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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5792#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1368 fasta sequence
[ACACACATGCCCGTCCTGCCATGGCTCGCGGCGGCGGCGACGACGCCCGTGCGCCGGTCGCCGCCGCTCCCCGCTACTCCGCGTGCCCTGCTCCGACTGCCGGCCTCTTCCTTCCCTCCCTGGAGCAACTGCGCGAAGAGCGGGCTCCCGCCGCGGGGGCCATTCGCCACCGCCGCTGACACCCCCCTCGGGGGTTCGCTCCCTGAGCCCGAGGAGGAGCGCGACACGCTCCTCGACGGCGCGCTCCGGGCCGCACGATTCCGCGACGAGGAGTCCCGCCGCCCAGATCCTCTTTTTATTGACCCATATGCAGCTGTTCTACTTTCACTTGATGTGGCAAGTGAAGATAAAGATCTTCTAGCTTTACATTTAATGCCAAGTGCAGAACATTATAGGCTAGTGACCAGATATATTGATGACAAATTGCAACATTTCATAAGCAATTCAGATGATCTTAGACAGATTGTTCTGTTGACAGATGGAATGGACACTCGTCCTTACAGGCTAAGCTGGCCAAGGTTGTCTGTTGTGTATGATGTATCACCTAGAAGAGTCTTCATTACTGCATCACAGCAACTCAGAGGAGCCGGAGCAAAAATATCACGGAACTGTGTTGTACTTCATACTTCTTCAGAGTCTCCTGACTTGCAAGCGGGCTTGAATAAAAATGGCTTCAATGGGAATAGGCCGAGCTTGTGGGTACTGCAGGGTTTACCTTTGTTCACTTTTAAAAGCTTGGAGGACCTTTTGCTTGTCATTGGCAATTTAGCAATGAAAGGGAGTATCTTTATAGGGGAGGTGCCACGTTTTACGCAGTGGGGAGCAGCAACAGACATGGCCTCAGAGCAAGACAGGCTGGAAAACCTTTCCTTTACTCAGGGTTTTCGTGTCAGCTTTGTTCACTATGAAGAAGTGGCAAAGGATGTTGGCTTAGGTCTAGACTCTCCACCGGAAATACATGGTAGAGCTATTTTTATTGCAGAACAGCTGCGTTTCTCAGATGCTCAGATGGAGAGCTTCCGGATGCATTTTGAAAGAATAGAGGATGATGCCGATGAAGACGGATTCGAGGAACTTTAGTCCAATCTATGATGCTTGATGGCTCTTGAAAAATGATGCTCGATGTACTTGAAACTTGAGAATGTTTTTGACTTGTGTGGGATTGGGAATATACCCTGGAAAGAGAGAGCCTGTAAATGTATGCATTAGATTGTATTCTTCAAAACAGATGTATGCATTAGATTCTTGCGAGCAGAAAGTTTCCGTATGGAAACATGTAATAATCGGCATGTTTTTCTGTCACCATTTATATGGCTATATGTTTACTGGGATGTCTCAGATATCTGTGATTGCCACATATTTATGAAT]
[+] EMBL AK068864 [ACACACATGCCCGTCCTGCCATGGCTCGCGGCGGCGGCGACGACGCCCGTGCGCCGGTCGCCGCCGCTCCCCGCTACTCCGCGTGCCCTGCTCCGACTGCCGGCCTCTTCCTTCCCTCCCTGGAGCAACTGCGCGAAGAGCGGGCTCCCGCCGCGGGGGCCATTCGCCACCGCCGCTGACACCCCCCTCGGGGGTTCGCTCCCTGAGCCCGAGGAGGAGCGCGACACGCTCCTCGACGGCGCGCTCCGGGCCGCACGATTCCGCGACGAGGAGTCCCGCCGCCCAGATCCTCTTTTTATTGACCCATATGCAGCTGTTCTACTTTCACTTGATGTGGCAAGTGAAGATAAAGATCTTCTAGCTTTACATTTAATGCCAAGTGCAGAACATTATAGGCTAGTGACCAGATATATTGATGACAAATTGCAACATTTCATAAGCAATTCAGATGATCTTAGACAGATTGTTCTGTTGACAGATGGAATGGACACTCGTCCTTACAGGCTAAGCTGGCCAAGGTTGTCTGTTGTGTATGATGTATCACCTAGAAGAGTCTTCATTACTGCATCACAGCAACTCAGAGGAGCCGGAGCAAAAATATCACGGAACTGTGTTGTACTTCATACTTCTTCAGAGTCTCCTGACTTGCAAGCGGGCTTGAATAAAAATGGCTTCAATGGGAATAGGCCGAGCTTGTGGGTACTGCAGGGTTTACCTTTGTTCACTTTTAAAAGCTTGGAGGACCTTTTGCTTGTCATTGGCAATTTAGCAATGAAAGGGAGTATCTTTATAGGGGAGGTGCCACGTTTTACGCAGTGGGGAGCAGCAACAGACATGGCCTCAGAGCAAGACAGGCTGGAAAACCTTTCCTTTACTCAGGGTTTTCGTGTCAGCTTTGTTCACTATGAAGAAGTGGCAAAGGATGTTGGCTTAGGTCTAGACTCTCCACCGGAAATACATGGTAGAGCTATTTTTATTGCAGAACAGCTGCGTTTCTCAGATGCTCAGATGGAGAGCTTCCGGATGCATTTTGAAAGAATAGAGGATGATGCCGATGAAGACGGATTCGAGGAACTTTAGTCCAATCTATGATGCTTGATGGCTCTTGAAAAATGATGCTCGATGTACTTGAAACTTGAGAATGTTTTTGACTTGTGTGGGATTGGGAATATACCCTGGAAAGAGAGAGCCTGTAAATGTATGCATTAGATTGTATTCTTCAAAACAGATGTATGCATTAGATTCTTGCGAGCAGAAAGTTTCCGTATGGAAACATGTAATAATCGGCATGTTTTTCTGTCACCATTTATATGGCTATATGTTTACTGGGATGTCTCAGATATCTGTGATTGCCACATATTTATGAAT]
consensusID : consensus_5792#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence
[AGAGTCTCCTGACTTGCAAGCGGGCTTGAATAAAAATGGCTTCAATGGGAATAGGCCGAGCTTGTGGGTACTGCAGGGTTTACCTTTGTTCACTTTTAAAAGCTTGGAGGACCTTTTGCTTGTCATTGGCAATTTAGCAATGAAAGGGAGTATCTTTATAGGGGAGGTGCCACGTTTTACGCAGTGGGGAGCATCAGCAGACATGGCCTCAGAGCAAGACAGGCTGGAAAACCTTTTCTTTACTCAGGGTTTTCGTGTCAGCTTTGTTCACTATGAAGAAGTGGCAAAGGATGTTGGCTTAGGTCTAGACTCTCCACCGGAAATACATGGTAGAGCTCTTTTTATTGCAGAACAGCTGCGTTTCTCAGATGCTCAGGTAATGAAACCAACTCTATTCCTTCGACATGGATTCTAACTTCAATGATTCTGGGGGTTGGCGTGAGCTCTAAANAATATCACTCTCACATCTGGAAATTGCCCATAACCTTTTGAT]
[+] EMBL CF197062 [AGAGTCTCCTGACTTGCAAGCGGGCTTGAATAAAAATGGCTTCAATGGGAATAGGCCGAGCTTGTGGGTACTGCAGGGTTTACCTTTGTTCACTTTTAAAAGCTTGGAGGACCTTTTGCTTGTCATTGGCAATTTAGCAATGAAAGGGAGTATCTTTATAGGGGAGGTGCCACGTTTTACGCAGTGGGGAGCATCAGCAGACATGGCCTCAGAGCAAGACAGGCTGGAAAACCTTTTCTTTACTCAGGGTTTTCGTGTCAGCTTTGTTCACTATGAAGAAGTGGCAAAGGATGTTGGCTTAGGTCTAGACTCTCCACCGGAAATACATGGTAGAGCTCTTTTTATTGCAGAACAGCTGCGTTTCTCAGATGCTCAGGTAATGAAACCAACTCTATTCCTTCGACATGGATTCTAACTTCAATGATTCTGGGGGTTGGCGTGAGCTCTAAANAATATCACTCTCACATCTGGAAATTGCCCATAACCTTTTGAT]
consensusID : consensus_5792#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence
[CCGGATGCATTTTGAAAGAATAGAGGATGATGCCGATGAAGACGGATTCGAGGAACTTTAGTCCAATCTATGATGCTTGATGGCTCTTGAAAAATGATGCTCGATGTACTTGAAACTTGAGAATGTTTTTGACTTGTGTGGGATTGGGAATATACCCCTGGAAAGAGAGAGCCTGTAAATGTATGCATTAGATTGTATTCTTCAAAACAGATGTATGCATTAGATTCTTGCGAGCAGAAAGTTTCCGTATGGAAACATGTAATAATCGGCATGTTTTTCTGTCACCATTTATATGGCTATATGTTTACTGGGATGTCTCAGATATCTGTGATTGCCACCAAAAAAAAAA]
[+] EMBL BI806483 [CCGGATGCATTTTGAAAGAATAGAGGATGATGCCGATGAAGACGGATTCGAGGAACTTTAGTCCAATCTATGATGCTTGATGGCTCTTGAAAAATGATGCTCGATGTACTTGAAACTTGAGAATGTTTTTGACTTGTGTGGGATTGGGAATATACCCCTGGAAAGAGAGAGCCTGTAAATGTATGCATTAGATTGTATTCTTCAAAACAGATGTATGCATTAGATTCTTGCGAGCAGAAAGTTTCCGTATGGAAACATGTAATAATCGGCATGTTTTTCTGTCACCATTTATATGGCTATATGTTTACTGGGATGTCTCAGATATCTGTGATTGCCACCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5792#0 ACACACATGCCCGTCCTGCCATGGCTCGCGGCGGCGGCGACGACGCCCGTGCGCCGGTCG 60
consensus_5792#2 ------------------------------------------------------------
consensus_5792#1 ------------------------------------------------------------
consensus_5792#0 CCGCCGCTCCCCGCTACTCCGCGTGCCCTGCTCCGACTGCCGGCCTCTTCCTTCCCTCCC 120
consensus_5792#2 ------------------------------------------------------------
consensus_5792#1 ------------------------------------------------------------
consensus_5792#0 TGGAGCAACTGCGCGAAGAGCGGGCTCCCGCCGCGGGGGCCATTCGCCACCGCCGCTGAC 180
consensus_5792#2 ------------------------------------------------------------
consensus_5792#1 ------------------------------------------------------------
consensus_5792#0 ACCCCCCTCGGGGGTTCGCTCCCTGAGCCCGAGGAGGAGCGCGACACGCTCCTCGACGGC 240
consensus_5792#2 ------------------------------------------------------------
consensus_5792#1 ------------------------------------------------------------
consensus_5792#0 GCGCTCCGGGCCGCACGATTCCGCGACGAGGAGTCCCGCCGCCCAGATCCTCTTTTTATT 300
consensus_5792#2 ------------------------------------------------------------
consensus_5792#1 ------------------------------------------------------------
consensus_5792#0 GACCCATATGCAGCTGTTCTACTTTCACTTGATGTGGCAAGTGAAGATAAAGATCTTCTA 360
consensus_5792#2 ------------------------------------------------------------
consensus_5792#1 ------------------------------------------------------------
consensus_5792#0 GCTTTACATTTAATGCCAAGTGCAGAACATTATAGGCTAGTGACCAGATATATTGATGAC 420
consensus_5792#2 ------------------------------------------------------------
consensus_5792#1 ------------------------------------------------------------
consensus_5792#0 AAATTGCAACATTTCATAAGCAATTCAGATGATCTTAGACAGATTGTTCTGTTGACAGAT 480
consensus_5792#2 ------------------------------------------------------------
consensus_5792#1 ------------------------------------------------------------
consensus_5792#0 GGAATGGACACTCGTCCTTACAGGCTAAGCTGGCCAAGGTTGTCTGTTGTGTATGATGTA 540
consensus_5792#2 ------------------------------------------------------------
consensus_5792#1 ------------------------------------------------------------
consensus_5792#0 TCACCTAGAAGAGTCTTCATTACTGCATCACAGCAACTCAGAGGAGCCGGAGCAAAAATA 600
consensus_5792#2 ------------------------------------------------------------
consensus_5792#1 ------------------------------------------------------------
consensus_5792#0 TCACGGAACTGTGTTGTACTTCATACTTCTTCAGAGTCTCCTGACTTGCAAGCGGGCTTG 660
consensus_5792#2 ------------------------------------------------------------
consensus_5792#1 ------------------------------------------------------------
consensus_5792#0 AATAAAAATGGCTTCAATGGGAATAGGCCGAGCTTGTGGGTACTGCAGGGTTTACCTTTG 720
consensus_5792#2 ------------------------------------------------------------
consensus_5792#1 ------------------------------------------------------------
consensus_5792#0 TTCACTTTTAAAAGCTTGGAGGACCTTTTGCTTGTCATTGGCAATTTAGCAATGAAAGGG 780
consensus_5792#2 ------------------------------------------------------------
consensus_5792#1 ------------------------------------------------------------
consensus_5792#0 AGTATCTTTATAGGGGAGGTGCCACGTTTTACGCAGTGGGGAGCAGCAACAGACATGGCC 840
consensus_5792#2 ------------------------------------------------------------
consensus_5792#1 ------------------------------------------------------------
consensus_5792#0 TCAGAGCAAGACAGGCTGGAAAACCTTTCCTTTACTCAGGGTTTTCGTGTCAGCTTTGTT 900
consensus_5792#2 ------------------------------------------------------------
consensus_5792#1 ------------------------------------------------------------
consensus_5792#0 CACTATGAAGAAGTGGCAAAGGATGTTGGCTTAGGTCTAGACTCTCCACCGGAAATACAT 960
consensus_5792#2 ------------------------------------------------------------
consensus_5792#1 ------------------------------------AGAGTCTCCTGACTTGCAAGCGGG 24
consensus_5792#0 GGTAGAGCTATTTTTATTGCAGAACAGCTGCGTTTCTCAGATGCTCAGATGGAGAGCTTC 1020
consensus_5792#2 -----------------------------------------------------------C 1
consensus_5792#1 CTTGAATAAAAATGGCTTCAATGGGAATAGGCCGAGCTTGTGGGTACTGCAGGGTTTACC 84
*
consensus_5792#0 CGGATGCA-TTTTGAAAGAATAGAGGAT------------GATGCCGATGAAG--ACGGA 1065
consensus_5792#2 CGGATGCA-TTTTGAAAGAATAGAGGAT------------GATGCCGATGAAG--ACGGA 46
consensus_5792#1 TTTGTTCACTTTTAAAAGCTTGGAGGACCTTTTGCTTGTCATTGGCAATTTAGCAATGAA 144
* ** **** **** * ***** ** * ** ** * * *
consensus_5792#0 TTCGAGGAACTTTA--------GTCCAATCTATGATGCTTGATGGCTCTTGAAAAATGAT 1117
consensus_5792#2 TTCGAGGAACTTTA--------GTCCAATCTATGATGCTTGATGGCTCTTGAAAAATGAT 98
consensus_5792#1 AGGGAGTATCTTTATAGGGGAGGTGCCACGTTTTACGCAGTGGGGAGCATCAGCAGACAT 204
*** * ***** ** * * * * * ** ** * * * * **
consensus_5792#0 G--CTCGATGTACTTGAAACTTGAGAATGTTTTTGACTTGTGTGGGATTGGGAATA---- 1171
consensus_5792#2 G--CTCGATGTACTTGAAACTTGAGAATGTTTTTGACTTGTGTGGGATTGGGAATA---- 152
consensus_5792#1 GGCCTCAGAGCAAGACAGGCTGGAAAACCTTTTCTTTACTCAGGGTTTTCGTGTCAGCTT 264
* *** * * * ** ** ** **** ** ** * *
consensus_5792#0 TACCC-TGGAAAGAGAGAGCCTGTAAATGTATGCATTAGATTGTATTCTTCAAAACAGAT 1230
consensus_5792#2 TACCCCTGGAAAGAGAGAGCCTGTAAATGTATGCATTAGATTGTATTCTTCAAAACAGAT 212
consensus_5792#1 TGTTCACTATGAAGAAGTGGCAAAGGATGTTGGCTTAGGTCTAGACTCTCCACCGGAAAT 324
* * * ** * * **** ** * * * * *** ** * **
consensus_5792#0 GTATGCATTAGATTCTTGCGA-GCAGAAAGTTTCCGTATGGAAA-----CATGTAAT--A 1282
consensus_5792#2 GTATGCATTAGATTCTTGCGA-GCAGAAAGTTTCCGTATGGAAA-----CATGTAAT--A 264
consensus_5792#1 ACATGGTAGAGCTCTTTTTATTGCAGAACAGCTGCGTTTCTCAGATGCTCAGGTAATGAA 384
*** ** * ** ****** * *** * * ** ***** *
consensus_5792#0 ATCGGCA-TGTTTTTCTGTCACCATTTATATGGCTATATGTTTACTGGGATGTCTCAGAT 1341
consensus_5792#2 ATCGGCA-TGTTTTTCTGTCACCATTTATATGGCTATATGTTTACTGGGATGTCTCAGAT 323
consensus_5792#1 ACCAACTCTATTCCTTCGACATGGATTCTAACTTCAATGATTCTGGGGGTTGGCGTGAGC 444
* * * * ** * * ** ** ** * ** *** ** *
consensus_5792#0 ATCTGTGATTGCCAC---ATATTTATGAAT------------------- 1368
consensus_5792#2 ATCTGTGATTGCCAC---CAAAAAAAAAA-------------------- 349
consensus_5792#1 TCTAAANAATATCACTCTCACATCTGGAAATTGCCCATAACCTTTTGAT 493
* * *** **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||