These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5807#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1826 fasta sequence [GGTGCACATGGGCCCAGCAACCGCAGCCGCGGAGGCAGCACTCGCCCGCCGCGCCGCCGACCCGCTGCCCGCGCTCCGCCGCCGCGACGCGCTCCCGCTCCCGGCGCGCCTCTTCGCGCAGCTCCACGCTCTCGTCCTCACCGCCGGCCTCGCGCGCCATTCCCCCAACTTCTCCCTCCTCCTCCGCCTCGCCTCCCCTCTCCTCCCCGTCTCCCACCGCCTCCGCCTCCTCCTCTCCTCCCCGCTCCCGCCCACCACCTTCCTCGCCAACTCCCTCCTCCTCGCCTCCTCCTCCTCCCGCTGCCTCCCCTCCGCGCTCTCCCTCTACGCCCTCCTCTTCCTCTCCTCCTCGCCGCCGCTCCTCCGCCCCAACGCCTTCACCTACCCGCCGCTGTTCCGCGCCGCGCCTCCGGCCCTCGCCCTCGCGCTCGCCACCCATTCGGTCAAATTCCTCGGCGCCCATGCTGCCTCCTGCGACCGCGTCCTCGGTGCCGCGCTGCTCGGCGTCTTCGCGCGCTGCGGCAGGATCGCCTCATGCCGCCGGGTGTTCGACCGGATCGCGCACCCCGACCTGCCGGCCTGGAACGCGCTGCTCTCCGCCTACGCGCGTCTTCGTGCCAGGGACGTGGCCTGCGCCACCTCTGCGGCGGATGCAATCCTCGAGCTGTTTGTGCGGATGCTATCCTTAGCCATTGAACCCAACGAGATCACGCTCGTCGCCGTCATCGGCGCGTGCGGCGAGCTTGGCGCTGTCAGCCACGGGGTGTGGGCGCTTGTGGAGATGTATGCCGGGTGCGGGAGGCTGGACCTGGCCGAGCAGGTCTTTGCAGCCGCTTCGGACAGGGACACGCGCTGCTACAATGCGATGCTCCATGGCTTGGCAGTCCATGGCCATGGCCGTGCTGCCCTCTCCCTGTTGGACAGAATGCACAGTGCGGGCGTGCCGGTGGATGGCGTCACTGTGCTATCCGTGATGTGTGCTTGTGCCCATGCTGGATTGGTGGATGAAGGTCTGGACTACTTCGACAGAATGGAGATCGAATTCGGGATTGAGCCAAGGATTGAGCATTACGGATGCATGATTGACATGCTGAGCCGGGCTGGTCGACTTAACAATGCCGAGAAGCTGATCCACGAAATGCTCATCGTGCCAAATGCCGCGATATACAGGTCTCTGATCCGGGCCTGTGGCATTCATGGCAAGCTGGAGCTCGGTGAGAAGATGATCGCAGAATTGATGCGACTTGAACCGGATGACAGTGGAAACCATGTCCTGATTTCAAACTTCTATGCGAGAACGAACCGATGGGAGGATGCCAAGAAGGCGAGGAAGGAGATGAAGTCCATGGGCATTGACAAGAACCCTGGATCAAGCCTTGTAGACATCAATGGAGTTCTCCATGAGTTCTTGGTGGGTGACAAGACACACCCTGCCTCAAAGGAGATATACACCATGGTTGAGGAGATAGAAACCAGGTTAATCGAGTGCGGACGCCGGTCGAGCACCTCGTCTGCGTTGTTTGATGTCGAGGAGGAGGACAAGGCGGATACACTGTCCTACCACAGCGAGAGGCTCGCCATTGCCTTTGCTCTGATCGCTTCCAATCCAGGAGCTCCCATTAGGATCATCAAGAATCTCCGGGTGTGTGCCGATTGCCATGAGAGCGCAAAGCTTGTATCTCGGGTGTATGGTAGAGAGATTGTCATGAGGGACCGTACCCGGTTCCATCACTTCAGAGACGGGGTGTGTTCTTGTGGAGATTTCTGGTAAATACTCGTTGTGTTGTATTGTACATTATACAGTGTAATGTGCTGTAGATTTCTCT] [+] EMBL AK109466 [GGTGCACATGGGCCCAGCAACCGCAGCCGCGGAGGCAGCACTCGCCCGCCGCGCCGCCGACCCGCTGCCCGCGCTCCGCCGCCGCGACGCGCTCCCGCTCCCGGCGCGCCTCTTCGCGCAGCTCCACGCTCTCGTCCTCACCGCCGGCCTCGCGCGCCATTCCCCCAACTTCTCCCTCCTCCTCCGCCTCGCCTCCCCTCTCCTCCCCGTCTCCCACCGCCTCCGCCTCCTCCTCTCCTCCCCGCTCCCGCCCACCACCTTCCTCGCCAACTCCCTCCTCCTCGCCTCCTCCTCCTCCCGCTGCCTCCCCTCCGCGCTCTCCCTCTACGCCCTCCTCTTCCTCTCCTCCTCGCCGCCGCTCCTCCGCCCCAACGCCTTCACCTACCCGCCGCTGTTCCGCGCCGCGCCTCCGGCCCTCGCCCTCGCGCTCGCCACCCATTCGGTCAAATTCCTCGGCGCCCATGCTGCCTCCTGCGACCGCGTCCTCGGTGCCGCGCTGCTCGGCGTCTTCGCGCGCTGCGGCAGGATCGCCTCATGCCGCCGGGTGTTCGACCGGATCGCGCACCCCGACCTGCCGGCCTGGAACGCGCTGCTCTCCGCCTACGCGCGTCTTCGTGCCAGGGACGTGGCCTGCGCCACCTCTGCGGCGGATGCAATCCTCGAGCTGTTTGTGCGGATGCTATCCTTAGCCATTGAACCCAACGAGATCACGCTCGTCGCCGTCATCGGCGCGTGCGGCGAGCTTGGCGCTGTCAGCCACGGGGTGTGGGCGCTTGTGGAGATGTATGCCGGGTGCGGGAGGCTGGACCTGGCCGAGCAGGTCTTTGCAGCCGCTTCGGACAGGGACACGCGCTGCTACAATGCGATGCTCCATGGCTTGGCAGTCCATGGCCATGGCCGTGCTGCCCTCTCCCTGTTGGACAGAATGCACAGTGCGGGCGTGCCGGTGGATGGCGTCACTGTGCTATCCGTGATGTGTGCTTGTGCCCATGCTGGATTGGTGGATGAAGGTCTGGACTACTTCGACAGAATGGAGATCGAATTCGGGATTGAGCCAAGGATTGAGCATTACGGATGCATGATTGACATGCTGAGCCGGGCTGGTCGACTTAACAATGCCGAGAAGCTGATCCACGAAATGCTCATCGTGCCAAATGCCGCGATATACAGGTCTCTGATCCGGGCCTGTGGCATTCATGGCAAGCTGGAGCTCGGTGAGAAGATGATCGCAGAATTGATGCGACTTGAACCGGATGACAGTGGAAACCATGTCCTGATTTCAAACTTCTATGCGAGAACGAACCGATGGGAGGATGCCAAGAAGGCGAGGAAGGAGATGAAGTCCATGGGCATTGACAAGAACCCTGGATCAAGCCTTGTAGACATCAATGGAGTTCTCCATGAGTTCTTGGTGGGTGACAAGACACACCCTGCCTCAAAGGAGATATACACCATGGTTGAGGAGATAGAAACCAGGTTAATCGAGTGCGGACGCCGGTCGAGCACCTCGTCTGCGTTGTTTGATGTCGAGGAGGAGGACAAGGCGGATACACTGTCCTACCACAGCGAGAGGCTCGCCATTGCCTTTGCTCTGATCGCTTCCAATCCAGGAGCTCCCATTAGGATCATCAAGAATCTCCGGGTGTGTGCCGATTGCCATGAGAGCGCAAAGCTTGTATCTCGGGTGTATGGTAGAGAGATTGTCATGAGGGACCGTACCCGGTTCCATCACTTCAGAGACGGGGTGTGTTCTTGTGGAGATTTCTGGTAAATACTCGTTGTGTTGTATTGTACATTATACAGTGTAATGTGCTGTAGA ] [-] EMBL CB657750 [ TGGACTACTTCGACAGAATGGAGATCGAATTCGGGATTGAGCCAAGGATTGAGCATTACGGATGCATGATTGACATGCTGAGCCGGGCTGGTCGACTTAACAATGCCGAGAAGCTGATCCACGAAATGCTCATCGTGCCAAATGCCGCGATATACAGGTCTCTGATCCGGGCCTGTGGCATTCATGGCAAGCTGGAGCTCGGTGAGAAGATGATCGCAGAATTGATGCGACTTGAACCGGATGACAGTGGAAACCATGTCCTGATTTCAAACTTCTATGCGAGAACGAACCGATGGGAGGATGCCAAGAAGGCGAGGAAGGAGATGAAGTCCATGGGCATTGACAAGAACCCTGGATCAAGCCTTGTAGACATCAATGGAGTTCTCCATGAGTTCTTGGTGGGTGACAAGACACACCCTGCCTCAAAGGAGATATACACCATGGTTGAGGAGATAGAAACCAGGTTAATCGAGTGCGGACGCCGGTCGAGCACCTCGTCTGCGTTGTTTGATGTCGAGGAGGAGGACAAGGCGGATACACTGTCCTACCACAGCGAGAGGCTCGCCATTGCCTTTGCTCTGATCGCTTCCAATCCAGGAGCTCCCATTAGGATCATCAAGAATCTCCGGGTGTGTGCCGATTGCCATGAGAGCGCAAAGCTTGTATCTCGGGTGTATGGTAGAGAGATTGTCATGAGGGACCGTACCCGGTTCCATCACTTCAGAGACGGGGTGTGTTCTTGTGGAGATTTCTGGTAAATACTCGTTGTGTTGTATTGTGCATTATACAGTGTAATGTGCTGTAGATTTCTCT] consensusID : consensus_5807#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 816 fasta sequence [GCCTCCGGCCCTCGCCCTCGCGCTCGCCACCCATTCGGTCAAATTCCTCGGCGCCCATGCTGCCTCCTGCGACCGCGTCCTCGGTGCCGCGCTGCTCGGCGTCTTCGCGCGCTGCGGCAGGATCGCCTCATGCCGCCGGGTGTTCGACCGGATCGCGCACCCCGACCTGCCGGCCTGGAACGCGCTGCTCTCCGCCTACGCGCGTCTTCGTGCCAGGGACGTGGCCTGCGCCACCTCTGCGGCGGATGCAATCCTCGAGCTGTTTGTGCGGATGCTATCCTTAGCCATTGAACCCAACGAGATCACGCTCGTCGCCGTCATCGGCGCGTGCGGCGAGCTTGGCGCTGTCAGCCACGGGGTGTGGGCGCACACCTATGCCGTGAAGCGCCGGCTCGCCGTCAACTGCATCGTGGCCACGGCGCTTGTGGAGATGTATGCCGGGTGCGGGAGGCTGGACCTGGCCGAGCAGGTCTTTGCAGCCGCTTCGGACAGGGACACGCGCTGCTACAATGCGATGCTCCATGGCTTGGCAGTCCATGGCCATGGCCGTGCTGCCCTCTCCCTGTTGGACAGAATGCACGGTGCGGGCGTGCCGGTGGATGGCGTCACTGTGCTATCCGTGATGTGTGCTTGTGCCCATGCTGGATTGGTGGATGAAGGTCTGGACTACTTCGACAGAATGGAGATCGAATTCGGGATTGAGCCAAGGATTGAGCATTACNGATGCATGATTGACATGCTGAGCCGGGCTGGTCGACTTAACAATGCCGAGAAGCTGATCCACGAAATGCTCATCGTGCCAAATGCCGCGATATA] [+] EMBL CB657749 [GCCTCCGGCCCTCGCCCTCGCGCTCGCCACCCATTCGGTCAAATTCCTCGGCGCCCATGCTGCCTCCTGCGACCGCGTCCTCGGTGCCGCGCTGCTCGGCGTCTTCGCGCGCTGCGGCAGGATCGCCTCATGCCGCCGGGTGTTCGACCGGATCGCGCACCCCGACCTGCCGGCCTGGAACGCGCTGCTCTCCGCCTACGCGCGTCTTCGTGCCAGGGACGTGGCCTGCGCCACCTCTGCGGCGGATGCAATCCTCGAGCTGTTTGTGCGGATGCTATCCTTAGCCATTGAACCCAACGAGATCACGCTCGTCGCCGTCATCGGCGCGTGCGGCGAGCTTGGCGCTGTCAGCCACGGGGTGTGGGCGCACACCTATGCCGTGAAGCGCCGGCTCGCCGTCAACTGCATCGTGGCCACGGCGCTTGTGGAGATGTATGCCGGGTGCGGGAGGCTGGACCTGGCCGAGCAGGTCTTTGCAGCCGCTTCGGACAGGGACACGCGCTGCTACAATGCGATGCTCCATGGCTTGGCAGTCCATGGCCATGGCCGTGCTGCCCTCTCCCTGTTGGACAGAATGCACGGTGCGGGCGTGCCGGTGGATGGCGTCACTGTGCTATCCGTGATGTGTGCTTGTGCCCATGCTGGATTGGTGGATGAAGGTCTGGACTACTTCGACAGAATGGAGATCGAATTCGGGATTGAGCCAAGGATTGAGCATTACNGATGCATGATTGACATGCTGAGCCGGGCTGGTCGACTTAACAATGCCGAGAAGCTGATCCACGAAATGCTCATCGTGCCAAATGCCGCGATATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5807#0 GGTGCACATGGGCCCAGCAACCGCAGCCGCGGAGGCAGCACTCGCCCGCCGCGCCGCCGA 60 consensus_5807#1 ------------------------------------------------------------ consensus_5807#0 CCCGCTGCCCGCGCTCCGCCGCCGCGACGCGCTCCCGCTCCCGGCGCGCCTCTTCGCGCA 120 consensus_5807#1 ------------------------------------------------------------ consensus_5807#0 GCTCCACGCTCTCGTCCTCACCGCCGGCCTCGCGCGCCATTCCCCCAACTTCTCCCTCCT 180 consensus_5807#1 ------------------------------------------------------------ consensus_5807#0 CCTCCGCCTCGCCTCCCCTCTCCTCCCCGTCTCCCACCGCCTCCGCCTCCTCCTCTCCTC 240 consensus_5807#1 ------------------------------------------------------------ consensus_5807#0 CCCGCTCCCGCCCACCACCTTCCTCGCCAACTCCCTCCTCCTCGCCTCCTCCTCCTCCCG 300 consensus_5807#1 ------------------------------------------------------------ consensus_5807#0 CTGCCTCCCCTCCGCGCTCTCCCTCTACGCCCTCCTCTTCCTCTCCTCCTCGCCGCCGCT 360 consensus_5807#1 ------------------------------------------------------------ consensus_5807#0 CCTCCGCCCCAACGCCTTCACCTACCCGCCGCTGTTCCGCGCCGCGCCTCCGGCCCTCGC 420 consensus_5807#1 ---------------------------------------------GCCTCCGGCCCTCGC 15 *************** consensus_5807#0 CCTCGCGCTCGCCACCCATTCGGTCAAATTCCTCGGCGCCCATGCTGCCTCCTGCGACCG 480 consensus_5807#1 CCTCGCGCTCGCCACCCATTCGGTCAAATTCCTCGGCGCCCATGCTGCCTCCTGCGACCG 75 ************************************************************ consensus_5807#0 CGTCCTCGGTGCCGCGCTGCTCGGCGTCTTCGCGCGCTGCGGCAGGATCGCCTCATGCCG 540 consensus_5807#1 CGTCCTCGGTGCCGCGCTGCTCGGCGTCTTCGCGCGCTGCGGCAGGATCGCCTCATGCCG 135 ************************************************************ consensus_5807#0 CCGGGTGTTCGACCGGATCGCGCACCCCGACCTGCCGGCCTGGAACGCGCTGCTCTCCGC 600 consensus_5807#1 CCGGGTGTTCGACCGGATCGCGCACCCCGACCTGCCGGCCTGGAACGCGCTGCTCTCCGC 195 ************************************************************ consensus_5807#0 CTACGCGCGTCTTCGTGCCAGGGACGTGGCCTGCGCCACCTCTGCGGCGGATGCAATCCT 660 consensus_5807#1 CTACGCGCGTCTTCGTGCCAGGGACGTGGCCTGCGCCACCTCTGCGGCGGATGCAATCCT 255 ************************************************************ consensus_5807#0 CGAGCTGTTTGTGCGGATGCTATCCTTAGCCATTGAACCCAACGAGATCACGCTCGTCGC 720 consensus_5807#1 CGAGCTGTTTGTGCGGATGCTATCCTTAGCCATTGAACCCAACGAGATCACGCTCGTCGC 315 ************************************************************ consensus_5807#0 CGTCATCGGCGCGTGCGGCGAGCTTGGCGCTGTCAGCCACGGGGTGTGGGCGC------- 773 consensus_5807#1 CGTCATCGGCGCGTGCGGCGAGCTTGGCGCTGTCAGCCACGGGGTGTGGGCGCACACCTA 375 ***************************************************** consensus_5807#0 -----------------------------------------------TTGTGGAGATGTA 786 consensus_5807#1 TGCCGTGAAGCGCCGGCTCGCCGTCAACTGCATCGTGGCCACGGCGCTTGTGGAGATGTA 435 ************* consensus_5807#0 TGCCGGGTGCGGGAGGCTGGACCTGGCCGAGCAGGTCTTTGCAGCCGCTTCGGACAGGGA 846 consensus_5807#1 TGCCGGGTGCGGGAGGCTGGACCTGGCCGAGCAGGTCTTTGCAGCCGCTTCGGACAGGGA 495 ************************************************************ consensus_5807#0 CACGCGCTGCTACAATGCGATGCTCCATGGCTTGGCAGTCCATGGCCATGGCCGTGCTGC 906 consensus_5807#1 CACGCGCTGCTACAATGCGATGCTCCATGGCTTGGCAGTCCATGGCCATGGCCGTGCTGC 555 ************************************************************ consensus_5807#0 CCTCTCCCTGTTGGACAGAATGCACAGTGCGGGCGTGCCGGTGGATGGCGTCACTGTGCT 966 consensus_5807#1 CCTCTCCCTGTTGGACAGAATGCACGGTGCGGGCGTGCCGGTGGATGGCGTCACTGTGCT 615 ************************* ********************************** consensus_5807#0 ATCCGTGATGTGTGCTTGTGCCCATGCTGGATTGGTGGATGAAGGTCTGGACTACTTCGA 1026 consensus_5807#1 ATCCGTGATGTGTGCTTGTGCCCATGCTGGATTGGTGGATGAAGGTCTGGACTACTTCGA 675 ************************************************************ consensus_5807#0 CAGAATGGAGATCGAATTCGGGATTGAGCCAAGGATTGAGCATTACGGATGCATGATTGA 1086 consensus_5807#1 CAGAATGGAGATCGAATTCGGGATTGAGCCAAGGATTGAGCATTACNGATGCATGATTGA 735 ********************************************** ************* consensus_5807#0 CATGCTGAGCCGGGCTGGTCGACTTAACAATGCCGAGAAGCTGATCCACGAAATGCTCAT 1146 consensus_5807#1 CATGCTGAGCCGGGCTGGTCGACTTAACAATGCCGAGAAGCTGATCCACGAAATGCTCAT 795 ************************************************************ consensus_5807#0 CGTGCCAAATGCCGCGATATACAGGTCTCTGATCCGGGCCTGTGGCATTCATGGCAAGCT 1206 consensus_5807#1 CGTGCCAAATGCCGCGATATA--------------------------------------- 816 ********************* consensus_5807#0 GGAGCTCGGTGAGAAGATGATCGCAGAATTGATGCGACTTGAACCGGATGACAGTGGAAA 1266 consensus_5807#1 ------------------------------------------------------------ consensus_5807#0 CCATGTCCTGATTTCAAACTTCTATGCGAGAACGAACCGATGGGAGGATGCCAAGAAGGC 1326 consensus_5807#1 ------------------------------------------------------------ consensus_5807#0 GAGGAAGGAGATGAAGTCCATGGGCATTGACAAGAACCCTGGATCAAGCCTTGTAGACAT 1386 consensus_5807#1 ------------------------------------------------------------ consensus_5807#0 CAATGGAGTTCTCCATGAGTTCTTGGTGGGTGACAAGACACACCCTGCCTCAAAGGAGAT 1446 consensus_5807#1 ------------------------------------------------------------ consensus_5807#0 ATACACCATGGTTGAGGAGATAGAAACCAGGTTAATCGAGTGCGGACGCCGGTCGAGCAC 1506 consensus_5807#1 ------------------------------------------------------------ consensus_5807#0 CTCGTCTGCGTTGTTTGATGTCGAGGAGGAGGACAAGGCGGATACACTGTCCTACCACAG 1566 consensus_5807#1 ------------------------------------------------------------ consensus_5807#0 CGAGAGGCTCGCCATTGCCTTTGCTCTGATCGCTTCCAATCCAGGAGCTCCCATTAGGAT 1626 consensus_5807#1 ------------------------------------------------------------ consensus_5807#0 CATCAAGAATCTCCGGGTGTGTGCCGATTGCCATGAGAGCGCAAAGCTTGTATCTCGGGT 1686 consensus_5807#1 ------------------------------------------------------------ consensus_5807#0 GTATGGTAGAGAGATTGTCATGAGGGACCGTACCCGGTTCCATCACTTCAGAGACGGGGT 1746 consensus_5807#1 ------------------------------------------------------------ consensus_5807#0 GTGTTCTTGTGGAGATTTCTGGTAAATACTCGTTGTGTTGTATTGTACATTATACAGTGT 1806 consensus_5807#1 ------------------------------------------------------------ consensus_5807#0 AATGTGCTGTAGATTTCTCT 1826 consensus_5807#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||