Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5797 cluster # 5797       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5797#0 length = 1168 sequences # 2  
consensus_5797#1 length = 747 sequences # 1  

consensusID : consensus_5797#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1168
fasta sequence
                              [ATTATGGCAGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCCTCCCCGCCGGCAGCCAGGACCACATGAACGCGCTCCGCTCCACCGCACTCCGCCGCTCCACCCTGCACTGGGACGCCGCCGCGGCCTTCTTCGCCCCGCCCTTCCGCTCCCGAAGCTGCCGCCGCCGCCGCGTGCCTGCTCCTGCCGCCGCCGCCGAGACGAGGCCCACCAGGTCCCCCTCTAGGGCTAGGGCCAGGGCGCGGGCGAAGCTACTGGCGGACGCCGATACGAGGGACCCCTGGCTGGCCTCCCTCTCGCTGCTCCCGGTCGACGACGGCGAGGCCGCCGCCGCCGCCGCCGCGGCCTCCACCGGCTGGGCGATTGGGGTGGATCCCGATACGGGCGGCGCAATCGCCGTCCTCTCGCCCGACGGGTCCTCGCAGGTGTTTGATAACCCGTTCGTGCACATAGTGGTCTCGGAGTTCATCCGGAAGCGCTTGGACACCAAATCCATCATCGAGCTGCTCCGTGGCCTCGATGCGCCTCCTGGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTGGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTTGCATCTGGTTTTTCAGTTGTTCCAGTTGCATCACAGACCTGGAAGGCTTATTTTGGGCTAACACGAAGCGGATCACCTAAGGACTATAGCAGGCAAGCTGCTTCAATCTTGTTCCCGGACAAGGCCCTGTCCCTGAATAGGAAGAAACATCATGGGCGAGCAGAGGCCCTTTTGTTAGCGGCCTACGGAAAAGGTCTTGTGCTGCCATCAGGGGAGTTCAGCAAAACATTATGACAATCCGACTTTTATAGGGAGGCTTGACTGACTGATCATTTTGAGTGGACTGGTGCAAACATTTTGGTATTTCCCCATGGGCGCCATCAAGTATATAATTGAAGTAAGCCCGGAGGGTGCGTGCACTAGTCCGTTCAATTTTCAGGAACACATTAGCAGTGTACCATTGTGTTTAACAAGCTACTGTAAATGATATTATTGCTGTTTGAACGGTTGATTTGAAGTTGGAAATGAACCGATGATTCTTTTTTTTTTGGGTGAGCGAGATTGTAGCAGTCTTTTTAAGGCTTTTAATTATAAG]

[+] EMBL AK062596             [ATTATGGCAGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCCTCCCCGCCGGCAGCCAGGACCACATGAACGCGCTCCGCTCCACCGCACTCCGCCGCTCCACCCTGCACTGGGACGCCGCCGCGGCCTTCTTCGCCCCGCCCTTCCGCTCCCGAAGCTGCCGCCGCCGCCGCGTGCCTGCTCCTGCCGCCGCCGCCGAGACGAGGCCCACCAGGTCCCCCTCTAGGGCTAGGGCCAGGGCGCGGGCGAAGCTACTGGCGGACGCCGATACGAGGGACCCCTGGCTGGCCTCCCTCTCGCTGCTCCCGGTCGACGACGGCGAGGCCGCCGCCGCCGCCGCCGCGGCCTCCACCGGCTGGGCGATTGGGGTGGATCCCGATACGGGCGGCGCAATCGCCGTCCTCTCGCCCGACGGGTCCTCGCAGGTGTTTGATAACCCGTTCGTGCACATAGTGGTCTCGGAGTTCATCCGGAAGCGCTTGGACACCAAATCCATCATCGAGCTGCTCCGTGGCCTCGATGCGCCTCCTGGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTGGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTTGCATCTGGTTTTTCAGTTGTTCCAGTTGCATCACAGACCTGGAAGGCTTATTTTGGGCTAACACGAAGCGGATCACCTAAGGACTATAGCAGGCAAGCTGCTTCAATCTTGTTCCCGGACAAGGCCCTGTCCCTGAATAGGAAGAAACATCATGGGCGAGCAGAGGCCCTTTTGTTAGCGGCCTACGGAAAAGGTCTTGTGCTGCCATCAGGGGAGTTCAGCAAAACATTATGACAATCCGACTTTTATAGGGAGGCTTGACTGACTGATCATTTTGAGTGGACTGGTGCAAACATTTTGGTATTTCCCCATGGGCGCCATCAAGTATATAATTGAAGTAAGCCCGGAGGGTGCGTGCACTAGTCCGTTCAATTTTCAGGAACACATTAGCAGTGTACCATTGTGTTTAACAAGCTACTGTAAATGATATTATTGCTGTTTGAAC                                                                                          ]
[-] EMBL CB657243             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TCGAGCTGCTCCGTGGCCTCGATGCGCCTCCTGGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTGGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTTGCATCTGGTTTTTCAGTTGTTCCAGTTGCATCACAGACCTGGAAGGCTTATTTTGGGCTAACACGAAGCGGATCCCCTAAGGACTATAGCAGGCAAGCTGCTTCAATCTTGTTCCCGGACAAGGCCCTGTCCCTGAATAGGAAGAAACATCATGGGCGAGCAGAGGCCCTTTTGTTAGCGGCCTACGGAAAAGGTCTTGTGCTGCCATCAGGGGAGTTCAGCAAAACATTATGACAATCCGACTTTTATAGGGAGGCTTGACTGACTGATCATTTTGAGTGGACTGGTGCAAACATTTTGGTATTTCCTCATGGGCGCCATCAAGTATATAATTGAAGTAAGCCCGGAGGGTGCGTGCACTAGTCCGTTCAATTTTCAGGAACCCATTAGCAGTGTACCATTGTGTTTAACAAGCTACTGTAAATGATATTATTGCTGTTTGAACGGTTGATTTGAAGTTGGAAATGAACCGATGATTCTTTTTTTTTTGGGTGAGCGAGATTGTAGCAGTCTTTTTAAGGCTTTTAATTATAAG]


>consensus_5797#0 ATTATGGCAGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCCTCCCCGCCGGCAGCCAGGAC CACATGAACGCGCTCCGCTCCACCGCACTCCGCCGCTCCACCCTGCACTGGGACGCCGCC GCGGCCTTCTTCGCCCCGCCCTTCCGCTCCCGAAGCTGCCGCCGCCGCCGCGTGCCTGCT CCTGCCGCCGCCGCCGAGACGAGGCCCACCAGGTCCCCCTCTAGGGCTAGGGCCAGGGCG CGGGCGAAGCTACTGGCGGACGCCGATACGAGGGACCCCTGGCTGGCCTCCCTCTCGCTG CTCCCGGTCGACGACGGCGAGGCCGCCGCCGCCGCCGCCGCGGCCTCCACCGGCTGGGCG ATTGGGGTGGATCCCGATACGGGCGGCGCAATCGCCGTCCTCTCGCCCGACGGGTCCTCG CAGGTGTTTGATAACCCGTTCGTGCACATAGTGGTCTCGGAGTTCATCCGGAAGCGCTTG GACACCAAATCCATCATCGAGCTGCTCCGTGGCCTCGATGCGCCTCCTGGAACTACGGCA TATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTGGGATGGTGGAGTACAGGT TTTTCGTATGGCCTGTGGATTGCTGCTCTAGTTGCATCTGGTTTTTCAGTTGTTCCAGTT GCATCACAGACCTGGAAGGCTTATTTTGGGCTAACACGAAGCGGATCACCTAAGGACTAT AGCAGGCAAGCTGCTTCAATCTTGTTCCCGGACAAGGCCCTGTCCCTGAATAGGAAGAAA CATCATGGGCGAGCAGAGGCCCTTTTGTTAGCGGCCTACGGAAAAGGTCTTGTGCTGCCA TCAGGGGAGTTCAGCAAAACATTATGACAATCCGACTTTTATAGGGAGGCTTGACTGACT GATCATTTTGAGTGGACTGGTGCAAACATTTTGGTATTTCCCCATGGGCGCCATCAAGTA TATAATTGAAGTAAGCCCGGAGGGTGCGTGCACTAGTCCGTTCAATTTTCAGGAACACAT TAGCAGTGTACCATTGTGTTTAACAAGCTACTGTAAATGATATTATTGCTGTTTGAACGG TTGATTTGAAGTTGGAAATGAACCGATGATTCTTTTTTTTTTGGGTGAGCGAGATTGTAG CAGTCTTTTTAAGGCTTTTAATTATAAG



consensusID : consensus_5797#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 747
fasta sequence
                              [TGGCAGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCCTCCCCGCCGGCAGCCAGGACCACATGAACGCGCTCCGCTCCACCGCACTCCGCCGCTCCACCCTGCACTGGGACGCCGCCGCGGCCTTCTTCGCCCCGCCCTTCCGCTCCCGAAGCTGCCGCCGCCGCCGCGTGCCTGCTCCTGCCGCCGCCGCCGAGACGAGGCCCACCAGGTCCCCCTCTAGGGCTAGGGCCAGGGCGCGGGCGAAGCTACTGGCGGACGCCGATACGAGGGACCCCTGGCTGGCCTCCCTCTCGCTGCTCCCGGTCGACGACGGCGAGGCCGCCGCCGCCGCCGCCGCGGCCTCCACCGGCTGGGCGATTGGGGTGGATCCCGATACGGGCGGCGCAATCGCCGTCCTCTCGCCCGACGGGTCCTCGCAGGTATGGCTGGGTTTCTTTGCTCCGATGGAACTCGCGCATTCTGTGTGTACAACTTGTGTGCTTGAGCAAAGGCGTTCATGTCTTGCAGGTGTTTGATAACCCGTTCGTGCACATAGTGGTCTCGGAGTTCATCCGGAAGCGCTTGGACACCAAATCCATCATCGAGCTGCTCCGTGGCCTCGATGCGCCTCCTGGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTGGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTTGCATCTGGTTTTTCAGTTGTTCCAGTTGCA]

[+] EMBL CB657242             [TGGCAGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCCTCCCCGCCGGCAGCCAGGACCACATGAACGCGCTCCGCTCCACCGCACTCCGCCGCTCCACCCTGCACTGGGACGCCGCCGCGGCCTTCTTCGCCCCGCCCTTCCGCTCCCGAAGCTGCCGCCGCCGCCGCGTGCCTGCTCCTGCCGCCGCCGCCGAGACGAGGCCCACCAGGTCCCCCTCTAGGGCTAGGGCCAGGGCGCGGGCGAAGCTACTGGCGGACGCCGATACGAGGGACCCCTGGCTGGCCTCCCTCTCGCTGCTCCCGGTCGACGACGGCGAGGCCGCCGCCGCCGCCGCCGCGGCCTCCACCGGCTGGGCGATTGGGGTGGATCCCGATACGGGCGGCGCAATCGCCGTCCTCTCGCCCGACGGGTCCTCGCAGGTATGGCTGGGTTTCTTTGCTCCGATGGAACTCGCGCATTCTGTGTGTACAACTTGTGTGCTTGAGCAAAGGCGTTCATGTCTTGCAGGTGTTTGATAACCCGTTCGTGCACATAGTGGTCTCGGAGTTCATCCGGAAGCGCTTGGACACCAAATCCATCATCGAGCTGCTCCGTGGCCTCGATGCGCCTCCTGGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTGGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTTGCATCTGGTTTTTCAGTTGTTCCAGTTGCA]


>consensus_5797#1 TGGCAGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCCTCCCCGCCGGCAGCCAGGACCACA TGAACGCGCTCCGCTCCACCGCACTCCGCCGCTCCACCCTGCACTGGGACGCCGCCGCGG CCTTCTTCGCCCCGCCCTTCCGCTCCCGAAGCTGCCGCCGCCGCCGCGTGCCTGCTCCTG CCGCCGCCGCCGAGACGAGGCCCACCAGGTCCCCCTCTAGGGCTAGGGCCAGGGCGCGGG CGAAGCTACTGGCGGACGCCGATACGAGGGACCCCTGGCTGGCCTCCCTCTCGCTGCTCC CGGTCGACGACGGCGAGGCCGCCGCCGCCGCCGCCGCGGCCTCCACCGGCTGGGCGATTG GGGTGGATCCCGATACGGGCGGCGCAATCGCCGTCCTCTCGCCCGACGGGTCCTCGCAGG TATGGCTGGGTTTCTTTGCTCCGATGGAACTCGCGCATTCTGTGTGTACAACTTGTGTGC TTGAGCAAAGGCGTTCATGTCTTGCAGGTGTTTGATAACCCGTTCGTGCACATAGTGGTC TCGGAGTTCATCCGGAAGCGCTTGGACACCAAATCCATCATCGAGCTGCTCCGTGGCCTC GATGCGCCTCCTGGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGA AAGCTGGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTTGCA TCTGGTTTTTCAGTTGTTCCAGTTGCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5797#0      ATTATGGCAGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCCTCCCCGCCGGCAGCCAGGAC 60
consensus_5797#1      ----TGGCAGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCCTCCCCGCCGGCAGCCAGGAC 56
                          ********************************************************

consensus_5797#0      CACATGAACGCGCTCCGCTCCACCGCACTCCGCCGCTCCACCCTGCACTGGGACGCCGCC 120
consensus_5797#1      CACATGAACGCGCTCCGCTCCACCGCACTCCGCCGCTCCACCCTGCACTGGGACGCCGCC 116
                      ************************************************************

consensus_5797#0      GCGGCCTTCTTCGCCCCGCCCTTCCGCTCCCGAAGCTGCCGCCGCCGCCGCGTGCCTGCT 180
consensus_5797#1      GCGGCCTTCTTCGCCCCGCCCTTCCGCTCCCGAAGCTGCCGCCGCCGCCGCGTGCCTGCT 176
                      ************************************************************

consensus_5797#0      CCTGCCGCCGCCGCCGAGACGAGGCCCACCAGGTCCCCCTCTAGGGCTAGGGCCAGGGCG 240
consensus_5797#1      CCTGCCGCCGCCGCCGAGACGAGGCCCACCAGGTCCCCCTCTAGGGCTAGGGCCAGGGCG 236
                      ************************************************************

consensus_5797#0      CGGGCGAAGCTACTGGCGGACGCCGATACGAGGGACCCCTGGCTGGCCTCCCTCTCGCTG 300
consensus_5797#1      CGGGCGAAGCTACTGGCGGACGCCGATACGAGGGACCCCTGGCTGGCCTCCCTCTCGCTG 296
                      ************************************************************

consensus_5797#0      CTCCCGGTCGACGACGGCGAGGCCGCCGCCGCCGCCGCCGCGGCCTCCACCGGCTGGGCG 360
consensus_5797#1      CTCCCGGTCGACGACGGCGAGGCCGCCGCCGCCGCCGCCGCGGCCTCCACCGGCTGGGCG 356
                      ************************************************************

consensus_5797#0      ATTGGGGTGGATCCCGATACGGGCGGCGCAATCGCCGTCCTCTCGCCCGACGGGTCCTCG 420
consensus_5797#1      ATTGGGGTGGATCCCGATACGGGCGGCGCAATCGCCGTCCTCTCGCCCGACGGGTCCTCG 416
                      ************************************************************

consensus_5797#0      CAGGT------------------------------------------------------- 425
consensus_5797#1      CAGGTATGGCTGGGTTTCTTTGCTCCGATGGAACTCGCGCATTCTGTGTGTACAACTTGT 476
                      *****                                                       

consensus_5797#0      ---------------------------------GTTTGATAACCCGTTCGTGCACATAGT 452
consensus_5797#1      GTGCTTGAGCAAAGGCGTTCATGTCTTGCAGGTGTTTGATAACCCGTTCGTGCACATAGT 536
                                                       ***************************

consensus_5797#0      GGTCTCGGAGTTCATCCGGAAGCGCTTGGACACCAAATCCATCATCGAGCTGCTCCGTGG 512
consensus_5797#1      GGTCTCGGAGTTCATCCGGAAGCGCTTGGACACCAAATCCATCATCGAGCTGCTCCGTGG 596
                      ************************************************************

consensus_5797#0      CCTCGATGCGCCTCCTGGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGA 572
consensus_5797#1      CCTCGATGCGCCTCCTGGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGA 656
                      ************************************************************

consensus_5797#0      TGGAAAGCTGGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGT 632
consensus_5797#1      TGGAAAGCTGGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGT 716
                      ************************************************************

consensus_5797#0      TGCATCTGGTTTTTCAGTTGTTCCAGTTGCATCACAGACCTGGAAGGCTTATTTTGGGCT 692
consensus_5797#1      TGCATCTGGTTTTTCAGTTGTTCCAGTTGCA----------------------------- 747
                      *******************************                             

consensus_5797#0      AACACGAAGCGGATCACCTAAGGACTATAGCAGGCAAGCTGCTTCAATCTTGTTCCCGGA 752
consensus_5797#1      ------------------------------------------------------------
                                                                                  

consensus_5797#0      CAAGGCCCTGTCCCTGAATAGGAAGAAACATCATGGGCGAGCAGAGGCCCTTTTGTTAGC 812
consensus_5797#1      ------------------------------------------------------------
                                                                                  

consensus_5797#0      GGCCTACGGAAAAGGTCTTGTGCTGCCATCAGGGGAGTTCAGCAAAACATTATGACAATC 872
consensus_5797#1      ------------------------------------------------------------
                                                                                  

consensus_5797#0      CGACTTTTATAGGGAGGCTTGACTGACTGATCATTTTGAGTGGACTGGTGCAAACATTTT 932
consensus_5797#1      ------------------------------------------------------------
                                                                                  

consensus_5797#0      GGTATTTCCCCATGGGCGCCATCAAGTATATAATTGAAGTAAGCCCGGAGGGTGCGTGCA 992
consensus_5797#1      ------------------------------------------------------------
                                                                                  

consensus_5797#0      CTAGTCCGTTCAATTTTCAGGAACACATTAGCAGTGTACCATTGTGTTTAACAAGCTACT 1052
consensus_5797#1      ------------------------------------------------------------
                                                                                  

consensus_5797#0      GTAAATGATATTATTGCTGTTTGAACGGTTGATTTGAAGTTGGAAATGAACCGATGATTC 1112
consensus_5797#1      ------------------------------------------------------------
                                                                                  

consensus_5797#0      TTTTTTTTTTGGGTGAGCGAGATTGTAGCAGTCTTTTTAAGGCTTTTAATTATAAG 1168
consensus_5797#1      --------------------------------------------------------
                                                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)