cluster # 5772

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Oryza sativa
cluster # 5772 cluster # 5772 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5772#0 length = 764 sequences # 2

consensus_5772#1 length = 600 sequences # 1

consensusID : consensus_5772#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 764
fasta sequence

                              [TCCCTATAGGAGGGTTAGCCGCAAGATCATATTTTGTGTTCCCTCTAACAGAATCGTGTCCCGATGTACATTTTCTTTACAGAATTCACAGAGTGGATCCAATCATCCAAACAAGAAGCCAACTATTAACACAACCTATTGAACTAACATAAGCATGGAAGCTGCTACTTTCAACCTTTCTTCGTGTCATCCTCGGAAAAAAAAAAACTTTCTGCATGCAAAATATTGGCACATCATTCAAGCGAACATTTCTCTAGCTCTTGAGGTTGCAGATCTCTGTTCCTTGTGGAGACGCCCAGTCTCATGCCGACGGAGACGAGAGTTTCCAGTGATCTGGCACTATTGGCCAGAAGATCAGCGTCAAATTCTATTGCATCCTTCTCAAAGACGCATATTACTGTGCTCCCTCCAAAAGCGAAATATCCAAACTCATCTCCTTTGTGGACGTAGTCACCCTCTTCTTTCAAGAACTCGATGCTTCCAACCATTGTTGCTCCAATGGCCACGAATGCCACCTTTCCAAACTCTGAAGTTGAGATTATTGAAACAACTCGTTTGTTCTCGGTGAAAACATTACAATATTTGCTGTTCACAGCAATAGGATTGACCGTGTACAAGCATCCAGGAATTTCCACAAATTTCTCCAAAGTTCCTGAGACGGGAACATGAAACCTATGGTAATCCTGAGGCGCAAGCCGAAAGATTACCAATGATCCATTGCACAAAGCATCAGAGTGTACATCCTTCCCAAGGAGACCCTCGAT]

[+] EMBL CB629794             [TCCCTATAGGAGGGTTAGCCGCAAGATCATATTTTGTGTTCCCTCTAACAGAATCGTGTCCCGATGTACATTTTCTTTACAGAATTCACAGAGTGGATCCAATCATCCAAACAAGAAGCCAACTATTAACACAACCTATTGAACTAACATAAGCATGGAAGCTGCTACTTTCAACCTTTCTTCGTGTCATCCTCGGAAAAAAAAAAACTTTCTGCATGCAAAATATTGGCACATCATTCAAGCGAACATTTCTCTAGCTCTTGAGGTTGCAGATCTCTGTTCCTTGTGGAGACGCCCAGTCTCATGCCGACGGAGACGAGAGTTTCCAGTGATCTGGCACTATTGGCCAGAAGATCAGCGTCAAATTCTATTGCATCCTTCTCAAAGACGCATATTACTGTGCTCCCTCCAAAAGCGAAATATCCAAACTCATCTCCTTTGTGGACGTAGTCACCCTCTTCTTTCAAGAACTCGATGCTTCCAACCATTGTTGCTCCAATGGCCACGAATGCCACCTTTCCAAACTCTGAAGTTGAGATTATTGAAACAACTCGTTTGTTCTCGGTGAAAACATTACAATATTTGCTGTTCACAGCAATAGGATTGACCGTGTACAAGCATCCAGGAATTTCCACAAATTTCTCCAAAGTTCCTGAGACGGGAACATGAAACCTATGGTAATCCTGAGGCGCAAGCCGAAAGATTACCAATGATCCATTGCA                                          ]
[-] EMBL CF277980             [                                                                                                                                                         CATGGAAGCTGCTACTTTCAACCTTTCTTCGTGTCATCCTCGG AAAAAAAAAACTTCCTGCATGCAAAATATTGGCACATCATTCAAGCGAACATTTCTCTAGCTCTTGAGGTTGCAGATCGCTGTTCCTTGTGGAGACGCCCAGTCTCATGCCGACGGAGACGAGAGTTTCCAGTGATCTGGCACTATTGGCCAGAAGATCAGCGTCAAATTCTATTGCATCCTTCTCAAAGACGCATATTACTGTGCTCCCTCCAAAAGCGAAATATCCAAACTCATCTCCTTTGTGGACGTAGTCACCCTCTTCTTTCAAGAACTCGATGCTTCCAACCATTGTTGCTCCAATGGCCACGAATGCCACCTTTCCAAACTCTGAAGTTGAGATTATTGAAACAACTCGTTTGTTCTCGGTGAAAACATTACAATATTTGCTGTTCACAGCAATAGGATTGACCGTGTACAAGCATCCAGGAATTTCCACAAATTTCTCCAAAGTTCCTGAGACGGGAACATGAAACCTATGGTAATCCTGAGGCGCAAGCCGAAAGATTACCAATGATCCGTTGCACAAAGCATCAGAGTGTACATCCTTCCCAAGGAGACCCTCGAT]




>consensus_5772#0
TCCCTATAGGAGGGTTAGCCGCAAGATCATATTTTGTGTTCCCTCTAACAGAATCGTGTC
CCGATGTACATTTTCTTTACAGAATTCACAGAGTGGATCCAATCATCCAAACAAGAAGCC
AACTATTAACACAACCTATTGAACTAACATAAGCATGGAAGCTGCTACTTTCAACCTTTC
TTCGTGTCATCCTCGGAAAAAAAAAAACTTTCTGCATGCAAAATATTGGCACATCATTCA
AGCGAACATTTCTCTAGCTCTTGAGGTTGCAGATCTCTGTTCCTTGTGGAGACGCCCAGT
CTCATGCCGACGGAGACGAGAGTTTCCAGTGATCTGGCACTATTGGCCAGAAGATCAGCG
TCAAATTCTATTGCATCCTTCTCAAAGACGCATATTACTGTGCTCCCTCCAAAAGCGAAA
TATCCAAACTCATCTCCTTTGTGGACGTAGTCACCCTCTTCTTTCAAGAACTCGATGCTT
CCAACCATTGTTGCTCCAATGGCCACGAATGCCACCTTTCCAAACTCTGAAGTTGAGATT
ATTGAAACAACTCGTTTGTTCTCGGTGAAAACATTACAATATTTGCTGTTCACAGCAATA
GGATTGACCGTGTACAAGCATCCAGGAATTTCCACAAATTTCTCCAAAGTTCCTGAGACG
GGAACATGAAACCTATGGTAATCCTGAGGCGCAAGCCGAAAGATTACCAATGATCCATTG
CACAAAGCATCAGAGTGTACATCCTTCCCAAGGAGACCCTCGAT

consensusID : consensus_5772#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 600
fasta sequence

                              [GATACGCTACGTAACGGCATGACTTTGTTTTTTTTTTTTTTTTTTTTTTTTTAGCAGTGCTAAGCATCACTGAACACTGATTAACTGTAATCCTAACAAAGATACAGTGACTGTAAGGTATGGGGGACAAAAATTCAAACATGAATTGTGTCCCGATGTACACTTTCTTTACAGAATTCACAGAGTGGATCCAATCATCCAAACAAGAAGCCAACTATTAACACAACCTATTGAACTAACATAAGCATGGAAGCTGCTACTTTCAACCTTTCTTCGTGTCATCCTCGGAAAAAAAAAACTTCCTGCATGCAAAATATTGGCACATCATTCAAGCGAACATTTCTCTAGCTCTTGAGGTTGCAAATCGCTGTTCCTTGTGGAGACGCCCAGTCTCATGCCGACGGAGACGAAAGTTTCCAGTGATCTGGCACTATTGGCCAAAAGATCAGCGTCAAATTCTATTGCATCCTTCTCAAAGACGCATATTACTGTGCTCCCTCCAAAAGCGAAATATCCAAACTCATCTCCTTTGTGGACGTAGTCACCCTCTTCTTTCAAGAACTCGATGCTTCCAACCATTGTTGCTCCAATGGCCACGAA]

[+] EMBL CF277981             [GATACGCTACGTAACGGCATGACTTTGTTTTTTTTTTTTTTTTTTTTTTTTTAGCAGTGCTAAGCATCACTGAACACTGATTAACTGTAATCCTAACAAAGATACAGTGACTGTAAGGTATGGGGGACAAAAATTCAAACATGAATTGTGTCCCGATGTACACTTTCTTTACAGAATTCACAGAGTGGATCCAATCATCCAAACAAGAAGCCAACTATTAACACAACCTATTGAACTAACATAAGCATGGAAGCTGCTACTTTCAACCTTTCTTCGTGTCATCCTCGGAAAAAAAAAACTTCCTGCATGCAAAATATTGGCACATCATTCAAGCGAACATTTCTCTAGCTCTTGAGGTTGCAAATCGCTGTTCCTTGTGGAGACGCCCAGTCTCATGCCGACGGAGACGAAAGTTTCCAGTGATCTGGCACTATTGGCCAAAAGATCAGCGTCAAATTCTATTGCATCCTTCTCAAAGACGCATATTACTGTGCTCCCTCCAAAAGCGAAATATCCAAACTCATCTCCTTTGTGGACGTAGTCACCCTCTTCTTTCAAGAACTCGATGCTTCCAACCATTGTTGCTCCAATGGCCACGAA]




>consensus_5772#1
GATACGCTACGTAACGGCATGACTTTGTTTTTTTTTTTTTTTTTTTTTTTTTAGCAGTGC
TAAGCATCACTGAACACTGATTAACTGTAATCCTAACAAAGATACAGTGACTGTAAGGTA
TGGGGGACAAAAATTCAAACATGAATTGTGTCCCGATGTACACTTTCTTTACAGAATTCA
CAGAGTGGATCCAATCATCCAAACAAGAAGCCAACTATTAACACAACCTATTGAACTAAC
ATAAGCATGGAAGCTGCTACTTTCAACCTTTCTTCGTGTCATCCTCGGAAAAAAAAAACT
TCCTGCATGCAAAATATTGGCACATCATTCAAGCGAACATTTCTCTAGCTCTTGAGGTTG
CAAATCGCTGTTCCTTGTGGAGACGCCCAGTCTCATGCCGACGGAGACGAAAGTTTCCAG
TGATCTGGCACTATTGGCCAAAAGATCAGCGTCAAATTCTATTGCATCCTTCTCAAAGAC
GCATATTACTGTGCTCCCTCCAAAAGCGAAATATCCAAACTCATCTCCTTTGTGGACGTA
GTCACCCTCTTCTTTCAAGAACTCGATGCTTCCAACCATTGTTGCTCCAATGGCCACGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5772#0      ------------------------------------------------------------
consensus_5772#1      GATACGCTACGTAACGGCATGACTTTGTTTTTTTTTTTTTTTTTTTTTTTTTAGCAGTGC 60
                                                                                  

consensus_5772#0      ------------------------------TCCCTATAGGAGGGT--TAGCCGCAAGATC 28
consensus_5772#1      TAAGCATCACTGAACACTGATTAACTGTAATCCTAACAAAGATACAGTGACTGTAAGGT- 119
                                                    ***  * *         *  * * *** * 

consensus_5772#0      ATATTTTGTGTTCCCTCTAACA-GAATCGTGTCCCGATGTACATTTTCTTTACAGAATTC 87
consensus_5772#1      ATGGGGGACAAAAATTCAAACATGAATTGTGTCCCGATGTACACTTTCTTTACAGAATTC 179
                      **             ** **** **** *************** ****************

consensus_5772#0      ACAGAGTGGATCCAATCATCCAAACAAGAAGCCAACTATTAACACAACCTATTGAACTAA 147
consensus_5772#1      ACAGAGTGGATCCAATCATCCAAACAAGAAGCCAACTATTAACACAACCTATTGAACTAA 239
                      ************************************************************

consensus_5772#0      CATAAGCATGGAAGCTGCTACTTTCAACCTTTCTTCGTGTCATCCTCGGAAAAAAAAAAA 207
consensus_5772#1      CATAAGCATGGAAGCTGCTACTTTCAACCTTTCTTCGTGTCATCCTCGGAAAAAAAAAA- 298
                      *********************************************************** 

consensus_5772#0      CTTTCTGCATGCAAAATATTGGCACATCATTCAAGCGAACATTTCTCTAGCTCTTGAGGT 267
consensus_5772#1      CTTCCTGCATGCAAAATATTGGCACATCATTCAAGCGAACATTTCTCTAGCTCTTGAGGT 358
                      *** ********************************************************

consensus_5772#0      TGCAGATCTCTGTTCCTTGTGGAGACGCCCAGTCTCATGCCGACGGAGACGAGAGTTTCC 327
consensus_5772#1      TGCAAATCGCTGTTCCTTGTGGAGACGCCCAGTCTCATGCCGACGGAGACGAAAGTTTCC 418
                      **** *** ******************************************* *******

consensus_5772#0      AGTGATCTGGCACTATTGGCCAGAAGATCAGCGTCAAATTCTATTGCATCCTTCTCAAAG 387
consensus_5772#1      AGTGATCTGGCACTATTGGCCAAAAGATCAGCGTCAAATTCTATTGCATCCTTCTCAAAG 478
                      ********************** *************************************

consensus_5772#0      ACGCATATTACTGTGCTCCCTCCAAAAGCGAAATATCCAAACTCATCTCCTTTGTGGACG 447
consensus_5772#1      ACGCATATTACTGTGCTCCCTCCAAAAGCGAAATATCCAAACTCATCTCCTTTGTGGACG 538
                      ************************************************************

consensus_5772#0      TAGTCACCCTCTTCTTTCAAGAACTCGATGCTTCCAACCATTGTTGCTCCAATGGCCACG 507
consensus_5772#1      TAGTCACCCTCTTCTTTCAAGAACTCGATGCTTCCAACCATTGTTGCTCCAATGGCCACG 598
                      ************************************************************

consensus_5772#0      AATGCCACCTTTCCAAACTCTGAAGTTGAGATTATTGAAACAACTCGTTTGTTCTCGGTG 567
consensus_5772#1      AA---------------------------------------------------------- 600
                      **                                                          

consensus_5772#0      AAAACATTACAATATTTGCTGTTCACAGCAATAGGATTGACCGTGTACAAGCATCCAGGA 627
consensus_5772#1      ------------------------------------------------------------
                                                                                  

consensus_5772#0      ATTTCCACAAATTTCTCCAAAGTTCCTGAGACGGGAACATGAAACCTATGGTAATCCTGA 687
consensus_5772#1      ------------------------------------------------------------
                                                                                  

consensus_5772#0      GGCGCAAGCCGAAAGATTACCAATGATCCATTGCACAAAGCATCAGAGTGTACATCCTTC 747
consensus_5772#1      ------------------------------------------------------------
                                                                                  

consensus_5772#0      CCAAGGAGACCCTCGAT 764
consensus_5772#1      -----------------