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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5807#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1826 fasta sequence
[GGTGCACATGGGCCCAGCAACCGCAGCCGCGGAGGCAGCACTCGCCCGCCGCGCCGCCGACCCGCTGCCCGCGCTCCGCCGCCGCGACGCGCTCCCGCTCCCGGCGCGCCTCTTCGCGCAGCTCCACGCTCTCGTCCTCACCGCCGGCCTCGCGCGCCATTCCCCCAACTTCTCCCTCCTCCTCCGCCTCGCCTCCCCTCTCCTCCCCGTCTCCCACCGCCTCCGCCTCCTCCTCTCCTCCCCGCTCCCGCCCACCACCTTCCTCGCCAACTCCCTCCTCCTCGCCTCCTCCTCCTCCCGCTGCCTCCCCTCCGCGCTCTCCCTCTACGCCCTCCTCTTCCTCTCCTCCTCGCCGCCGCTCCTCCGCCCCAACGCCTTCACCTACCCGCCGCTGTTCCGCGCCGCGCCTCCGGCCCTCGCCCTCGCGCTCGCCACCCATTCGGTCAAATTCCTCGGCGCCCATGCTGCCTCCTGCGACCGCGTCCTCGGTGCCGCGCTGCTCGGCGTCTTCGCGCGCTGCGGCAGGATCGCCTCATGCCGCCGGGTGTTCGACCGGATCGCGCACCCCGACCTGCCGGCCTGGAACGCGCTGCTCTCCGCCTACGCGCGTCTTCGTGCCAGGGACGTGGCCTGCGCCACCTCTGCGGCGGATGCAATCCTCGAGCTGTTTGTGCGGATGCTATCCTTAGCCATTGAACCCAACGAGATCACGCTCGTCGCCGTCATCGGCGCGTGCGGCGAGCTTGGCGCTGTCAGCCACGGGGTGTGGGCGCTTGTGGAGATGTATGCCGGGTGCGGGAGGCTGGACCTGGCCGAGCAGGTCTTTGCAGCCGCTTCGGACAGGGACACGCGCTGCTACAATGCGATGCTCCATGGCTTGGCAGTCCATGGCCATGGCCGTGCTGCCCTCTCCCTGTTGGACAGAATGCACAGTGCGGGCGTGCCGGTGGATGGCGTCACTGTGCTATCCGTGATGTGTGCTTGTGCCCATGCTGGATTGGTGGATGAAGGTCTGGACTACTTCGACAGAATGGAGATCGAATTCGGGATTGAGCCAAGGATTGAGCATTACGGATGCATGATTGACATGCTGAGCCGGGCTGGTCGACTTAACAATGCCGAGAAGCTGATCCACGAAATGCTCATCGTGCCAAATGCCGCGATATACAGGTCTCTGATCCGGGCCTGTGGCATTCATGGCAAGCTGGAGCTCGGTGAGAAGATGATCGCAGAATTGATGCGACTTGAACCGGATGACAGTGGAAACCATGTCCTGATTTCAAACTTCTATGCGAGAACGAACCGATGGGAGGATGCCAAGAAGGCGAGGAAGGAGATGAAGTCCATGGGCATTGACAAGAACCCTGGATCAAGCCTTGTAGACATCAATGGAGTTCTCCATGAGTTCTTGGTGGGTGACAAGACACACCCTGCCTCAAAGGAGATATACACCATGGTTGAGGAGATAGAAACCAGGTTAATCGAGTGCGGACGCCGGTCGAGCACCTCGTCTGCGTTGTTTGATGTCGAGGAGGAGGACAAGGCGGATACACTGTCCTACCACAGCGAGAGGCTCGCCATTGCCTTTGCTCTGATCGCTTCCAATCCAGGAGCTCCCATTAGGATCATCAAGAATCTCCGGGTGTGTGCCGATTGCCATGAGAGCGCAAAGCTTGTATCTCGGGTGTATGGTAGAGAGATTGTCATGAGGGACCGTACCCGGTTCCATCACTTCAGAGACGGGGTGTGTTCTTGTGGAGATTTCTGGTAAATACTCGTTGTGTTGTATTGTACATTATACAGTGTAATGTGCTGTAGATTTCTCT]
[+] EMBL AK109466 [GGTGCACATGGGCCCAGCAACCGCAGCCGCGGAGGCAGCACTCGCCCGCCGCGCCGCCGACCCGCTGCCCGCGCTCCGCCGCCGCGACGCGCTCCCGCTCCCGGCGCGCCTCTTCGCGCAGCTCCACGCTCTCGTCCTCACCGCCGGCCTCGCGCGCCATTCCCCCAACTTCTCCCTCCTCCTCCGCCTCGCCTCCCCTCTCCTCCCCGTCTCCCACCGCCTCCGCCTCCTCCTCTCCTCCCCGCTCCCGCCCACCACCTTCCTCGCCAACTCCCTCCTCCTCGCCTCCTCCTCCTCCCGCTGCCTCCCCTCCGCGCTCTCCCTCTACGCCCTCCTCTTCCTCTCCTCCTCGCCGCCGCTCCTCCGCCCCAACGCCTTCACCTACCCGCCGCTGTTCCGCGCCGCGCCTCCGGCCCTCGCCCTCGCGCTCGCCACCCATTCGGTCAAATTCCTCGGCGCCCATGCTGCCTCCTGCGACCGCGTCCTCGGTGCCGCGCTGCTCGGCGTCTTCGCGCGCTGCGGCAGGATCGCCTCATGCCGCCGGGTGTTCGACCGGATCGCGCACCCCGACCTGCCGGCCTGGAACGCGCTGCTCTCCGCCTACGCGCGTCTTCGTGCCAGGGACGTGGCCTGCGCCACCTCTGCGGCGGATGCAATCCTCGAGCTGTTTGTGCGGATGCTATCCTTAGCCATTGAACCCAACGAGATCACGCTCGTCGCCGTCATCGGCGCGTGCGGCGAGCTTGGCGCTGTCAGCCACGGGGTGTGGGCGCTTGTGGAGATGTATGCCGGGTGCGGGAGGCTGGACCTGGCCGAGCAGGTCTTTGCAGCCGCTTCGGACAGGGACACGCGCTGCTACAATGCGATGCTCCATGGCTTGGCAGTCCATGGCCATGGCCGTGCTGCCCTCTCCCTGTTGGACAGAATGCACAGTGCGGGCGTGCCGGTGGATGGCGTCACTGTGCTATCCGTGATGTGTGCTTGTGCCCATGCTGGATTGGTGGATGAAGGTCTGGACTACTTCGACAGAATGGAGATCGAATTCGGGATTGAGCCAAGGATTGAGCATTACGGATGCATGATTGACATGCTGAGCCGGGCTGGTCGACTTAACAATGCCGAGAAGCTGATCCACGAAATGCTCATCGTGCCAAATGCCGCGATATACAGGTCTCTGATCCGGGCCTGTGGCATTCATGGCAAGCTGGAGCTCGGTGAGAAGATGATCGCAGAATTGATGCGACTTGAACCGGATGACAGTGGAAACCATGTCCTGATTTCAAACTTCTATGCGAGAACGAACCGATGGGAGGATGCCAAGAAGGCGAGGAAGGAGATGAAGTCCATGGGCATTGACAAGAACCCTGGATCAAGCCTTGTAGACATCAATGGAGTTCTCCATGAGTTCTTGGTGGGTGACAAGACACACCCTGCCTCAAAGGAGATATACACCATGGTTGAGGAGATAGAAACCAGGTTAATCGAGTGCGGACGCCGGTCGAGCACCTCGTCTGCGTTGTTTGATGTCGAGGAGGAGGACAAGGCGGATACACTGTCCTACCACAGCGAGAGGCTCGCCATTGCCTTTGCTCTGATCGCTTCCAATCCAGGAGCTCCCATTAGGATCATCAAGAATCTCCGGGTGTGTGCCGATTGCCATGAGAGCGCAAAGCTTGTATCTCGGGTGTATGGTAGAGAGATTGTCATGAGGGACCGTACCCGGTTCCATCACTTCAGAGACGGGGTGTGTTCTTGTGGAGATTTCTGGTAAATACTCGTTGTGTTGTATTGTACATTATACAGTGTAATGTGCTGTAGA ]
[-] EMBL CB657750 [ TGGACTACTTCGACAGAATGGAGATCGAATTCGGGATTGAGCCAAGGATTGAGCATTACGGATGCATGATTGACATGCTGAGCCGGGCTGGTCGACTTAACAATGCCGAGAAGCTGATCCACGAAATGCTCATCGTGCCAAATGCCGCGATATACAGGTCTCTGATCCGGGCCTGTGGCATTCATGGCAAGCTGGAGCTCGGTGAGAAGATGATCGCAGAATTGATGCGACTTGAACCGGATGACAGTGGAAACCATGTCCTGATTTCAAACTTCTATGCGAGAACGAACCGATGGGAGGATGCCAAGAAGGCGAGGAAGGAGATGAAGTCCATGGGCATTGACAAGAACCCTGGATCAAGCCTTGTAGACATCAATGGAGTTCTCCATGAGTTCTTGGTGGGTGACAAGACACACCCTGCCTCAAAGGAGATATACACCATGGTTGAGGAGATAGAAACCAGGTTAATCGAGTGCGGACGCCGGTCGAGCACCTCGTCTGCGTTGTTTGATGTCGAGGAGGAGGACAAGGCGGATACACTGTCCTACCACAGCGAGAGGCTCGCCATTGCCTTTGCTCTGATCGCTTCCAATCCAGGAGCTCCCATTAGGATCATCAAGAATCTCCGGGTGTGTGCCGATTGCCATGAGAGCGCAAAGCTTGTATCTCGGGTGTATGGTAGAGAGATTGTCATGAGGGACCGTACCCGGTTCCATCACTTCAGAGACGGGGTGTGTTCTTGTGGAGATTTCTGGTAAATACTCGTTGTGTTGTATTGTGCATTATACAGTGTAATGTGCTGTAGATTTCTCT]
consensusID : consensus_5807#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 816 fasta sequence
[GCCTCCGGCCCTCGCCCTCGCGCTCGCCACCCATTCGGTCAAATTCCTCGGCGCCCATGCTGCCTCCTGCGACCGCGTCCTCGGTGCCGCGCTGCTCGGCGTCTTCGCGCGCTGCGGCAGGATCGCCTCATGCCGCCGGGTGTTCGACCGGATCGCGCACCCCGACCTGCCGGCCTGGAACGCGCTGCTCTCCGCCTACGCGCGTCTTCGTGCCAGGGACGTGGCCTGCGCCACCTCTGCGGCGGATGCAATCCTCGAGCTGTTTGTGCGGATGCTATCCTTAGCCATTGAACCCAACGAGATCACGCTCGTCGCCGTCATCGGCGCGTGCGGCGAGCTTGGCGCTGTCAGCCACGGGGTGTGGGCGCACACCTATGCCGTGAAGCGCCGGCTCGCCGTCAACTGCATCGTGGCCACGGCGCTTGTGGAGATGTATGCCGGGTGCGGGAGGCTGGACCTGGCCGAGCAGGTCTTTGCAGCCGCTTCGGACAGGGACACGCGCTGCTACAATGCGATGCTCCATGGCTTGGCAGTCCATGGCCATGGCCGTGCTGCCCTCTCCCTGTTGGACAGAATGCACGGTGCGGGCGTGCCGGTGGATGGCGTCACTGTGCTATCCGTGATGTGTGCTTGTGCCCATGCTGGATTGGTGGATGAAGGTCTGGACTACTTCGACAGAATGGAGATCGAATTCGGGATTGAGCCAAGGATTGAGCATTACNGATGCATGATTGACATGCTGAGCCGGGCTGGTCGACTTAACAATGCCGAGAAGCTGATCCACGAAATGCTCATCGTGCCAAATGCCGCGATATA]
[+] EMBL CB657749 [GCCTCCGGCCCTCGCCCTCGCGCTCGCCACCCATTCGGTCAAATTCCTCGGCGCCCATGCTGCCTCCTGCGACCGCGTCCTCGGTGCCGCGCTGCTCGGCGTCTTCGCGCGCTGCGGCAGGATCGCCTCATGCCGCCGGGTGTTCGACCGGATCGCGCACCCCGACCTGCCGGCCTGGAACGCGCTGCTCTCCGCCTACGCGCGTCTTCGTGCCAGGGACGTGGCCTGCGCCACCTCTGCGGCGGATGCAATCCTCGAGCTGTTTGTGCGGATGCTATCCTTAGCCATTGAACCCAACGAGATCACGCTCGTCGCCGTCATCGGCGCGTGCGGCGAGCTTGGCGCTGTCAGCCACGGGGTGTGGGCGCACACCTATGCCGTGAAGCGCCGGCTCGCCGTCAACTGCATCGTGGCCACGGCGCTTGTGGAGATGTATGCCGGGTGCGGGAGGCTGGACCTGGCCGAGCAGGTCTTTGCAGCCGCTTCGGACAGGGACACGCGCTGCTACAATGCGATGCTCCATGGCTTGGCAGTCCATGGCCATGGCCGTGCTGCCCTCTCCCTGTTGGACAGAATGCACGGTGCGGGCGTGCCGGTGGATGGCGTCACTGTGCTATCCGTGATGTGTGCTTGTGCCCATGCTGGATTGGTGGATGAAGGTCTGGACTACTTCGACAGAATGGAGATCGAATTCGGGATTGAGCCAAGGATTGAGCATTACNGATGCATGATTGACATGCTGAGCCGGGCTGGTCGACTTAACAATGCCGAGAAGCTGATCCACGAAATGCTCATCGTGCCAAATGCCGCGATATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5807#0 GGTGCACATGGGCCCAGCAACCGCAGCCGCGGAGGCAGCACTCGCCCGCCGCGCCGCCGA 60
consensus_5807#1 ------------------------------------------------------------
consensus_5807#0 CCCGCTGCCCGCGCTCCGCCGCCGCGACGCGCTCCCGCTCCCGGCGCGCCTCTTCGCGCA 120
consensus_5807#1 ------------------------------------------------------------
consensus_5807#0 GCTCCACGCTCTCGTCCTCACCGCCGGCCTCGCGCGCCATTCCCCCAACTTCTCCCTCCT 180
consensus_5807#1 ------------------------------------------------------------
consensus_5807#0 CCTCCGCCTCGCCTCCCCTCTCCTCCCCGTCTCCCACCGCCTCCGCCTCCTCCTCTCCTC 240
consensus_5807#1 ------------------------------------------------------------
consensus_5807#0 CCCGCTCCCGCCCACCACCTTCCTCGCCAACTCCCTCCTCCTCGCCTCCTCCTCCTCCCG 300
consensus_5807#1 ------------------------------------------------------------
consensus_5807#0 CTGCCTCCCCTCCGCGCTCTCCCTCTACGCCCTCCTCTTCCTCTCCTCCTCGCCGCCGCT 360
consensus_5807#1 ------------------------------------------------------------
consensus_5807#0 CCTCCGCCCCAACGCCTTCACCTACCCGCCGCTGTTCCGCGCCGCGCCTCCGGCCCTCGC 420
consensus_5807#1 ---------------------------------------------GCCTCCGGCCCTCGC 15
***************
consensus_5807#0 CCTCGCGCTCGCCACCCATTCGGTCAAATTCCTCGGCGCCCATGCTGCCTCCTGCGACCG 480
consensus_5807#1 CCTCGCGCTCGCCACCCATTCGGTCAAATTCCTCGGCGCCCATGCTGCCTCCTGCGACCG 75
************************************************************
consensus_5807#0 CGTCCTCGGTGCCGCGCTGCTCGGCGTCTTCGCGCGCTGCGGCAGGATCGCCTCATGCCG 540
consensus_5807#1 CGTCCTCGGTGCCGCGCTGCTCGGCGTCTTCGCGCGCTGCGGCAGGATCGCCTCATGCCG 135
************************************************************
consensus_5807#0 CCGGGTGTTCGACCGGATCGCGCACCCCGACCTGCCGGCCTGGAACGCGCTGCTCTCCGC 600
consensus_5807#1 CCGGGTGTTCGACCGGATCGCGCACCCCGACCTGCCGGCCTGGAACGCGCTGCTCTCCGC 195
************************************************************
consensus_5807#0 CTACGCGCGTCTTCGTGCCAGGGACGTGGCCTGCGCCACCTCTGCGGCGGATGCAATCCT 660
consensus_5807#1 CTACGCGCGTCTTCGTGCCAGGGACGTGGCCTGCGCCACCTCTGCGGCGGATGCAATCCT 255
************************************************************
consensus_5807#0 CGAGCTGTTTGTGCGGATGCTATCCTTAGCCATTGAACCCAACGAGATCACGCTCGTCGC 720
consensus_5807#1 CGAGCTGTTTGTGCGGATGCTATCCTTAGCCATTGAACCCAACGAGATCACGCTCGTCGC 315
************************************************************
consensus_5807#0 CGTCATCGGCGCGTGCGGCGAGCTTGGCGCTGTCAGCCACGGGGTGTGGGCGC------- 773
consensus_5807#1 CGTCATCGGCGCGTGCGGCGAGCTTGGCGCTGTCAGCCACGGGGTGTGGGCGCACACCTA 375
*****************************************************
consensus_5807#0 -----------------------------------------------TTGTGGAGATGTA 786
consensus_5807#1 TGCCGTGAAGCGCCGGCTCGCCGTCAACTGCATCGTGGCCACGGCGCTTGTGGAGATGTA 435
*************
consensus_5807#0 TGCCGGGTGCGGGAGGCTGGACCTGGCCGAGCAGGTCTTTGCAGCCGCTTCGGACAGGGA 846
consensus_5807#1 TGCCGGGTGCGGGAGGCTGGACCTGGCCGAGCAGGTCTTTGCAGCCGCTTCGGACAGGGA 495
************************************************************
consensus_5807#0 CACGCGCTGCTACAATGCGATGCTCCATGGCTTGGCAGTCCATGGCCATGGCCGTGCTGC 906
consensus_5807#1 CACGCGCTGCTACAATGCGATGCTCCATGGCTTGGCAGTCCATGGCCATGGCCGTGCTGC 555
************************************************************
consensus_5807#0 CCTCTCCCTGTTGGACAGAATGCACAGTGCGGGCGTGCCGGTGGATGGCGTCACTGTGCT 966
consensus_5807#1 CCTCTCCCTGTTGGACAGAATGCACGGTGCGGGCGTGCCGGTGGATGGCGTCACTGTGCT 615
************************* **********************************
consensus_5807#0 ATCCGTGATGTGTGCTTGTGCCCATGCTGGATTGGTGGATGAAGGTCTGGACTACTTCGA 1026
consensus_5807#1 ATCCGTGATGTGTGCTTGTGCCCATGCTGGATTGGTGGATGAAGGTCTGGACTACTTCGA 675
************************************************************
consensus_5807#0 CAGAATGGAGATCGAATTCGGGATTGAGCCAAGGATTGAGCATTACGGATGCATGATTGA 1086
consensus_5807#1 CAGAATGGAGATCGAATTCGGGATTGAGCCAAGGATTGAGCATTACNGATGCATGATTGA 735
********************************************** *************
consensus_5807#0 CATGCTGAGCCGGGCTGGTCGACTTAACAATGCCGAGAAGCTGATCCACGAAATGCTCAT 1146
consensus_5807#1 CATGCTGAGCCGGGCTGGTCGACTTAACAATGCCGAGAAGCTGATCCACGAAATGCTCAT 795
************************************************************
consensus_5807#0 CGTGCCAAATGCCGCGATATACAGGTCTCTGATCCGGGCCTGTGGCATTCATGGCAAGCT 1206
consensus_5807#1 CGTGCCAAATGCCGCGATATA--------------------------------------- 816
*********************
consensus_5807#0 GGAGCTCGGTGAGAAGATGATCGCAGAATTGATGCGACTTGAACCGGATGACAGTGGAAA 1266
consensus_5807#1 ------------------------------------------------------------
consensus_5807#0 CCATGTCCTGATTTCAAACTTCTATGCGAGAACGAACCGATGGGAGGATGCCAAGAAGGC 1326
consensus_5807#1 ------------------------------------------------------------
consensus_5807#0 GAGGAAGGAGATGAAGTCCATGGGCATTGACAAGAACCCTGGATCAAGCCTTGTAGACAT 1386
consensus_5807#1 ------------------------------------------------------------
consensus_5807#0 CAATGGAGTTCTCCATGAGTTCTTGGTGGGTGACAAGACACACCCTGCCTCAAAGGAGAT 1446
consensus_5807#1 ------------------------------------------------------------
consensus_5807#0 ATACACCATGGTTGAGGAGATAGAAACCAGGTTAATCGAGTGCGGACGCCGGTCGAGCAC 1506
consensus_5807#1 ------------------------------------------------------------
consensus_5807#0 CTCGTCTGCGTTGTTTGATGTCGAGGAGGAGGACAAGGCGGATACACTGTCCTACCACAG 1566
consensus_5807#1 ------------------------------------------------------------
consensus_5807#0 CGAGAGGCTCGCCATTGCCTTTGCTCTGATCGCTTCCAATCCAGGAGCTCCCATTAGGAT 1626
consensus_5807#1 ------------------------------------------------------------
consensus_5807#0 CATCAAGAATCTCCGGGTGTGTGCCGATTGCCATGAGAGCGCAAAGCTTGTATCTCGGGT 1686
consensus_5807#1 ------------------------------------------------------------
consensus_5807#0 GTATGGTAGAGAGATTGTCATGAGGGACCGTACCCGGTTCCATCACTTCAGAGACGGGGT 1746
consensus_5807#1 ------------------------------------------------------------
consensus_5807#0 GTGTTCTTGTGGAGATTTCTGGTAAATACTCGTTGTGTTGTATTGTACATTATACAGTGT 1806
consensus_5807#1 ------------------------------------------------------------
consensus_5807#0 AATGTGCTGTAGATTTCTCT 1826
consensus_5807#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||