cluster # 578

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Oryza sativa
cluster # 578 cluster # 578 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_578#0 length = 681 sequences # 1

consensus_578#1 length = 571 sequences # 1

consensusID : consensus_578#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence

                              [GCCTGCCCTTGCCGGTGATCTGATCGATATCGGCAGTCAGCCATACATCGATCGAGCGGCAAAGCGCCTATAGCTGCTGCAAGACATGTCGGACGGCACGGCCAACTGCATCGACATCCTCATCGCCATCATCCTCCCTCCTCTCGGCGTCTTCCTCAAGTTCGGATGCAAGGTGGAGTTCTGGCTCTGTCTTCTGCTCACCTTCTTCGGCTATCTCCCGGGGATCATCTACGCGGTCTATGCTATCACCAAGCCTCTGGGCTACTTCACGTCATAAGGGAGAAGAATTCTTGTGCAATCAGTGTTGAGTGCTTTGCCGACCTTTCATCTAACTGCCCTTCAAGCTCCCAAATGGGTAATCAGTAGAATAGATCGTTACCGCAGATCCTTCTTATGGAAGGGAGAAGACCCTGACAAAACAAATCCGGGAAGTAGCTTGGTAAATTGGGTACAGTCTGTACACCAAAAATTTTAGGAGGCCTTGGAATTCCAGACCTTGAGAAATTTTTTCGCGCTCTAAGACTACGGTGGCTCTGGTTCAAATGGAAAGAGGACAACAAGCCTTGGGTTGGAATGGATTTACCTTGCGATGACTGCGACAAAAGACTCTTTCAGGCTGCCACTACGATAAATGTCGGCAATGGAGAAAAAATAAATTTTTGGCATGATAAGTGGCTGCAA]

[+] EMBL CB678398             [GCCTGCCCTTGCCGGTGATCTGATCGATATCGGCAGTCAGCCATACATCGATCGAGCGGCAAAGCGCCTATAGCTGCTGCAAGACATGTCGGACGGCACGGCCAACTGCATCGACATCCTCATCGCCATCATCCTCCCTCCTCTCGGCGTCTTCCTCAAGTTCGGATGCAAGGTGGAGTTCTGGCTCTGTCTTCTGCTCACCTTCTTCGGCTATCTCCCGGGGATCATCTACGCGGTCTATGCTATCACCAAGCCTCTGGGCTACTTCACGTCATAAGGGAGAAGAATTCTTGTGCAATCAGTGTTGAGTGCTTTGCCGACCTTTCATCTAACTGCCCTTCAAGCTCCCAAATGGGTAATCAGTAGAATAGATCGTTACCGCAGATCCTTCTTATGGAAGGGAGAAGACCCTGACAAAACAAATCCGGGAAGTAGCTTGGTAAATTGGGTACAGTCTGTACACCAAAAATTTTAGGAGGCCTTGGAATTCCAGACCTTGAGAAATTTTTTCGCGCTCTAAGACTACGGTGGCTCTGGTTCAAATGGAAAGAGGACAACAAGCCTTGGGTTGGAATGGATTTACCTTGCGATGACTGCGACAAAAGACTCTTTCAGGCTGCCACTACGATAAATGTCGGCAATGGAGAAAAAATAAATTTTTGGCATGATAAGTGGCTGCAA]




>consensus_578#0
GCCTGCCCTTGCCGGTGATCTGATCGATATCGGCAGTCAGCCATACATCGATCGAGCGGC
AAAGCGCCTATAGCTGCTGCAAGACATGTCGGACGGCACGGCCAACTGCATCGACATCCT
CATCGCCATCATCCTCCCTCCTCTCGGCGTCTTCCTCAAGTTCGGATGCAAGGTGGAGTT
CTGGCTCTGTCTTCTGCTCACCTTCTTCGGCTATCTCCCGGGGATCATCTACGCGGTCTA
TGCTATCACCAAGCCTCTGGGCTACTTCACGTCATAAGGGAGAAGAATTCTTGTGCAATC
AGTGTTGAGTGCTTTGCCGACCTTTCATCTAACTGCCCTTCAAGCTCCCAAATGGGTAAT
CAGTAGAATAGATCGTTACCGCAGATCCTTCTTATGGAAGGGAGAAGACCCTGACAAAAC
AAATCCGGGAAGTAGCTTGGTAAATTGGGTACAGTCTGTACACCAAAAATTTTAGGAGGC
CTTGGAATTCCAGACCTTGAGAAATTTTTTCGCGCTCTAAGACTACGGTGGCTCTGGTTC
AAATGGAAAGAGGACAACAAGCCTTGGGTTGGAATGGATTTACCTTGCGATGACTGCGAC
AAAAGACTCTTTCAGGCTGCCACTACGATAAATGTCGGCAATGGAGAAAAAATAAATTTT
TGGCATGATAAGTGGCTGCAA

consensusID : consensus_578#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 571
fasta sequence

                              [GGTGGAGTTCTGGCTCTGTCTTCTGCTCACCTTCTTCGGCTATCTCCCGGGGATCATCTACGCGGTCTATGCTATCACCAAGTAGTAGTTACATCTCATCTTTACTATACATCTAAGGTGATTGAAGCTAGCTAGTAGTACTAGTGAAACCTGTCTTGCGTCTATGTATCGATTCATGTGGTCTACGTACGTACTGGATCTCAACTACTTGATCTGTATCGGTTCATGATCAGGCCTCTGGGCTACTTCACGTCATAAGGGAGAAGAATTCTTGTGCAATCAGTGTTGAGTGCTTTGCCGACCTTTCATCTAACTGCCCTTCAAGCTCCCAAATGGGTAATCAGTAGAATAGATCGTTACCGCAGATCCTTCTTATGGAAGGGAGAAGACCCTGACAAAACAAATCCGGGAAGTAGCTTGGTAAATTGGGTACAGTCTGTAGACCAAAAATTTTAGGAGGCCTTGGAATTCCAGACCTTGAGAAATTTTTTCGCGCTCTAAGACTACGGTGGCTCTGGTTCAAATGGAAAGAGGACAACAAGCCTTGGGTTGGAATGGATTTACCTTGCGA]

[+] EMBL AK058343             [GGTGGAGTTCTGGCTCTGTCTTCTGCTCACCTTCTTCGGCTATCTCCCGGGGATCATCTACGCGGTCTATGCTATCACCAAGTAGTAGTTACATCTCATCTTTACTATACATCTAAGGTGATTGAAGCTAGCTAGTAGTACTAGTGAAACCTGTCTTGCGTCTATGTATCGATTCATGTGGTCTACGTACGTACTGGATCTCAACTACTTGATCTGTATCGGTTCATGATCAGGCCTCTGGGCTACTTCACGTCATAAGGGAGAAGAATTCTTGTGCAATCAGTGTTGAGTGCTTTGCCGACCTTTCATCTAACTGCCCTTCAAGCTCCCAAATGGGTAATCAGTAGAATAGATCGTTACCGCAGATCCTTCTTATGGAAGGGAGAAGACCCTGACAAAACAAATCCGGGAAGTAGCTTGGTAAATTGGGTACAGTCTGTAGACCAAAAATTTTAGGAGGCCTTGGAATTCCAGACCTTGAGAAATTTTTTCGCGCTCTAAGACTACGGTGGCTCTGGTTCAAATGGAAAGAGGACAACAAGCCTTGGGTTGGAATGGATTTACCTTGCGA]




>consensus_578#1
GGTGGAGTTCTGGCTCTGTCTTCTGCTCACCTTCTTCGGCTATCTCCCGGGGATCATCTA
CGCGGTCTATGCTATCACCAAGTAGTAGTTACATCTCATCTTTACTATACATCTAAGGTG
ATTGAAGCTAGCTAGTAGTACTAGTGAAACCTGTCTTGCGTCTATGTATCGATTCATGTG
GTCTACGTACGTACTGGATCTCAACTACTTGATCTGTATCGGTTCATGATCAGGCCTCTG
GGCTACTTCACGTCATAAGGGAGAAGAATTCTTGTGCAATCAGTGTTGAGTGCTTTGCCG
ACCTTTCATCTAACTGCCCTTCAAGCTCCCAAATGGGTAATCAGTAGAATAGATCGTTAC
CGCAGATCCTTCTTATGGAAGGGAGAAGACCCTGACAAAACAAATCCGGGAAGTAGCTTG
GTAAATTGGGTACAGTCTGTAGACCAAAAATTTTAGGAGGCCTTGGAATTCCAGACCTTG
AGAAATTTTTTCGCGCTCTAAGACTACGGTGGCTCTGGTTCAAATGGAAAGAGGACAACA
AGCCTTGGGTTGGAATGGATTTACCTTGCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_578#0      GCCTGCCCTTGCCGGTGATCTGATCGATATCGGCAGTCAGCCATACATCGATCGAGCGGC 60
consensus_578#1      ----------GGTGGAGTTCTGGCTC-TGTCTTCTGCTCACCTT-CTTCGGCTATCTCCC 48
                               *  ** * ****     * **  * *    ** * * ***         *

consensus_578#0      AAAGCGCCTATAGCTGCTGCAAGACATGTCGGACGGCACGGCCAACTGCATCGACATCCT 120
consensus_578#1      GGGGATCATCTACGCGGTCTATGCTAT-----------CACCAAGTAGTAGTTACATC-T 96
                        *  * * **   * *  * *  **           *  * *   * *   ***** *

consensus_578#0      CATCGCCATCATCCTCCCTCCTC--TCGGCGTCTTCCTCAAGTTCGGATGCAAGGTGGAG 178
consensus_578#1      CATCTTTACTATACATCTAAGGTGATTGAAGCTAGCTAGTAGTACTAGTGAAACCTG--- 153
                     ****   *  ** *  *        * *  *    *    *** *   ** **  **   

consensus_578#0      TTCTGGCTCTGTCT-TCTGCTCACCTTCTTCGGCTATCTCCCGGGGATCATCTACGCGGT 237
consensus_578#1      TCTTGCGTCTATGTATCGATTCATGTGGTCTACGTACGTACTGGATCTCAACTACTTGAT 213
                     *  **  *** * * **   ***  *  *     **  * * **   *** ****  * *

consensus_578#0      CTATGCT-----ATCACCAAGCCTCTGGGCTACTTCACGTCATAAGGGAGAAGAATTCTT 292
consensus_578#1      CTGTATCGGTTCATGATCAGGCCTCTGGGCTACTTCACGTCATAAGGGAGAAGAATTCTT 273
                     ** *        ** * ** ****************************************

consensus_578#0      GTGCAATCAGTGTTGAGTGCTTTGCCGACCTTTCATCTAACTGCCCTTCAAGCTCCCAAA 352
consensus_578#1      GTGCAATCAGTGTTGAGTGCTTTGCCGACCTTTCATCTAACTGCCCTTCAAGCTCCCAAA 333
                     ************************************************************

consensus_578#0      TGGGTAATCAGTAGAATAGATCGTTACCGCAGATCCTTCTTATGGAAGGGAGAAGACCCT 412
consensus_578#1      TGGGTAATCAGTAGAATAGATCGTTACCGCAGATCCTTCTTATGGAAGGGAGAAGACCCT 393
                     ************************************************************

consensus_578#0      GACAAAACAAATCCGGGAAGTAGCTTGGTAAATTGGGTACAGTCTGTACACCAAAAATTT 472
consensus_578#1      GACAAAACAAATCCGGGAAGTAGCTTGGTAAATTGGGTACAGTCTGTAGACCAAAAATTT 453
                     ************************************************ ***********

consensus_578#0      TAGGAGGCCTTGGAATTCCAGACCTTGAGAAATTTTTTCGCGCTCTAAGACTACGGTGGC 532
consensus_578#1      TAGGAGGCCTTGGAATTCCAGACCTTGAGAAATTTTTTCGCGCTCTAAGACTACGGTGGC 513
                     ************************************************************

consensus_578#0      TCTGGTTCAAATGGAAAGAGGACAACAAGCCTTGGGTTGGAATGGATTTACCTTGCGATG 592
consensus_578#1      TCTGGTTCAAATGGAAAGAGGACAACAAGCCTTGGGTTGGAATGGATTTACCTTGCGA-- 571
                     **********************************************************  

consensus_578#0      ACTGCGACAAAAGACTCTTTCAGGCTGCCACTACGATAAATGTCGGCAATGGAGAAAAAA 652
consensus_578#1      ------------------------------------------------------------
                                                                                 

consensus_578#0      TAAATTTTTGGCATGATAAGTGGCTGCAA 681
consensus_578#1      -----------------------------