These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5787#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 633 fasta sequence [GGCTTCTCCTCCCCCTCCCGGNTCGGTTCGGNTCNGGTCCGGTTCGATTTCGTTTTTTTTTCTTCTTCGTGGGGTTGGTGGGAAAGCATGGCGGCGCCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGNCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCANCTTCGGCGAGATCCTCGAGTCCAAGGTCCGATGGATTGATTCCCTCTTCTCTGTGTTTTTTTGGATGTGATTTGGTGGTGGTGTTCTTCAGATCTGGTTGCGTAGATCTGACTATGGGGGTTGTGGTATGCGGTGCAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTCAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCGGAGGCGGCTACGGCCAGCGCGGCGGAGGCGGAGGCTACGGTGGCGGCGGCGGCTACGGTGGTGGCGGCGGCGGTGGCTACGGCCAGCGCCGTGAAGGCGGCTACGGCGGTGGCGGCGGCTACTGTGGCGGCCGTGGCGGCGGCGGCGGCTACG] [+] EMBL AU057889 [GGCTTCTCCTCCCCCTCCCGGNTCGGTTCGGNTCNGGTCCGGTTCGATTTCGTTTTTTTTTCTTCTTCGTGGGGTTGGTGGGAAAGCATGGCGGCGCCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGNCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCANCTTCGGCGAGATCCTCGAGTCCAAGGTCCGATGGATTGATTCC ] [+] EMBL CB661824 [ CCCCTCCCGGTTCGGTTCGGTTCGGGTCCGGTTCGATTTCGTTTTTTTTTCTTCTTCGTGGGGTTGGTGGGAAAGCATGGCCGCGCCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTTCGGCGAGATCCTCGAGTCCAAGGTCCGATGGATTGATTCCCTCTTCTCTGTGTTTTTTTGGATGTGATTTGGTGGTGGTGTTCTTCAGATCTGGTTGCGTAGATCTGACTATGGGGGTTGTGGTATGCGGTGCAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTCAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCGGAGGCGGCTACGGCCAGCGCGGCGGAGGCGGAGGCTACGGTGGCGGCGGCGGCTACGGTGGTGGCGGCGGCGGTGGCTACGGCCAGCGCCGTGAAGGCGGCTACGGCGGTGGCGGCGGCTACTGTGGCGGCCGTGGCGGCGGCGGCGGCTACG] consensusID : consensus_5787#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [CCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTCAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCGGAGGCGGCTACGGCCAGCGCGGCGGAGGCGGAGGCTACGGTGGCGGCGGCGGCTACGGTGGTGGCGGCGGCGGTGGCTACGGCCAGCGCCGTGAAGGCGGCTACGGCGGTGGCGGCGGCTACGGTGGCGGCCGTGGCGGCGGCGGCGGCTACGGCGGTGGCTACGGCAGCCGCGGCGGCGGCAACTCCGACGGGAACTGGAGGAACTGAGCGGTGGGGCCCTCATGGCCAAGTTATCTATCTATCTAATCGAGCTACCATCATCATCATCCGATCGTTATCATCGTTAGTTTTGTGTGGAACTACTATCTAGTTTGTGTTAAAAAAAAAAAAAAAAAAAACCCTGTGCCGAATCGGCACGAG] [-] EMBL CF326001 [CCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTCAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCGGAGGCGGCTACGGCCAGCGCGGCGGAGGCGGAGGCTACGGTGGCGGCGGCGGCTACGGTGGTGGCGGCGGCGGTGGCTACGGCCAGCGCCGTGAAGGCGGCTACGGCGGTGGCGGCGGCTACGGTGGCGGCCGTGGCGGCGGCGGCGGCTACGGCGGTGGCTACGGCAGCCGCGGCGGCGGCAACTCCGACGGGAACTGGAGGAACTGAGCGGTGGGGCCCTCATGGCCAAGTTATCTATCTATCTAATCGAGCTACCATCATCATCATCCGATCGTTATCATCGTTAGTTTTGTGTGGAACTACTATCTAGTTTGTGTTAAAAAAAAAAAAAAAAAAAACCCTGTGCCGAATCGGCACGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5787#0 GGCTTCTCCTCCCCCTCCCGGNTCGGTTCGGNTCNGGTCCGGTTCGATTTCGTTTTTTTT 60 consensus_5787#1 ------------------------------------------------------------ consensus_5787#0 TCTTCTTCGTGGGGTTGGTGGGAAAGCATGGCGGCGCCGGATGTTGAGTACCGCTGCTTC 120 consensus_5787#1 ------------------------------------------------------------ consensus_5787#0 GTCGGCGGCCTCGCCTGGNCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCANCTTC 180 consensus_5787#1 ------------------------------------------------------------ consensus_5787#0 GGCGAGATCCTCGAGTCCAAGGTCCGATGGATTGATTCCCTCTTCTCTGTGTTTTTTTGG 240 consensus_5787#1 ------------------------------------------------------------ consensus_5787#0 ATGTGATTTGGTGGTGGTGTTCTTCAGATCTGGTTGCGTAGATCTGACTATGGGGGTTGT 300 consensus_5787#1 ------------------------------------------------------------ consensus_5787#0 GGTATGCGGTGCAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCG 360 consensus_5787#1 -CCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCG 59 * * ************************************************ consensus_5787#0 TGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGC 420 consensus_5787#1 TGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGC 119 ************************************************************ consensus_5787#0 TCGACGGCCGCAACATCACCGTCAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCG 480 consensus_5787#1 TCGACGGCCGCAACATCACCGTCAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCG 179 ************************************************************ consensus_5787#0 GAGGCGGCTACGGCCAGCGCGGCGGAGGCGGAGGCTACGGTGGCGGCGGCGGCTACGGTG 540 consensus_5787#1 GAGGCGGCTACGGCCAGCGCGGCGGAGGCGGAGGCTACGGTGGCGGCGGCGGCTACGGTG 239 ************************************************************ consensus_5787#0 GTGGCGGCGGCGGTGGCTACGGCCAGCGCCGTGAAGGCGGCTACGGCGGTGGCGGCGGCT 600 consensus_5787#1 GTGGCGGCGGCGGTGGCTACGGCCAGCGCCGTGAAGGCGGCTACGGCGGTGGCGGCGGCT 299 ************************************************************ consensus_5787#0 ACTGTGGCGGCCGTGGCGGCGGCGGCGGCTACG--------------------------- 633 consensus_5787#1 ACGGTGGCGGCCGTGGCGGCGGCGGCGGCTACGGCGGTGGCTACGGCAGCCGCGGCGGCG 359 ** ****************************** consensus_5787#0 ------------------------------------------------------------ consensus_5787#1 GCAACTCCGACGGGAACTGGAGGAACTGAGCGGTGGGGCCCTCATGGCCAAGTTATCTAT 419 consensus_5787#0 ------------------------------------------------------------ consensus_5787#1 CTATCTAATCGAGCTACCATCATCATCATCCGATCGTTATCATCGTTAGTTTTGTGTGGA 479 consensus_5787#0 ------------------------------------------------------------ consensus_5787#1 ACTACTATCTAGTTTGTGTTAAAAAAAAAAAAAAAAAAAACCCTGTGCCGAATCGGCACG 539 consensus_5787#0 -- consensus_5787#1 AG 541 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||