These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5797#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1168 fasta sequence [ATTATGGCAGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCCTCCCCGCCGGCAGCCAGGACCACATGAACGCGCTCCGCTCCACCGCACTCCGCCGCTCCACCCTGCACTGGGACGCCGCCGCGGCCTTCTTCGCCCCGCCCTTCCGCTCCCGAAGCTGCCGCCGCCGCCGCGTGCCTGCTCCTGCCGCCGCCGCCGAGACGAGGCCCACCAGGTCCCCCTCTAGGGCTAGGGCCAGGGCGCGGGCGAAGCTACTGGCGGACGCCGATACGAGGGACCCCTGGCTGGCCTCCCTCTCGCTGCTCCCGGTCGACGACGGCGAGGCCGCCGCCGCCGCCGCCGCGGCCTCCACCGGCTGGGCGATTGGGGTGGATCCCGATACGGGCGGCGCAATCGCCGTCCTCTCGCCCGACGGGTCCTCGCAGGTGTTTGATAACCCGTTCGTGCACATAGTGGTCTCGGAGTTCATCCGGAAGCGCTTGGACACCAAATCCATCATCGAGCTGCTCCGTGGCCTCGATGCGCCTCCTGGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTGGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTTGCATCTGGTTTTTCAGTTGTTCCAGTTGCATCACAGACCTGGAAGGCTTATTTTGGGCTAACACGAAGCGGATCACCTAAGGACTATAGCAGGCAAGCTGCTTCAATCTTGTTCCCGGACAAGGCCCTGTCCCTGAATAGGAAGAAACATCATGGGCGAGCAGAGGCCCTTTTGTTAGCGGCCTACGGAAAAGGTCTTGTGCTGCCATCAGGGGAGTTCAGCAAAACATTATGACAATCCGACTTTTATAGGGAGGCTTGACTGACTGATCATTTTGAGTGGACTGGTGCAAACATTTTGGTATTTCCCCATGGGCGCCATCAAGTATATAATTGAAGTAAGCCCGGAGGGTGCGTGCACTAGTCCGTTCAATTTTCAGGAACACATTAGCAGTGTACCATTGTGTTTAACAAGCTACTGTAAATGATATTATTGCTGTTTGAACGGTTGATTTGAAGTTGGAAATGAACCGATGATTCTTTTTTTTTTGGGTGAGCGAGATTGTAGCAGTCTTTTTAAGGCTTTTAATTATAAG] [+] EMBL AK062596 [ATTATGGCAGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCCTCCCCGCCGGCAGCCAGGACCACATGAACGCGCTCCGCTCCACCGCACTCCGCCGCTCCACCCTGCACTGGGACGCCGCCGCGGCCTTCTTCGCCCCGCCCTTCCGCTCCCGAAGCTGCCGCCGCCGCCGCGTGCCTGCTCCTGCCGCCGCCGCCGAGACGAGGCCCACCAGGTCCCCCTCTAGGGCTAGGGCCAGGGCGCGGGCGAAGCTACTGGCGGACGCCGATACGAGGGACCCCTGGCTGGCCTCCCTCTCGCTGCTCCCGGTCGACGACGGCGAGGCCGCCGCCGCCGCCGCCGCGGCCTCCACCGGCTGGGCGATTGGGGTGGATCCCGATACGGGCGGCGCAATCGCCGTCCTCTCGCCCGACGGGTCCTCGCAGGTGTTTGATAACCCGTTCGTGCACATAGTGGTCTCGGAGTTCATCCGGAAGCGCTTGGACACCAAATCCATCATCGAGCTGCTCCGTGGCCTCGATGCGCCTCCTGGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTGGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTTGCATCTGGTTTTTCAGTTGTTCCAGTTGCATCACAGACCTGGAAGGCTTATTTTGGGCTAACACGAAGCGGATCACCTAAGGACTATAGCAGGCAAGCTGCTTCAATCTTGTTCCCGGACAAGGCCCTGTCCCTGAATAGGAAGAAACATCATGGGCGAGCAGAGGCCCTTTTGTTAGCGGCCTACGGAAAAGGTCTTGTGCTGCCATCAGGGGAGTTCAGCAAAACATTATGACAATCCGACTTTTATAGGGAGGCTTGACTGACTGATCATTTTGAGTGGACTGGTGCAAACATTTTGGTATTTCCCCATGGGCGCCATCAAGTATATAATTGAAGTAAGCCCGGAGGGTGCGTGCACTAGTCCGTTCAATTTTCAGGAACACATTAGCAGTGTACCATTGTGTTTAACAAGCTACTGTAAATGATATTATTGCTGTTTGAAC ] [-] EMBL CB657243 [ TCGAGCTGCTCCGTGGCCTCGATGCGCCTCCTGGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTGGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTTGCATCTGGTTTTTCAGTTGTTCCAGTTGCATCACAGACCTGGAAGGCTTATTTTGGGCTAACACGAAGCGGATCCCCTAAGGACTATAGCAGGCAAGCTGCTTCAATCTTGTTCCCGGACAAGGCCCTGTCCCTGAATAGGAAGAAACATCATGGGCGAGCAGAGGCCCTTTTGTTAGCGGCCTACGGAAAAGGTCTTGTGCTGCCATCAGGGGAGTTCAGCAAAACATTATGACAATCCGACTTTTATAGGGAGGCTTGACTGACTGATCATTTTGAGTGGACTGGTGCAAACATTTTGGTATTTCCTCATGGGCGCCATCAAGTATATAATTGAAGTAAGCCCGGAGGGTGCGTGCACTAGTCCGTTCAATTTTCAGGAACCCATTAGCAGTGTACCATTGTGTTTAACAAGCTACTGTAAATGATATTATTGCTGTTTGAACGGTTGATTTGAAGTTGGAAATGAACCGATGATTCTTTTTTTTTTGGGTGAGCGAGATTGTAGCAGTCTTTTTAAGGCTTTTAATTATAAG] consensusID : consensus_5797#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 747 fasta sequence [TGGCAGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCCTCCCCGCCGGCAGCCAGGACCACATGAACGCGCTCCGCTCCACCGCACTCCGCCGCTCCACCCTGCACTGGGACGCCGCCGCGGCCTTCTTCGCCCCGCCCTTCCGCTCCCGAAGCTGCCGCCGCCGCCGCGTGCCTGCTCCTGCCGCCGCCGCCGAGACGAGGCCCACCAGGTCCCCCTCTAGGGCTAGGGCCAGGGCGCGGGCGAAGCTACTGGCGGACGCCGATACGAGGGACCCCTGGCTGGCCTCCCTCTCGCTGCTCCCGGTCGACGACGGCGAGGCCGCCGCCGCCGCCGCCGCGGCCTCCACCGGCTGGGCGATTGGGGTGGATCCCGATACGGGCGGCGCAATCGCCGTCCTCTCGCCCGACGGGTCCTCGCAGGTATGGCTGGGTTTCTTTGCTCCGATGGAACTCGCGCATTCTGTGTGTACAACTTGTGTGCTTGAGCAAAGGCGTTCATGTCTTGCAGGTGTTTGATAACCCGTTCGTGCACATAGTGGTCTCGGAGTTCATCCGGAAGCGCTTGGACACCAAATCCATCATCGAGCTGCTCCGTGGCCTCGATGCGCCTCCTGGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTGGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTTGCATCTGGTTTTTCAGTTGTTCCAGTTGCA] [+] EMBL CB657242 [TGGCAGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCCTCCCCGCCGGCAGCCAGGACCACATGAACGCGCTCCGCTCCACCGCACTCCGCCGCTCCACCCTGCACTGGGACGCCGCCGCGGCCTTCTTCGCCCCGCCCTTCCGCTCCCGAAGCTGCCGCCGCCGCCGCGTGCCTGCTCCTGCCGCCGCCGCCGAGACGAGGCCCACCAGGTCCCCCTCTAGGGCTAGGGCCAGGGCGCGGGCGAAGCTACTGGCGGACGCCGATACGAGGGACCCCTGGCTGGCCTCCCTCTCGCTGCTCCCGGTCGACGACGGCGAGGCCGCCGCCGCCGCCGCCGCGGCCTCCACCGGCTGGGCGATTGGGGTGGATCCCGATACGGGCGGCGCAATCGCCGTCCTCTCGCCCGACGGGTCCTCGCAGGTATGGCTGGGTTTCTTTGCTCCGATGGAACTCGCGCATTCTGTGTGTACAACTTGTGTGCTTGAGCAAAGGCGTTCATGTCTTGCAGGTGTTTGATAACCCGTTCGTGCACATAGTGGTCTCGGAGTTCATCCGGAAGCGCTTGGACACCAAATCCATCATCGAGCTGCTCCGTGGCCTCGATGCGCCTCCTGGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTGGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTTGCATCTGGTTTTTCAGTTGTTCCAGTTGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5797#0 ATTATGGCAGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCCTCCCCGCCGGCAGCCAGGAC 60 consensus_5797#1 ----TGGCAGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCCTCCCCGCCGGCAGCCAGGAC 56 ******************************************************** consensus_5797#0 CACATGAACGCGCTCCGCTCCACCGCACTCCGCCGCTCCACCCTGCACTGGGACGCCGCC 120 consensus_5797#1 CACATGAACGCGCTCCGCTCCACCGCACTCCGCCGCTCCACCCTGCACTGGGACGCCGCC 116 ************************************************************ consensus_5797#0 GCGGCCTTCTTCGCCCCGCCCTTCCGCTCCCGAAGCTGCCGCCGCCGCCGCGTGCCTGCT 180 consensus_5797#1 GCGGCCTTCTTCGCCCCGCCCTTCCGCTCCCGAAGCTGCCGCCGCCGCCGCGTGCCTGCT 176 ************************************************************ consensus_5797#0 CCTGCCGCCGCCGCCGAGACGAGGCCCACCAGGTCCCCCTCTAGGGCTAGGGCCAGGGCG 240 consensus_5797#1 CCTGCCGCCGCCGCCGAGACGAGGCCCACCAGGTCCCCCTCTAGGGCTAGGGCCAGGGCG 236 ************************************************************ consensus_5797#0 CGGGCGAAGCTACTGGCGGACGCCGATACGAGGGACCCCTGGCTGGCCTCCCTCTCGCTG 300 consensus_5797#1 CGGGCGAAGCTACTGGCGGACGCCGATACGAGGGACCCCTGGCTGGCCTCCCTCTCGCTG 296 ************************************************************ consensus_5797#0 CTCCCGGTCGACGACGGCGAGGCCGCCGCCGCCGCCGCCGCGGCCTCCACCGGCTGGGCG 360 consensus_5797#1 CTCCCGGTCGACGACGGCGAGGCCGCCGCCGCCGCCGCCGCGGCCTCCACCGGCTGGGCG 356 ************************************************************ consensus_5797#0 ATTGGGGTGGATCCCGATACGGGCGGCGCAATCGCCGTCCTCTCGCCCGACGGGTCCTCG 420 consensus_5797#1 ATTGGGGTGGATCCCGATACGGGCGGCGCAATCGCCGTCCTCTCGCCCGACGGGTCCTCG 416 ************************************************************ consensus_5797#0 CAGGT------------------------------------------------------- 425 consensus_5797#1 CAGGTATGGCTGGGTTTCTTTGCTCCGATGGAACTCGCGCATTCTGTGTGTACAACTTGT 476 ***** consensus_5797#0 ---------------------------------GTTTGATAACCCGTTCGTGCACATAGT 452 consensus_5797#1 GTGCTTGAGCAAAGGCGTTCATGTCTTGCAGGTGTTTGATAACCCGTTCGTGCACATAGT 536 *************************** consensus_5797#0 GGTCTCGGAGTTCATCCGGAAGCGCTTGGACACCAAATCCATCATCGAGCTGCTCCGTGG 512 consensus_5797#1 GGTCTCGGAGTTCATCCGGAAGCGCTTGGACACCAAATCCATCATCGAGCTGCTCCGTGG 596 ************************************************************ consensus_5797#0 CCTCGATGCGCCTCCTGGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGA 572 consensus_5797#1 CCTCGATGCGCCTCCTGGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGA 656 ************************************************************ consensus_5797#0 TGGAAAGCTGGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGT 632 consensus_5797#1 TGGAAAGCTGGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGT 716 ************************************************************ consensus_5797#0 TGCATCTGGTTTTTCAGTTGTTCCAGTTGCATCACAGACCTGGAAGGCTTATTTTGGGCT 692 consensus_5797#1 TGCATCTGGTTTTTCAGTTGTTCCAGTTGCA----------------------------- 747 ******************************* consensus_5797#0 AACACGAAGCGGATCACCTAAGGACTATAGCAGGCAAGCTGCTTCAATCTTGTTCCCGGA 752 consensus_5797#1 ------------------------------------------------------------ consensus_5797#0 CAAGGCCCTGTCCCTGAATAGGAAGAAACATCATGGGCGAGCAGAGGCCCTTTTGTTAGC 812 consensus_5797#1 ------------------------------------------------------------ consensus_5797#0 GGCCTACGGAAAAGGTCTTGTGCTGCCATCAGGGGAGTTCAGCAAAACATTATGACAATC 872 consensus_5797#1 ------------------------------------------------------------ consensus_5797#0 CGACTTTTATAGGGAGGCTTGACTGACTGATCATTTTGAGTGGACTGGTGCAAACATTTT 932 consensus_5797#1 ------------------------------------------------------------ consensus_5797#0 GGTATTTCCCCATGGGCGCCATCAAGTATATAATTGAAGTAAGCCCGGAGGGTGCGTGCA 992 consensus_5797#1 ------------------------------------------------------------ consensus_5797#0 CTAGTCCGTTCAATTTTCAGGAACACATTAGCAGTGTACCATTGTGTTTAACAAGCTACT 1052 consensus_5797#1 ------------------------------------------------------------ consensus_5797#0 GTAAATGATATTATTGCTGTTTGAACGGTTGATTTGAAGTTGGAAATGAACCGATGATTC 1112 consensus_5797#1 ------------------------------------------------------------ consensus_5797#0 TTTTTTTTTTGGGTGAGCGAGATTGTAGCAGTCTTTTTAAGGCTTTTAATTATAAG 1168 consensus_5797#1 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Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||