCATAGTCCATGGATAGACCCATGAAGTTTTGCAGGAACAAGTGATATGAAGAATAATGCTGATCTGCTGTTTTGCTGTAGGGCAGATGCAGAATCCAGTGTGAGTGTTGTGAGAGAATATTTATATTTTTGTTATGCATTAAGAGGCTGTGTGGATCATCTGTTTTTGATTAAACCGGTTTTGCTTAAAAAAT]
[+] EMBL AK099682 [TGTCCGGATTCTTCTTCTTCTTCTTCTTCCCTCGTCATCCGGGAACGCGGCGAGGAGGCGGCCTGGCTACAGGACGTCTTCTTCTTCCCTCTCGTCTTCCCCCTCTTCTCCAACCTTCTCTTCACGGGCCAAAAAAAATCTTTGGTAATTGGTACGGTCCGCCATGCGGGCGGTGCCTTGTCGAGCTCGGAAGACGGCATGAGTGCTGTAATATTGGTTGGATTCAGTTATGAAATTAAGTAGTACTGAATAATGAGATTCGGGTTGGATCAAATTTATTCGAACGGGATCGGTTTTGTTCTTTTGTTTTTGGAAAGAACCGAATAGTTTCTTTTTAACTATTTCCTCATTTTAAAGAACGGTATTATGCGATTCAAATCAAATCTACGCAAGTCAAAATTTCAACAACCAGTTGCGTCAACATGCTTTTTGTCTGGTTAAAAGAACTGAAAGTACGTACTATGCTTTTTCTCTGCTTTGATGTGTGATCTTAGTCCTTTTGTTCCTTTCTTGTTATTCTCTGAATTTCTCCTGTCCGTATTCTAAATTGGAAAATTGCATTGATCATGAGCAGTTTGCGTTGTGTGTCACAAAATCATGAGGATTCAATTAATTACTTGTTCATGAGGGTGGTGTATATGCCATTGTGATTTAGCTTTCTGAGGATTCAATTAATCTCTCATTTAGGGGATAAGAGGATAGATTCTGAAAATATATAAGATGGCACCTGGATGTCATTGTGATTTAGCTTTTAATTAATCTCTCATTTAGGGGATAAGTGGATAGATTCTGGAAATATATAAGATGACACCTTGATGTCATTGTGAAGCTTTAACATTTTTTTTAAGGTATTTAGCTTTTACTTCGATCTGAATTTCTAAACCCACCATTTTTTTCGTTTGTGTTCAACCAGAGATGCGGCATTGGCTGGACTTCGTGTGGCAGAGCGTGCCTATTGGAAGGAATTTGTGGACAGAGTATTGAAAGATACCAGCAGCATTGATATAACTGCGTCAAATATAGCTGTTCCCACAAGGCTACCTGTCGAGCTGCAAGTCCTGATCAAGGTTATGATCCACCAGATTCTTAACACTCAGCCTGGAGCAATCCCTCCACTAGCATTTCATTGGTGTTGCAATCAGCTTCTTCAGCATTTGGTGAATTCAGTAAGAACCCAAGGACAGCCAACTGTTGAACCAAATGTACATGGACATCAACGTTGCAGGGGTGCAGGTTGGTCATCGGGGATTCCCGAACGATTGGCCGATCGAAATGTTTCAGAAGATGGAGGTATTGGAGGAGTTGATTCGAGGAGGAACATTAGAGAGATGAATGGTAAAACTAAAGAGACAAATGCAAGTCGTGAGTCACCCCGAATCCTCAAGCCTACTGGTGAGCCAAACCCATCCACTGGTGGCATACGGATTCAGAATAATCGGCAAGAGCAACCTGCAGAAATGACCATTTTCCATCCATGGAAAAACATTACTGATAGAACATCAGCTTATGAGCTAAGCCATATTGACAACTTGGTTAATCATGAAGATGATGAGACAAAGAGGCAGAAAGAACAGAGTGTTCACATCACTCTGTTGTATGAGATCAACCTCATCAACGAAGAGCTTTTCGATACCGTGATCAGTATCACCGGTCACAAACATGGTGGGACAGTGATCAAATTCAGCTACAATGCAGTGTCTCTTGCACAAGACATGGAGCTACCATTTGCAGCATACGGAACGTCTCCTCTCAAGCCGGCGAAGCTATTTGTCCCAGCTGATTATCCTCGAAGCTCCCCGGTGTACGAAGATGGTGATGAACAGCACCAGGGAATGTACAGCGTGATTTCAGGCATGGTTGACAAGGTGTTCCAGCGTGCCCTGCGTAAACTCCCGGTGCCAATGTCGATCAGGGACATGGCCCGGCAGTGGGGCATCTCCGTGCGAACGGTCACCAACGGTGGAGGAACGTTCAGCTCCGGGTATGGCCAGTGGGAGAGTTGCACCGATGAGTTTGCAAGTCCATAGTCCATGGATAGACCCATGAAGTTTTGCAGGAACAAGTGATATGAAGAATAATGCTGATCTGCTGTTTTGCTGTAGGGCAGATGCAGAATCCAGTGTGAGTGTTGTGAGAGAATATTTATATTTTTGTTATGCATTAAGAGGCTGTGTGGATCATCTGTTTTTGATTAAACCGGTTTTGCTTAAAAAAT]
[+] EMBL AK108456 [ AAAGAGACAAATGCAAGTCGTGAGTCACCCCGAATCCTCAAGCCTACTGGTGAGCCAAACCCATCCACTGGTGGCATACGGATTCAGAATAATCGGCAAGAGCAACCTGCAGAAATGACCATTTTCCATCCATGGAAAAACATTACTGATAGAACATCAGCTTATGAGCTAAGCCATATTGACAACTTGGTTAATCATGAAGATGATGAGACAAAGAGGCAGAAAGAACAGAGTGTTCACATCACTCTGTTGTATGAGATCAACCTCATCAACGAAGAGCTTTTCGATACCGTGATCAGTATCACCGGTCACAAACATGGTGGGACAGTGATCAAATTCAGCTACAATGCAGTGTCTCTTGCACAAGACATGGAGCTACCATTTGCAGCATACGGAACGTCTCCTCTCAAGCCGGCGAAGCTATTTGTCCCAGCTGATTATCCTCGAAGCTCCCCGGTGTACGAAGATGGTGATGAACAGCACCAGGGAATGTACAGCGTGATTTCAGGCATGGTTGACAAGGTGTTCCAGCGTGCCCTGCGTAAACTCCCGGTGCCAATGTCGATCAGGGACATGGCCCGGCAGTGGGGCATCTCCGTGCGAACGGTCACCAACGGTGGAGGAACGTTCGGCTCCGGGTATGGCCAGTGGGAGAGTTGCACCGATGAGTTTGCAAGTCCATAGTCCATGGATAGACCCATGAAGTTTTGCAGGAACAAGTGATATGAAGAATAATGCTGATCTGCTGTTTTGCTGTAGGGCAGATGCAGAATCCAGTGTGAGTGTTGTGAGAGAATATTTATATTTTTGTTATGCATTAAGAGGCTGTGTGGATCATCT ]
consensusID : consensus_5764#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence
[AAAGAACAGAGTGTTCCCATCACTCTGTTGTATGAGATCAACCCTCATCAACGAAGAGCTTTTCGATTCCGTGATCAGTATCACCGGTCACAAACATGGTGGGGCAGTGATCAAATTTAGGTTCAATGCAGTGTCTTTTGCCCGAGACAAGGAGCTTCCCTTTGCAGCATTCGGAACGTTTCCTCTCAAGCCGGGGAAGCTATTTGTTCCAACTGATTATCCTTGAAGCTTCCCGGTGTTCGAAGATGGTTATTAACAGCCCCCGGGAATGTTCAGCGTGATTTCAGGCATGGTTGACAAGGTGTTCCAGCGTGCCCTGGGTTAACTCCCGGTGCCAATGTCGATCAGGGACATGGCCCGGCAATGGGGCATTTCCGTGCGAACGGTCCCCAACGGTGGAGGAACGTTCAGCTCCGGGTATGGCCAGTGGGAAAGTTGCCCCCATGAGTTTGCAAGTCCATTGTCCCTGGATAGACCCCTGAAGTTTTGCCGGAACCAATGATTTGAAGAATAATGCTGATTTGCTGTTTTGCCGTAGGGCAGATGCAAAATCCCGTGTGAGTGTTGTGAAAAAATATTTATATTTTTGTTTTGCCTTAAAAGGCTGGGTGGATTATCTGTTTTTGATTAAACCGGTTTTGCTTAAAAAATATTTTTTTCTTCGGTTGTGGATTGTGGTTAAAAAAAAAAAAAAAA]
[-] EMBL CA762033 [AAAGAACAGAGTGTTCCCATCACTCTGTTGTATGAGATCAACCCTCATCAACGAAGAGCTTTTCGATTCCGTGATCAGTATCACCGGTCACAAACATGGTGGGGCAGTGATCAAATTTAGGTTCAATGCAGTGTCTTTTGCCCGAGACAAGGAGCTTCCCTTTGCAGCATTCGGAACGTTTCCTCTCAAGCCGGGGAAGCTATTTGTTCCAACTGATTATCCTTGAAGCTTCCCGGTGTTCGAAGATGGTTATTAACAGCCCCCGGGAATGTTCAGCGTGATTTCAGGCATGGTTGACAAGGTGTTCCAGCGTGCCCTGGGTTAACTCCCGGTGCCAATGTCGATCAGGGACATGGCCCGGCAATGGGGCATTTCCGTGCGAACGGTCCCCAACGGTGGAGGAACGTTCAGCTCCGGGTATGGCCAGTGGGAAAGTTGCCCCCATGAGTTTGCAAGTCCATTGTCCCTGGATAGACCCCTGAAGTTTTGCCGGAACCAATGATTTGAAGAATAATGCTGATTTGCTGTTTTGCCGTAGGGCAGATGCAAAATCCCGTGTGAGTGTTGTGAAAAAATATTTATATTTTTGTTTTGCCTTAAAAGGCTGGGTGGATTATCTGTTTTTGATTAAACCGGTTTTGCTTAAAAAATATTTTTTTCTTCGGTTGTGGATTGTGGTTAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5764#0 TGTCCGGATTCTTCTTCTTCTTCTTCTTCCCTCGTCATCCGGGAACGCGGCGAGGAGGCG 60
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 GCCTGGCTACAGGACGTCTTCTTCTTCCCTCTCGTCTTCCCCCTCTTCTCCAACCTTCTC 120
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 TTCACGGGCCAAAAAAAATCTTTGGTAATTGGTACGGTCCGCCATGCGGGCGGTGCCTTG 180
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 TCGAGCTCGGAAGACGGCATGAGTGCTGTAATATTGGTTGGATTCAGTTATGAAATTAAG 240
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 TAGTACTGAATAATGAGATTCGGGTTGGATCAAATTTATTCGAACGGGATCGGTTTTGTT 300
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 CTTTTGTTTTTGGAAAGAACCGAATAGTTTCTTTTTAACTATTTCCTCATTTTAAAGAAC 360
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 GGTATTATGCGATTCAAATCAAATCTACGCAAGTCAAAATTTCAACAACCAGTTGCGTCA 420
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 ACATGCTTTTTGTCTGGTTAAAAGAACTGAAAGTACGTACTATGCTTTTTCTCTGCTTTG 480
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 ATGTGTGATCTTAGTCCTTTTGTTCCTTTCTTGTTATTCTCTGAATTTCTCCTGTCCGTA 540
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 TTCTAAATTGGAAAATTGCATTGATCATGAGCAGTTTGCGTTGTGTGTCACAAAATCATG 600
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 AGGATTCAATTAATTACTTGTTCATGAGGGTGGTGTATATGCCATTGTGATTTAGCTTTC 660
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 TGAGGATTCAATTAATCTCTCATTTAGGGGATAAGAGGATAGATTCTGAAAATATATAAG 720
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 ATGGCACCTGGATGTCATTGTGATTTAGCTTTTAATTAATCTCTCATTTAGGGGATAAGT 780
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 GGATAGATTCTGGAAATATATAAGATGACACCTTGATGTCATTGTGAAGCTTTAACATTT 840
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 TTTTTAAGGTATTTAGCTTTTACTTCGATCTGAATTTCTAAACCCACCATTTTTTTCGTT 900
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 TGTGTTCAACCAGAGATGCGGCATTGGCTGGACTTCGTGTGGCAGAGCGTGCCTATTGGA 960
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 AGGAATTTGTGGACAGAGTATTGAAAGATACCAGCAGCATTGATATAACTGCGTCAAATA 1020
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 TAGCTGTTCCCACAAGGCTACCTGTCGAGCTGCAAGTCCTGATCAAGGTTATGATCCACC 1080
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 AGATTCTTAACACTCAGCCTGGAGCAATCCCTCCACTAGCATTTCATTGGTGTTGCAATC 1140
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 AGCTTCTTCAGCATTTGGTGAATTCAGTAAGAACCCAAGGACAGCCAACTGTTGAACCAA 1200
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 ATGTACATGGACATCAACGTTGCAGGGGTGCAGGTTGGTCATCGGGGATTCCCGAACGAT 1260
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 TGGCCGATCGAAATGTTTCAGAAGATGGAGGTATTGGAGGAGTTGATTCGAGGAGGAACA 1320
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 TTAGAGAGATGAATGGTAAAACTAAAGAGACAAATGCAAGTCGTGAGTCACCCCGAATCC 1380
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 TCAAGCCTACTGGTGAGCCAAACCCATCCACTGGTGGCATACGGATTCAGAATAATCGGC 1440
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 AAGAGCAACCTGCAGAAATGACCATTTTCCATCCATGGAAAAACATTACTGATAGAACAT 1500
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 CAGCTTATGAGCTAAGCCATATTGACAACTTGGTTAATCATGAAGATGATGAGACAAAGA 1560
consensus_5764#1 ------------------------------------------------------------
consensus_5764#0 GGCAGAAAGAACAGAGTGTTCACATCACTCTGTTGTATGAGATCAACC-TCATCAACGAA 1619
consensus_5764#1 -----AAAGAACAGAGTGTTCCCATCACTCTGTTGTATGAGATCAACCCTCATCAACGAA 55
**************** ************************** ***********
consensus_5764#0 GAGCTTTTCGATACCGTGATCAGTATCACCGGTCACAAACATGGTGGGACAGTGATCAAA 1679
consensus_5764#1 GAGCTTTTCGATTCCGTGATCAGTATCACCGGTCACAAACATGGTGGGGCAGTGATCAAA 115
************ *********************************** ***********
consensus_5764#0 TTCAGCTACAATGCAGTGTCTCTTGCACAAGACATGGAGCTACCATTTGCAGCATACGGA 1739
consensus_5764#1 TTTAGGTTCAATGCAGTGTCTTTTGCCCGAGACAAGGAGCTTCCCTTTGCAGCATTCGGA 175
** ** * ************* **** * ***** ****** ** ********** ****
consensus_5764#0 ACGTCTCCTCTCAAGCCGGCGAAGCTATTTGTCCCAGCTGATTATCCTCGAAGCTCCCCG 1799
consensus_5764#1 ACGTTTCCTCTCAAGCCGGGGAAGCTATTTGTTCCAACTGATTATCCTTGAAGCTTCCCG 235
**** ************** ************ *** *********** ****** ****
consensus_5764#0 GTGTACGAAGATGGTGATGAACAGCACCAGGGAATGTACAGCGTGATTTCAGGCATGGTT 1859
consensus_5764#1 GTGTTCGAAGATGGTTATTAACAGCCCCCGGGAATGTTCAGCGTGATTTCAGGCATGGTT 295
**** ********** ** ****** ** ******** **********************
consensus_5764#0 GACAAGGTGTTCCAGCGTGCCCTGCGTAAACTCCCGGTGCCAATGTCGATCAGGGACATG 1919
consensus_5764#1 GACAAGGTGTTCCAGCGTGCCCTGGGTTAACTCCCGGTGCCAATGTCGATCAGGGACATG 355
************************ ** ********************************
consensus_5764#0 GCCCGGCAGTGGGGCATCTCCGTGCGAACGGTCACCAACGGTGGAGGAACGTTCAGCTCC 1979
consensus_5764#1 GCCCGGCAATGGGGCATTTCCGTGCGAACGGTCCCCAACGGTGGAGGAACGTTCAGCTCC 415
******** ******** *************** **************************
consensus_5764#0 GGGTATGGCCAGTGGGAGAGTTGCACCGATGAGTTTGCAAGTCCATAGTCCATGGATAGA 2039
consensus_5764#1 GGGTATGGCCAGTGGGAAAGTTGCCCCCATGAGTTTGCAAGTCCATTGTCCCTGGATAGA 475
***************** ****** ** ****************** **** ********
consensus_5764#0 CCCATGAAGTTTTGCAGGAACAAGTGATATGAAGAATAATGCTGATCTGCTGTTTTGCTG 2099
consensus_5764#1 CCCCTGAAGTTTTGCCGGAACCAATGATTTGAAGAATAATGCTGATTTGCTGTTTTGCCG 535
*** *********** ***** * **** ***************** *********** *
consensus_5764#0 TAGGGCAGATGCAGAATCCAGTGTGAGTGTTGTGAGAGAATATTTATATTTTTGTTATGC 2159
consensus_5764#1 TAGGGCAGATGCAAAATCCCGTGTGAGTGTTGTGAAAAAATATTTATATTTTTGTTTTGC 595
************* ***** *************** * ****************** ***
consensus_5764#0 ATTAAGAGGCTGTGTGGATCATCTGTTTTTGATTAAACCGGTTTTGCTTAAAAAAT---- 2215
consensus_5764#1 CTTAAAAGGCTGGGTGGATTATCTGTTTTTGATTAAACCGGTTTTGCTTAAAAAATATTT 655
**** ****** ****** ************************************
consensus_5764#0 -----------------------------------------
consensus_5764#1 TTTTCTTCGGTTGTGGATTGTGGTTAAAAAAAAAAAAAAAA 696
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||