These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1870 fasta sequence [AATGCGCTTCGCGGCGGCGCTGCGCTGCTCCCTCGCACGCGCGTGACCGCGCCGCCGCCGTTGCCTCGCCTCTCCTCGCAGCCTCTCTCTGCCTCTCCTCGTCGCCACTGAGCACTGGGTCTCGGTGCCGCCGCCGCCGTCCGCTTGTCCCGAGCCGCGTAGGCCGGAGGACGGGGGCGCACACCACCGGTCCCCGCCGCGGCGCCGCATCGGCACAGCCACAGACCACCGCCGAGCGAAGGCGTCCATCTGCCGCACCGCCACCGGTCGCCAGCTCCGGGAGCTCGGGAACCCCGTCTGACTGGCTCCCTCTCGCACTGTCGCCTGACCCTCATCCCCTGCCCGTCGCTGTCGACCGCCGTTCGCGGCTTCTCTACCCTCCGCGCCGCGGCTCCCGGCTGCCGTCTCCTGCTCCTACAGGACCACCGGACGAAAATTTCTTGTTACGCCACTACTTCATAAGCTACTGCGACGATCTCTCTTCCTAGGCACCTCCACCCGGTGGCCTGGCTACCTGCTACACCGATTCACCCTTTACTTGGGTATTGTTTCCCCCATTTGCAAAATGCTGCCTAAGGATACTTTTGATAATCTCCAAGCCAAGGTTCAAATGTGTTTCGTTAGGATAATAGCTATGAGTGCAGGAAAACCGACTTTATTTGCTCCAGGAATAGTTATTGCGAAGAAGAAGCTATCATGCTACGTCATAACAGACAAGGGGACATTTTGTTATGGTTCTGAAGGGCTCTATGCTGCTGTTTTTCCTGGCTTGAACATGGAGAGTGTGGCGATTAACTTTACCGATGTATCAATTGCTGATAGTTGTCTCTTTCATGCTAAGCAAACCAAAATGCACTAATCCATTAGCTGCTGTGAAAATCTGTGAATCTGGACCGTTGATTAATGAGGATGTTTACACCTTGGGATATCAGAATCCAAAAGTACCTTTTATCTCCTGGATCGGTCCGGTTTGTAAGAAAGGCGGATTTTACTCATGATTGTGCTACTTCCTTGTGCCTCATTTGGGTCCCCTGTCTTTACTGTTGATGGTCTTTTGGTTGGGATCTGCTTCGACAATAGAGGTGCTGTCCGGGCCTATAAGGTGCAATCTATTATACAACATGTTCAGAAGATTCAAACACAGATAAAAAGCAAGGCAATCAAGGACATTTTGCAGCCTTTTATGGACCAAAAGAATGTTTTATTAGAGAAAAGGAAGCCACCAGTTGATACTAGTGCCGGAGCTTCAAAAAAGAGTAAAACCACACGTTGATAGCGTCAGTCTATCAGAGCTTCGAAAAAAGAGAAAAGCCCTTAGCAATGCACATAAAAGATGAAGGCGCAAGCTAACAGATAGACAGTGGTTACTTTGTGCGTGGATATTCGCATGCTCTATGACTCGTCATGCCTCAATGATGCTTCTTCACCCGTTTTCATTTGGCTGATGGAAAATCTTTTGGAGGCCAGCTTGTGGATTGTAGGTGGCTGCCACAAAATTGTGATTCCCTTCTAGGGGCAATCCAGGGCTGTTAAAACCTCTCAAGCTTTCAAATTGTAGCAGCTGTGTGGTGATATGCTTCCTCAGATTACAGATTCCGGATACCCTATTGGTTTCTTTATGCTTCCTCAGATTTCAGATTCCGGATACTCTATTGGTTTCTTTATGCCTGACCCGCAGAACTGTTTATTTTTTGATGCTTGCGTTGCCCTGTGCCCTACTCGCTTAGTGTTGTCTGTTCTTGTGAAACGTGTTTTAGTGGGAAGTCTAGTAAAAAAAACAGGTTTAGTTTTTCATTCTGTTAACATGTATTTAATACATCCTCCGTTGGGATTATATAACACCCCCATCGGTTTGCTTAAACAAAAAAGA] [+] EMBL AK067734 [AATGCGCTTCGCGGCGGCGCTGCGCTGCTCCCTCGCACGCGCGTGACCGCGCCGCCGCCGTTGCCTCGCCTCTCCTCGCAGCCTCTCTCTGCCTCTCCTCGTCGCCACTGAGCACTGGGTCTCGGTGCCGCCGCCGCCGTCCGCTTGTCCCGAGCCGCGTAGGCCGGAGGACGGGGGCGCACACCACCGGTCCCCGCCGCGGCGCCGCATCGGCACAGCCACAGACCACCGCCGAGCGAAGGCGTCCATCTGCCGCACCGCCACCGGTCGCCAGCTCCGGGAGCTCGGGAACCCCGTCTGACTGGCTCCCTCTCGCACTGTCGCCTGACCCTCATCCCCTGCCCGTCGCTGTCGACCGCCGTTCGCGGCTTCTCTACCCTCCGCGCCGCGGCTCCCGGCTGCCGTCTCCTGCTCCTACAGGACCACCGGACGAAAATTTCTTGTTACGCCACTACTTCATAAGCTACTGCGACGATCTCTCTTCCTAGGCACCTCCACCCGGTGGCCTGGCTACCTGCTACACCGATTCACCCTTTACTTGGGTATTGTTTCCCCCATTTGCAAAATGCTGCCTAAGGATACTTTTGATAATCTCCAAGCCAAGGTTCAAATGTGTTTCGTTAGGATAATAGCTATGAGTGCAGGAAAACCGACTTTATTTGCTCCAGGAATAGTTATTGCGAAGAAGAAGCTATCATGCTACGTCATAACAGACAAGGGGACATTTTGTTATGGTTCTGAAGGGCTCTATGCTGCTGTTTTTCCTGGCTTGAACATGGAGAGTGTGGCGATTAACTTTACCGATGTATCAATTGCTGATAGTTGTCTCTTTCATGCTAAGCAAACCAAAATGCACTAATCCATTAGCTGCTGTGAAAATCTGTGAATCTGGACCGTTGATTAATGAGGATGTTTACACCTTGGGATATCAGAATCCAAAAGTACCTTTTATCTCCTGGATCGGTCCGGTTTGTAAGAAAGGCGGATTTTACTCATGATTGTGCTACTTCCTTGTGCCTCATTTGGGTCCCCTGTCTTTACTGTTGATGGTCTTTTGGTTGGGATCTGCTTCGACAATAGAGGTGCTGTCCGGGCCTATAAGGTGCAATCTATTATACAACATGTTCAGAAGATTCAAACACAGATAAAAAGCAAGGCAATCAAGGACATTTTGCAGCCTTTTATGGACCAAAAGAATGTTTTATTAGAGAAAAGGAAGCCACCAGTTGATACTAGTGCCGGAGCTTCAAAAAAGAGTAAAACCACACGTTGATAGCGTCAGTCTATCAGAGCTTCGAAAAAAGAGAAAAGCCCTTAGCAATGCACATAAAAGATGAAGGCGCAAGCTAACAGATAGACAGTGGTTACTTTGTGCGTGGATATTCGCATGCTCTATGACTCGTCATGCCTCAATGATGCTTCTTCACCCGTTTTCATTTGGCTGATGGAAAATCTTTTGGAGGCCAGCTTGTGGATTGTAGGTGGCTGCCACAAAATTGTGATTCCCTTCTAGGGGCAATCCAGGGCTGTTAAAACCTCTCAAGCTTTCAAATTGTAGCAGCTGTGTGGTGATATGCTTCCTCAGATTACAGATTCCGGATACCCTATTGGTTTCTTTATGCTTCCTCAGA ] [-] EMBL CB655546 [ GTTCAGAAGATTCAAACACAGATAAAAAGCAAGGCAATCAAGGACATTTTGCAGCCTTTTATGGACCAAAAGAATGTTTTATTAGAGAAAAGGAAGCCACCAGTTGATACTAGTGCCGGAGCTTCAAAAAAGAGTAAAACCACACGTTGATAGCGTCAGTCTATCAGAGCTTCGAAAAAAGAGAAAAGCCCTTAGCAATGCACATAAAAGATGAAGGCGCAAGCTAACAGATAGACAGTGGTTACTTTGTGCGTGGATATTCGCATGCTCTATGACTCGTCATGCCTCAATGATGCTTCTTCACCCGTTTTCATTTGGCTGATGGAAAATCTTTTGGAGGCCAGCTTGTGGATTGTAGGTGGCTGCCACAAAATTGTGATTCCTTTCTAGGGGCAATCCAGGGCTGTTAAAACCTCTCAAGCTTTCAAATTGTAGCAGCTGTGTGGTGATATGCTTCCTCAGATTACAGATTCCGGATACCCTATTGGTTTCTTTATGCTTCCTCAGATTTCAGATTCCGGATACTCTATTGGTTTCTTTATGCCTGACCCGCAGAACTGTTTATTTTTTGATGCTTGCGTTGCCCTGTGCCCTACTCGCTTAGTGTTGTCTGTTCTTGTGAAACGTGTTTTAGTGGGAAGTCTAGTAAAAAAAACAGGTTTAGTTTTTCATTCTGTTAACATGTATTTAATACATCCTCCGTTGGGATTATATAACACCCCCATCGGTTTGCTTAAACAAAAAAGA] consensusID : consensus_5767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence [GATGTTTACACCTGGGGATATCAGAATCCAAAAGTACCTTTTATCTCCTGGATCGGTCCGGTTTGTAAGAAAGGCGGATTTTACTCATGATTGTGCTACTTCCTTGTGCCTCATTTGGGTCCCCTGTCTTTACTGTTGATGGTCTTTTGGTTGGGATCTGCTTCGACAATAGAGGTGCTGTCCGGGCCTATAAGGTGCAATCTATTATACAACATGTTCAGAAGATTCAAACACAGATAAAAAGCAAGGTGCAGTATTTTGAAATCTTTTGCAATCAATAACATCACAAATTTCTCTTATTTACAATCTCTTGGTTTTTGTGTAGGCAATCAAGGACATTTTGCAGCCTTTTATGGACCAAAAGAATGTTTTATTAGAGAAAAGGAAGCCACCAGTTGATACTAGTGCCGGAGCTTCAAAAAAGAGTAAAACCACACGTTGATAGCGTCAGTCTATCAGAGCTTCGAAAAAAGAGAAAAGCCCTTAGCAATGCACATAAAAGATGAAGGCGCAAGCTAACAGATAGACAGTGGTTACTTTGTGCGTGGATATTCGCATGCTCTATGACTCGTCATGCCTCAATGATGCTTCTTCACCCGTTTTCATTTGGCTGATGGAAAATCTTTTGGAGGCCAGCTTGTGGATTGTAGGTGGCTGCCACAAAATTGTGATTCCTTTCTAGGGGCAATCCAGGGCTGTTAAAACCTCTCAAGCTTTCAAATTGTAGCAGCTGTGTGGTGATATGCTTCCTCAGATTACAGATTCCGGATACCCTATTGGTTTCTTTATGCTTCCTCAGATTTCAG] [-] EMBL CB680882 [GATGTTTACACCTGGGGATATCAGAATCCAAAAGTACCTTTTATCTCCTGGATCGGTCCGGTTTGTAAGAAAGGCGGATTTTACTCATGATTGTGCTACTTCCTTGTGCCTCATTTGGGTCCCCTGTCTTTACTGTTGATGGTCTTTTGGTTGGGATCTGCTTCGACAATAGAGGTGCTGTCCGGGCCTATAAGGTGCAATCTATTATACAACATGTTCAGAAGATTCAAACACAGATAAAAAGCAAGGTGCAGTATTTTGAAATCTTTTGCAATCAATAACATCACAAATTTCTCTTATTTACAATCTCTTGGTTTTTGTGTAGGCAATCAAGGACATTTTGCAGCCTTTTATGGACCAAAAGAATGTTTTATTAGAGAAAAGGAAGCCACCAGTTGATACTAGTGCCGGAGCTTCAAAAAAGAGTAAAACCACACGTTGATAGCGTCAGTCTATCAGAGCTTCGAAAAAAGAGAAAAGCCCTTAGCAATGCACATAAAAGATGAAGGCGCAAGCTAACAGATAGACAGTGGTTACTTTGTGCGTGGATATTCGCATGCTCTATGACTCGTCATGCCTCAATGATGCTTCTTCACCCGTTTTCATTTGGCTGATGGAAAATCTTTTGGAGGCCAGCTTGTGGATTGTAGGTGGCTGCCACAAAATTGTGATTCCTTTCTAGGGGCAATCCAGGGCTGTTAAAACCTCTCAAGCTTTCAAATTGTAGCAGCTGTGTGGTGATATGCTTCCTCAGATTACAGATTCCGGATACCCTATTGGTTTCTTTATGCTTCCTCAGATTTCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5767#0 AATGCGCTTCGCGGCGGCGCTGCGCTGCTCCCTCGCACGCGCGTGACCGCGCCGCCGCCG 60 consensus_5767#1 ------------------------------------------------------------ consensus_5767#0 TTGCCTCGCCTCTCCTCGCAGCCTCTCTCTGCCTCTCCTCGTCGCCACTGAGCACTGGGT 120 consensus_5767#1 ------------------------------------------------------------ consensus_5767#0 CTCGGTGCCGCCGCCGCCGTCCGCTTGTCCCGAGCCGCGTAGGCCGGAGGACGGGGGCGC 180 consensus_5767#1 ------------------------------------------------------------ consensus_5767#0 ACACCACCGGTCCCCGCCGCGGCGCCGCATCGGCACAGCCACAGACCACCGCCGAGCGAA 240 consensus_5767#1 ------------------------------------------------------------ consensus_5767#0 GGCGTCCATCTGCCGCACCGCCACCGGTCGCCAGCTCCGGGAGCTCGGGAACCCCGTCTG 300 consensus_5767#1 ------------------------------------------------------------ consensus_5767#0 ACTGGCTCCCTCTCGCACTGTCGCCTGACCCTCATCCCCTGCCCGTCGCTGTCGACCGCC 360 consensus_5767#1 ------------------------------------------------------------ consensus_5767#0 GTTCGCGGCTTCTCTACCCTCCGCGCCGCGGCTCCCGGCTGCCGTCTCCTGCTCCTACAG 420 consensus_5767#1 ------------------------------------------------------------ consensus_5767#0 GACCACCGGACGAAAATTTCTTGTTACGCCACTACTTCATAAGCTACTGCGACGATCTCT 480 consensus_5767#1 ------------------------------------------------------------ consensus_5767#0 CTTCCTAGGCACCTCCACCCGGTGGCCTGGCTACCTGCTACACCGATTCACCCTTTACTT 540 consensus_5767#1 ------------------------------------------------------------ consensus_5767#0 GGGTATTGTTTCCCCCATTTGCAAAATGCTGCCTAAGGATACTTTTGATAATCTCCAAGC 600 consensus_5767#1 ------------------------------------------------------------ consensus_5767#0 CAAGGTTCAAATGTGTTTCGTTAGGATAATAGCTATGAGTGCAGGAAAACCGACTTTATT 660 consensus_5767#1 ------------------------------------------------------------ consensus_5767#0 TGCTCCAGGAATAGTTATTGCGAAGAAGAAGCTATCATGCTACGTCATAACAGACAAGGG 720 consensus_5767#1 ------------------------------------------------------------ consensus_5767#0 GACATTTTGTTATGGTTCTGAAGGGCTCTATGCTGCTGTTTTTCCTGGCTTGAACATGGA 780 consensus_5767#1 ------------------------------------------------------------ consensus_5767#0 GAGTGTGGCGATTAACTTTACCGATGTATCAATTGCTGATAGTTGTCTCTTTCATGCTAA 840 consensus_5767#1 ------------------------------------------------------------ consensus_5767#0 GCAAACCAAAATGCACTAATCCATTAGCTGCTGTGAAAATCTGTGAATCTGGACCGTTGA 900 consensus_5767#1 ------------------------------------------------------------ consensus_5767#0 TTAATGAGGATGTTTACACCTTGGGATATCAGAATCCAAAAGTACCTTTTATCTCCTGGA 960 consensus_5767#1 --------GATGTTTACACCTGGGGATATCAGAATCCAAAAGTACCTTTTATCTCCTGGA 52 ************* ************************************** consensus_5767#0 TCGGTCCGGTTTGTAAGAAAGGCGGATTTTACTCATGATTGTGCTACTTCCTTGTGCCTC 1020 consensus_5767#1 TCGGTCCGGTTTGTAAGAAAGGCGGATTTTACTCATGATTGTGCTACTTCCTTGTGCCTC 112 ************************************************************ consensus_5767#0 ATTTGGGTCCCCTGTCTTTACTGTTGATGGTCTTTTGGTTGGGATCTGCTTCGACAATAG 1080 consensus_5767#1 ATTTGGGTCCCCTGTCTTTACTGTTGATGGTCTTTTGGTTGGGATCTGCTTCGACAATAG 172 ************************************************************ consensus_5767#0 AGGTGCTGTCCGGGCCTATAAGGTGCAATCTATTATACAACATGTTCAGAAGATTCAAAC 1140 consensus_5767#1 AGGTGCTGTCCGGGCCTATAAGGTGCAATCTATTATACAACATGTTCAGAAGATTCAAAC 232 ************************************************************ consensus_5767#0 ACAGATAAAAAGCAAGG------------------------------------------- 1157 consensus_5767#1 ACAGATAAAAAGCAAGGTGCAGTATTTTGAAATCTTTTGCAATCAATAACATCACAAATT 292 ***************** consensus_5767#0 ----------------------------------CAATCAAGGACATTTTGCAGCCTTTT 1183 consensus_5767#1 TCTCTTATTTACAATCTCTTGGTTTTTGTGTAGGCAATCAAGGACATTTTGCAGCCTTTT 352 ************************** consensus_5767#0 ATGGACCAAAAGAATGTTTTATTAGAGAAAAGGAAGCCACCAGTTGATACTAGTGCCGGA 1243 consensus_5767#1 ATGGACCAAAAGAATGTTTTATTAGAGAAAAGGAAGCCACCAGTTGATACTAGTGCCGGA 412 ************************************************************ consensus_5767#0 GCTTCAAAAAAGAGTAAAACCACACGTTGATAGCGTCAGTCTATCAGAGCTTCGAAAAAA 1303 consensus_5767#1 GCTTCAAAAAAGAGTAAAACCACACGTTGATAGCGTCAGTCTATCAGAGCTTCGAAAAAA 472 ************************************************************ consensus_5767#0 GAGAAAAGCCCTTAGCAATGCACATAAAAGATGAAGGCGCAAGCTAACAGATAGACAGTG 1363 consensus_5767#1 GAGAAAAGCCCTTAGCAATGCACATAAAAGATGAAGGCGCAAGCTAACAGATAGACAGTG 532 ************************************************************ consensus_5767#0 GTTACTTTGTGCGTGGATATTCGCATGCTCTATGACTCGTCATGCCTCAATGATGCTTCT 1423 consensus_5767#1 GTTACTTTGTGCGTGGATATTCGCATGCTCTATGACTCGTCATGCCTCAATGATGCTTCT 592 ************************************************************ consensus_5767#0 TCACCCGTTTTCATTTGGCTGATGGAAAATCTTTTGGAGGCCAGCTTGTGGATTGTAGGT 1483 consensus_5767#1 TCACCCGTTTTCATTTGGCTGATGGAAAATCTTTTGGAGGCCAGCTTGTGGATTGTAGGT 652 ************************************************************ consensus_5767#0 GGCTGCCACAAAATTGTGATTCCCTTCTAGGGGCAATCCAGGGCTGTTAAAACCTCTCAA 1543 consensus_5767#1 GGCTGCCACAAAATTGTGATTCCTTTCTAGGGGCAATCCAGGGCTGTTAAAACCTCTCAA 712 *********************** ************************************ consensus_5767#0 GCTTTCAAATTGTAGCAGCTGTGTGGTGATATGCTTCCTCAGATTACAGATTCCGGATAC 1603 consensus_5767#1 GCTTTCAAATTGTAGCAGCTGTGTGGTGATATGCTTCCTCAGATTACAGATTCCGGATAC 772 ************************************************************ consensus_5767#0 CCTATTGGTTTCTTTATGCTTCCTCAGATTTCAGATTCCGGATACTCTATTGGTTTCTTT 1663 consensus_5767#1 CCTATTGGTTTCTTTATGCTTCCTCAGATTTCAG-------------------------- 806 ********************************** consensus_5767#0 ATGCCTGACCCGCAGAACTGTTTATTTTTTGATGCTTGCGTTGCCCTGTGCCCTACTCGC 1723 consensus_5767#1 ------------------------------------------------------------ consensus_5767#0 TTAGTGTTGTCTGTTCTTGTGAAACGTGTTTTAGTGGGAAGTCTAGTAAAAAAAACAGGT 1783 consensus_5767#1 ------------------------------------------------------------ consensus_5767#0 TTAGTTTTTCATTCTGTTAACATGTATTTAATACATCCTCCGTTGGGATTATATAACACC 1843 consensus_5767#1 ------------------------------------------------------------ consensus_5767#0 CCCATCGGTTTGCTTAAACAAAAAAGA 1870 consensus_5767#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||