|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1870 fasta sequence
[AATGCGCTTCGCGGCGGCGCTGCGCTGCTCCCTCGCACGCGCGTGACCGCGCCGCCGCCGTTGCCTCGCCTCTCCTCGCAGCCTCTCTCTGCCTCTCCTCGTCGCCACTGAGCACTGGGTCTCGGTGCCGCCGCCGCCGTCCGCTTGTCCCGAGCCGCGTAGGCCGGAGGACGGGGGCGCACACCACCGGTCCCCGCCGCGGCGCCGCATCGGCACAGCCACAGACCACCGCCGAGCGAAGGCGTCCATCTGCCGCACCGCCACCGGTCGCCAGCTCCGGGAGCTCGGGAACCCCGTCTGACTGGCTCCCTCTCGCACTGTCGCCTGACCCTCATCCCCTGCCCGTCGCTGTCGACCGCCGTTCGCGGCTTCTCTACCCTCCGCGCCGCGGCTCCCGGCTGCCGTCTCCTGCTCCTACAGGACCACCGGACGAAAATTTCTTGTTACGCCACTACTTCATAAGCTACTGCGACGATCTCTCTTCCTAGGCACCTCCACCCGGTGGCCTGGCTACCTGCTACACCGATTCACCCTTTACTTGGGTATTGTTTCCCCCATTTGCAAAATGCTGCCTAAGGATACTTTTGATAATCTCCAAGCCAAGGTTCAAATGTGTTTCGTTAGGATAATAGCTATGAGTGCAGGAAAACCGACTTTATTTGCTCCAGGAATAGTTATTGCGAAGAAGAAGCTATCATGCTACGTCATAACAGACAAGGGGACATTTTGTTATGGTTCTGAAGGGCTCTATGCTGCTGTTTTTCCTGGCTTGAACATGGAGAGTGTGGCGATTAACTTTACCGATGTATCAATTGCTGATAGTTGTCTCTTTCATGCTAAGCAAACCAAAATGCACTAATCCATTAGCTGCTGTGAAAATCTGTGAATCTGGACCGTTGATTAATGAGGATGTTTACACCTTGGGATATCAGAATCCAAAAGTACCTTTTATCTCCTGGATCGGTCCGGTTTGTAAGAAAGGCGGATTTTACTCATGATTGTGCTACTTCCTTGTGCCTCATTTGGGTCCCCTGTCTTTACTGTTGATGGTCTTTTGGTTGGGATCTGCTTCGACAATAGAGGTGCTGTCCGGGCCTATAAGGTGCAATCTATTATACAACATGTTCAGAAGATTCAAACACAGATAAAAAGCAAGGCAATCAAGGACATTTTGCAGCCTTTTATGGACCAAAAGAATGTTTTATTAGAGAAAAGGAAGCCACCAGTTGATACTAGTGCCGGAGCTTCAAAAAAGAGTAAAACCACACGTTGATAGCGTCAGTCTATCAGAGCTTCGAAAAAAGAGAAAAGCCCTTAGCAATGCACATAAAAGATGAAGGCGCAAGCTAACAGATAGACAGTGGTTACTTTGTGCGTGGATATTCGCATGCTCTATGACTCGTCATGCCTCAATGATGCTTCTTCACCCGTTTTCATTTGGCTGATGGAAAATCTTTTGGAGGCCAGCTTGTGGATTGTAGGTGGCTGCCACAAAATTGTGATTCCCTTCTAGGGGCAATCCAGGGCTGTTAAAACCTCTCAAGCTTTCAAATTGTAGCAGCTGTGTGGTGATATGCTTCCTCAGATTACAGATTCCGGATACCCTATTGGTTTCTTTATGCTTCCTCAGATTTCAGATTCCGGATACTCTATTGGTTTCTTTATGCCTGACCCGCAGAACTGTTTATTTTTTGATGCTTGCGTTGCCCTGTGCCCTACTCGCTTAGTGTTGTCTGTTCTTGTGAAACGTGTTTTAGTGGGAAGTCTAGTAAAAAAAACAGGTTTAGTTTTTCATTCTGTTAACATGTATTTAATACATCCTCCGTTGGGATTATATAACACCCCCATCGGTTTGCTTAAACAAAAAAGA]
[+] EMBL AK067734 [AATGCGCTTCGCGGCGGCGCTGCGCTGCTCCCTCGCACGCGCGTGACCGCGCCGCCGCCGTTGCCTCGCCTCTCCTCGCAGCCTCTCTCTGCCTCTCCTCGTCGCCACTGAGCACTGGGTCTCGGTGCCGCCGCCGCCGTCCGCTTGTCCCGAGCCGCGTAGGCCGGAGGACGGGGGCGCACACCACCGGTCCCCGCCGCGGCGCCGCATCGGCACAGCCACAGACCACCGCCGAGCGAAGGCGTCCATCTGCCGCACCGCCACCGGTCGCCAGCTCCGGGAGCTCGGGAACCCCGTCTGACTGGCTCCCTCTCGCACTGTCGCCTGACCCTCATCCCCTGCCCGTCGCTGTCGACCGCCGTTCGCGGCTTCTCTACCCTCCGCGCCGCGGCTCCCGGCTGCCGTCTCCTGCTCCTACAGGACCACCGGACGAAAATTTCTTGTTACGCCACTACTTCATAAGCTACTGCGACGATCTCTCTTCCTAGGCACCTCCACCCGGTGGCCTGGCTACCTGCTACACCGATTCACCCTTTACTTGGGTATTGTTTCCCCCATTTGCAAAATGCTGCCTAAGGATACTTTTGATAATCTCCAAGCCAAGGTTCAAATGTGTTTCGTTAGGATAATAGCTATGAGTGCAGGAAAACCGACTTTATTTGCTCCAGGAATAGTTATTGCGAAGAAGAAGCTATCATGCTACGTCATAACAGACAAGGGGACATTTTGTTATGGTTCTGAAGGGCTCTATGCTGCTGTTTTTCCTGGCTTGAACATGGAGAGTGTGGCGATTAACTTTACCGATGTATCAATTGCTGATAGTTGTCTCTTTCATGCTAAGCAAACCAAAATGCACTAATCCATTAGCTGCTGTGAAAATCTGTGAATCTGGACCGTTGATTAATGAGGATGTTTACACCTTGGGATATCAGAATCCAAAAGTACCTTTTATCTCCTGGATCGGTCCGGTTTGTAAGAAAGGCGGATTTTACTCATGATTGTGCTACTTCCTTGTGCCTCATTTGGGTCCCCTGTCTTTACTGTTGATGGTCTTTTGGTTGGGATCTGCTTCGACAATAGAGGTGCTGTCCGGGCCTATAAGGTGCAATCTATTATACAACATGTTCAGAAGATTCAAACACAGATAAAAAGCAAGGCAATCAAGGACATTTTGCAGCCTTTTATGGACCAAAAGAATGTTTTATTAGAGAAAAGGAAGCCACCAGTTGATACTAGTGCCGGAGCTTCAAAAAAGAGTAAAACCACACGTTGATAGCGTCAGTCTATCAGAGCTTCGAAAAAAGAGAAAAGCCCTTAGCAATGCACATAAAAGATGAAGGCGCAAGCTAACAGATAGACAGTGGTTACTTTGTGCGTGGATATTCGCATGCTCTATGACTCGTCATGCCTCAATGATGCTTCTTCACCCGTTTTCATTTGGCTGATGGAAAATCTTTTGGAGGCCAGCTTGTGGATTGTAGGTGGCTGCCACAAAATTGTGATTCCCTTCTAGGGGCAATCCAGGGCTGTTAAAACCTCTCAAGCTTTCAAATTGTAGCAGCTGTGTGGTGATATGCTTCCTCAGATTACAGATTCCGGATACCCTATTGGTTTCTTTATGCTTCCTCAGA ]
[-] EMBL CB655546 [ GTTCAGAAGATTCAAACACAGATAAAAAGCAAGGCAATCAAGGACATTTTGCAGCCTTTTATGGACCAAAAGAATGTTTTATTAGAGAAAAGGAAGCCACCAGTTGATACTAGTGCCGGAGCTTCAAAAAAGAGTAAAACCACACGTTGATAGCGTCAGTCTATCAGAGCTTCGAAAAAAGAGAAAAGCCCTTAGCAATGCACATAAAAGATGAAGGCGCAAGCTAACAGATAGACAGTGGTTACTTTGTGCGTGGATATTCGCATGCTCTATGACTCGTCATGCCTCAATGATGCTTCTTCACCCGTTTTCATTTGGCTGATGGAAAATCTTTTGGAGGCCAGCTTGTGGATTGTAGGTGGCTGCCACAAAATTGTGATTCCTTTCTAGGGGCAATCCAGGGCTGTTAAAACCTCTCAAGCTTTCAAATTGTAGCAGCTGTGTGGTGATATGCTTCCTCAGATTACAGATTCCGGATACCCTATTGGTTTCTTTATGCTTCCTCAGATTTCAGATTCCGGATACTCTATTGGTTTCTTTATGCCTGACCCGCAGAACTGTTTATTTTTTGATGCTTGCGTTGCCCTGTGCCCTACTCGCTTAGTGTTGTCTGTTCTTGTGAAACGTGTTTTAGTGGGAAGTCTAGTAAAAAAAACAGGTTTAGTTTTTCATTCTGTTAACATGTATTTAATACATCCTCCGTTGGGATTATATAACACCCCCATCGGTTTGCTTAAACAAAAAAGA]
consensusID : consensus_5767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence
[GATGTTTACACCTGGGGATATCAGAATCCAAAAGTACCTTTTATCTCCTGGATCGGTCCGGTTTGTAAGAAAGGCGGATTTTACTCATGATTGTGCTACTTCCTTGTGCCTCATTTGGGTCCCCTGTCTTTACTGTTGATGGTCTTTTGGTTGGGATCTGCTTCGACAATAGAGGTGCTGTCCGGGCCTATAAGGTGCAATCTATTATACAACATGTTCAGAAGATTCAAACACAGATAAAAAGCAAGGTGCAGTATTTTGAAATCTTTTGCAATCAATAACATCACAAATTTCTCTTATTTACAATCTCTTGGTTTTTGTGTAGGCAATCAAGGACATTTTGCAGCCTTTTATGGACCAAAAGAATGTTTTATTAGAGAAAAGGAAGCCACCAGTTGATACTAGTGCCGGAGCTTCAAAAAAGAGTAAAACCACACGTTGATAGCGTCAGTCTATCAGAGCTTCGAAAAAAGAGAAAAGCCCTTAGCAATGCACATAAAAGATGAAGGCGCAAGCTAACAGATAGACAGTGGTTACTTTGTGCGTGGATATTCGCATGCTCTATGACTCGTCATGCCTCAATGATGCTTCTTCACCCGTTTTCATTTGGCTGATGGAAAATCTTTTGGAGGCCAGCTTGTGGATTGTAGGTGGCTGCCACAAAATTGTGATTCCTTTCTAGGGGCAATCCAGGGCTGTTAAAACCTCTCAAGCTTTCAAATTGTAGCAGCTGTGTGGTGATATGCTTCCTCAGATTACAGATTCCGGATACCCTATTGGTTTCTTTATGCTTCCTCAGATTTCAG]
[-] EMBL CB680882 [GATGTTTACACCTGGGGATATCAGAATCCAAAAGTACCTTTTATCTCCTGGATCGGTCCGGTTTGTAAGAAAGGCGGATTTTACTCATGATTGTGCTACTTCCTTGTGCCTCATTTGGGTCCCCTGTCTTTACTGTTGATGGTCTTTTGGTTGGGATCTGCTTCGACAATAGAGGTGCTGTCCGGGCCTATAAGGTGCAATCTATTATACAACATGTTCAGAAGATTCAAACACAGATAAAAAGCAAGGTGCAGTATTTTGAAATCTTTTGCAATCAATAACATCACAAATTTCTCTTATTTACAATCTCTTGGTTTTTGTGTAGGCAATCAAGGACATTTTGCAGCCTTTTATGGACCAAAAGAATGTTTTATTAGAGAAAAGGAAGCCACCAGTTGATACTAGTGCCGGAGCTTCAAAAAAGAGTAAAACCACACGTTGATAGCGTCAGTCTATCAGAGCTTCGAAAAAAGAGAAAAGCCCTTAGCAATGCACATAAAAGATGAAGGCGCAAGCTAACAGATAGACAGTGGTTACTTTGTGCGTGGATATTCGCATGCTCTATGACTCGTCATGCCTCAATGATGCTTCTTCACCCGTTTTCATTTGGCTGATGGAAAATCTTTTGGAGGCCAGCTTGTGGATTGTAGGTGGCTGCCACAAAATTGTGATTCCTTTCTAGGGGCAATCCAGGGCTGTTAAAACCTCTCAAGCTTTCAAATTGTAGCAGCTGTGTGGTGATATGCTTCCTCAGATTACAGATTCCGGATACCCTATTGGTTTCTTTATGCTTCCTCAGATTTCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5767#0 AATGCGCTTCGCGGCGGCGCTGCGCTGCTCCCTCGCACGCGCGTGACCGCGCCGCCGCCG 60
consensus_5767#1 ------------------------------------------------------------
consensus_5767#0 TTGCCTCGCCTCTCCTCGCAGCCTCTCTCTGCCTCTCCTCGTCGCCACTGAGCACTGGGT 120
consensus_5767#1 ------------------------------------------------------------
consensus_5767#0 CTCGGTGCCGCCGCCGCCGTCCGCTTGTCCCGAGCCGCGTAGGCCGGAGGACGGGGGCGC 180
consensus_5767#1 ------------------------------------------------------------
consensus_5767#0 ACACCACCGGTCCCCGCCGCGGCGCCGCATCGGCACAGCCACAGACCACCGCCGAGCGAA 240
consensus_5767#1 ------------------------------------------------------------
consensus_5767#0 GGCGTCCATCTGCCGCACCGCCACCGGTCGCCAGCTCCGGGAGCTCGGGAACCCCGTCTG 300
consensus_5767#1 ------------------------------------------------------------
consensus_5767#0 ACTGGCTCCCTCTCGCACTGTCGCCTGACCCTCATCCCCTGCCCGTCGCTGTCGACCGCC 360
consensus_5767#1 ------------------------------------------------------------
consensus_5767#0 GTTCGCGGCTTCTCTACCCTCCGCGCCGCGGCTCCCGGCTGCCGTCTCCTGCTCCTACAG 420
consensus_5767#1 ------------------------------------------------------------
consensus_5767#0 GACCACCGGACGAAAATTTCTTGTTACGCCACTACTTCATAAGCTACTGCGACGATCTCT 480
consensus_5767#1 ------------------------------------------------------------
consensus_5767#0 CTTCCTAGGCACCTCCACCCGGTGGCCTGGCTACCTGCTACACCGATTCACCCTTTACTT 540
consensus_5767#1 ------------------------------------------------------------
consensus_5767#0 GGGTATTGTTTCCCCCATTTGCAAAATGCTGCCTAAGGATACTTTTGATAATCTCCAAGC 600
consensus_5767#1 ------------------------------------------------------------
consensus_5767#0 CAAGGTTCAAATGTGTTTCGTTAGGATAATAGCTATGAGTGCAGGAAAACCGACTTTATT 660
consensus_5767#1 ------------------------------------------------------------
consensus_5767#0 TGCTCCAGGAATAGTTATTGCGAAGAAGAAGCTATCATGCTACGTCATAACAGACAAGGG 720
consensus_5767#1 ------------------------------------------------------------
consensus_5767#0 GACATTTTGTTATGGTTCTGAAGGGCTCTATGCTGCTGTTTTTCCTGGCTTGAACATGGA 780
consensus_5767#1 ------------------------------------------------------------
consensus_5767#0 GAGTGTGGCGATTAACTTTACCGATGTATCAATTGCTGATAGTTGTCTCTTTCATGCTAA 840
consensus_5767#1 ------------------------------------------------------------
consensus_5767#0 GCAAACCAAAATGCACTAATCCATTAGCTGCTGTGAAAATCTGTGAATCTGGACCGTTGA 900
consensus_5767#1 ------------------------------------------------------------
consensus_5767#0 TTAATGAGGATGTTTACACCTTGGGATATCAGAATCCAAAAGTACCTTTTATCTCCTGGA 960
consensus_5767#1 --------GATGTTTACACCTGGGGATATCAGAATCCAAAAGTACCTTTTATCTCCTGGA 52
************* **************************************
consensus_5767#0 TCGGTCCGGTTTGTAAGAAAGGCGGATTTTACTCATGATTGTGCTACTTCCTTGTGCCTC 1020
consensus_5767#1 TCGGTCCGGTTTGTAAGAAAGGCGGATTTTACTCATGATTGTGCTACTTCCTTGTGCCTC 112
************************************************************
consensus_5767#0 ATTTGGGTCCCCTGTCTTTACTGTTGATGGTCTTTTGGTTGGGATCTGCTTCGACAATAG 1080
consensus_5767#1 ATTTGGGTCCCCTGTCTTTACTGTTGATGGTCTTTTGGTTGGGATCTGCTTCGACAATAG 172
************************************************************
consensus_5767#0 AGGTGCTGTCCGGGCCTATAAGGTGCAATCTATTATACAACATGTTCAGAAGATTCAAAC 1140
consensus_5767#1 AGGTGCTGTCCGGGCCTATAAGGTGCAATCTATTATACAACATGTTCAGAAGATTCAAAC 232
************************************************************
consensus_5767#0 ACAGATAAAAAGCAAGG------------------------------------------- 1157
consensus_5767#1 ACAGATAAAAAGCAAGGTGCAGTATTTTGAAATCTTTTGCAATCAATAACATCACAAATT 292
*****************
consensus_5767#0 ----------------------------------CAATCAAGGACATTTTGCAGCCTTTT 1183
consensus_5767#1 TCTCTTATTTACAATCTCTTGGTTTTTGTGTAGGCAATCAAGGACATTTTGCAGCCTTTT 352
**************************
consensus_5767#0 ATGGACCAAAAGAATGTTTTATTAGAGAAAAGGAAGCCACCAGTTGATACTAGTGCCGGA 1243
consensus_5767#1 ATGGACCAAAAGAATGTTTTATTAGAGAAAAGGAAGCCACCAGTTGATACTAGTGCCGGA 412
************************************************************
consensus_5767#0 GCTTCAAAAAAGAGTAAAACCACACGTTGATAGCGTCAGTCTATCAGAGCTTCGAAAAAA 1303
consensus_5767#1 GCTTCAAAAAAGAGTAAAACCACACGTTGATAGCGTCAGTCTATCAGAGCTTCGAAAAAA 472
************************************************************
consensus_5767#0 GAGAAAAGCCCTTAGCAATGCACATAAAAGATGAAGGCGCAAGCTAACAGATAGACAGTG 1363
consensus_5767#1 GAGAAAAGCCCTTAGCAATGCACATAAAAGATGAAGGCGCAAGCTAACAGATAGACAGTG 532
************************************************************
consensus_5767#0 GTTACTTTGTGCGTGGATATTCGCATGCTCTATGACTCGTCATGCCTCAATGATGCTTCT 1423
consensus_5767#1 GTTACTTTGTGCGTGGATATTCGCATGCTCTATGACTCGTCATGCCTCAATGATGCTTCT 592
************************************************************
consensus_5767#0 TCACCCGTTTTCATTTGGCTGATGGAAAATCTTTTGGAGGCCAGCTTGTGGATTGTAGGT 1483
consensus_5767#1 TCACCCGTTTTCATTTGGCTGATGGAAAATCTTTTGGAGGCCAGCTTGTGGATTGTAGGT 652
************************************************************
consensus_5767#0 GGCTGCCACAAAATTGTGATTCCCTTCTAGGGGCAATCCAGGGCTGTTAAAACCTCTCAA 1543
consensus_5767#1 GGCTGCCACAAAATTGTGATTCCTTTCTAGGGGCAATCCAGGGCTGTTAAAACCTCTCAA 712
*********************** ************************************
consensus_5767#0 GCTTTCAAATTGTAGCAGCTGTGTGGTGATATGCTTCCTCAGATTACAGATTCCGGATAC 1603
consensus_5767#1 GCTTTCAAATTGTAGCAGCTGTGTGGTGATATGCTTCCTCAGATTACAGATTCCGGATAC 772
************************************************************
consensus_5767#0 CCTATTGGTTTCTTTATGCTTCCTCAGATTTCAGATTCCGGATACTCTATTGGTTTCTTT 1663
consensus_5767#1 CCTATTGGTTTCTTTATGCTTCCTCAGATTTCAG-------------------------- 806
**********************************
consensus_5767#0 ATGCCTGACCCGCAGAACTGTTTATTTTTTGATGCTTGCGTTGCCCTGTGCCCTACTCGC 1723
consensus_5767#1 ------------------------------------------------------------
consensus_5767#0 TTAGTGTTGTCTGTTCTTGTGAAACGTGTTTTAGTGGGAAGTCTAGTAAAAAAAACAGGT 1783
consensus_5767#1 ------------------------------------------------------------
consensus_5767#0 TTAGTTTTTCATTCTGTTAACATGTATTTAATACATCCTCCGTTGGGATTATATAACACC 1843
consensus_5767#1 ------------------------------------------------------------
consensus_5767#0 CCCATCGGTTTGCTTAAACAAAAAAGA 1870
consensus_5767#1 ---------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||