cluster # 5810

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Oryza sativa
cluster # 5810 cluster # 5810 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5810#0 length = 585 sequences # 1

consensus_5810#1 length = 564 sequences # 2

consensusID : consensus_5810#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence

                              [AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGCAAGAACAGCGCTGACGGCGAGTACGAGATGAAGCGGCCGGGAAGCTCGACGGCGCCGGCGCATTCAGCGTGCCGCTCGCCGCCGACCTCCGCGGCGCCGACAGCGTGGCTCAGCTCCACAGCGCGGCGAAACATAACGCGGCATGCCCCGGTCAGGAGCCGTCGAGGATCATGCAGCTGTCGGAGAGAACCTTCGTTGCCGTCGCCGGCAAGACCCACTGCACGTCGCCGGTGTGCGCGTCGGCGACCATCTGCAAGCCCATCTGCCAGCCGCGTCGTCGACCAAGCCGGCGCCCAAGCCGCACCCTGGCCAGCCGCCGCACCCAACGCCGATGCTGACGCCGTCGTACGGAACGCCGAGCCCGTACCACTCGCCGGCGAGGAACTAATTAATTAATGCCGTCGAGCTCACACATTATTATGATTTTTTTTCTGCTCTGCACTAGCTTAATGCCATTTATGATTTATTGTTGTCAAGGTTGGAGTAGCGCAGATAGCTTATGTATTCGTTGATCTTGAGTTTCTTGGGTCGATCGAATAAAGTT]

[+] EMBL AK060275             [AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGCAAGAACAGCGCTGACGGCGAGTACGAGATGAAGCGGCCGGGAAGCTCGACGGCGCCGGCGCATTCAGCGTGCCGCTCGCCGCCGACCTCCGCGGCGCCGACAGCGTGGCTCAGCTCCACAGCGCGGCGAAACATAACGCGGCATGCCCCGGTCAGGAGCCGTCGAGGATCATGCAGCTGTCGGAGAGAACCTTCGTTGCCGTCGCCGGCAAGACCCACTGCACGTCGCCGGTGTGCGCGTCGGCGACCATCTGCAAGCCCATCTGCCAGCCGCGTCGTCGACCAAGCCGGCGCCCAAGCCGCACCCTGGCCAGCCGCCGCACCCAACGCCGATGCTGACGCCGTCGTACGGAACGCCGAGCCCGTACCACTCGCCGGCGAGGAACTAATTAATTAATGCCGTCGAGCTCACACATTATTATGATTTTTTTTCTGCTCTGCACTAGCTTAATGCCATTTATGATTTATTGTTGTCAAGGTTGGAGTAGCGCAGATAGCTTATGTATTCGTTGATCTTGAGTTTCTTGGGTCGATCGAATAAAGTT]




>consensus_5810#0
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGCAAGAACAGCGCTGACGGCG
AGTACGAGATGAAGCGGCCGGGAAGCTCGACGGCGCCGGCGCATTCAGCGTGCCGCTCGC
CGCCGACCTCCGCGGCGCCGACAGCGTGGCTCAGCTCCACAGCGCGGCGAAACATAACGC
GGCATGCCCCGGTCAGGAGCCGTCGAGGATCATGCAGCTGTCGGAGAGAACCTTCGTTGC
CGTCGCCGGCAAGACCCACTGCACGTCGCCGGTGTGCGCGTCGGCGACCATCTGCAAGCC
CATCTGCCAGCCGCGTCGTCGACCAAGCCGGCGCCCAAGCCGCACCCTGGCCAGCCGCCG
CACCCAACGCCGATGCTGACGCCGTCGTACGGAACGCCGAGCCCGTACCACTCGCCGGCG
AGGAACTAATTAATTAATGCCGTCGAGCTCACACATTATTATGATTTTTTTTCTGCTCTG
CACTAGCTTAATGCCATTTATGATTTATTGTTGTCAAGGTTGGAGTAGCGCAGATAGCTT
ATGTATTCGTTGATCTTGAGTTTCTTGGGTCGATCGAATAAAGTT

consensusID : consensus_5810#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 564
fasta sequence

                              [GGGCCAGGAGCCCGTCCGAAGGTTCCATCCACTGTCGGAGCGCACCTTCGTCGCCGTCGCCGGCAGAGACCCTCTATGTGTCCCGGTGTGCGCGTCGGCGACCATCTGCGAGCCCATCAAGAAGCACTTCTTCGACCACTTCCACCACAACAAGCCGGCGCCCGCCGCACCGTCGACCAAGCCAGCGCCCAAGCCGCACCCCGACCAGCCGCCGCACCCTAAGCCGACGCCGACGTACGGAACACCGAGCCCGTACCACCCGCCGGCGAGGAACTAATTGAGCCGTCGATCGAGCTCACACATTATTATGATTCTTTTTAAATTTCTGCTCTGCGTTAGCTTAATGCCATTATGATATATTGTTGTCAAGGTTGGAGTAGCGCAGACAGCTTTGTGTTAGTTGATTTTGAGTTTCTTGGGTCGATCGAATAAGGTTTCAGGTTGATTTGTGAGGTTTGAGTCAATACAGGTGTGTTAGTATCAGGTAGATTTGTCTCAGGATTCGTTTGCTTGTTTGTTGGAATTAATTTAATTAATATGATATTTATTTGTGTAAAAAAAAAA]

[+] EMBL BI805240             [GGGCCAGGAGCCCGTCCGAAGGTTCCATCCACTGTCGGAGCGCACCTTCGTCGCCGTCGCCGGCAGAGACCCTCTATGTGTCCCGGTGTGCGCGTCGGCGACCATCTGCGAGCCCATCAAGAAGCACTTCTTCGACCACTTCCACCACAACAAGCCGGCGCCCGCCGCACCGTCGACCAAGCCAGCGCCCAAGCCGCACCCCGACCAGCCGCCGCACCCTAAGCCGACGCCGACGTACGGAACACCGAGCCCGTACCACCCGCCGGCGAGGAACTAATTGAGCCGTCGATCGAGCTCACACATTATTATGATTCTTTTTAAATTTCTGCTCTGCGTTAGCTTAATGCCATTATGATATATTGTTGTCAAGGTTGGAGTAGCGCAGACAGCTTTGTGTTAGTTGATTTTGAGTTTCTTGGGTCGATCGAATAAGGTTTCAGGTTGATTTGTGAGGTTTGAGTCAATACAGGTGTGTTAGTATCAGGTAGATTTGTCTCAGGATTCGTTTGCTTGTTTGTTGGAATTAATTTAATTAATATGATATTTATTTGTGTAAAAA     ]
[+] EMBL AU097260             [                                                                                                                                                                                                                                                                                                                                       GCTCTGCGTTAGCTTAATGCCATTATGATATATTGTTGTCAAGGTTGGAGTAGCGCAGACAGCTTTGTGTTAGTTGATTTTGAGTTTCTTGGGTCGATCGAATAAGGTTTCAGGTTGATTTGTGAGGTTTGAGTCAATACAG  GTGTTAGTATCAGGTAGATTTGTCTCAGGATTCGTTTGCTTGTTTGTTGGAATTAATTTAATTAATATGATATTTATTTGTGTAAAAAAAAAA]




>consensus_5810#1
GGGCCAGGAGCCCGTCCGAAGGTTCCATCCACTGTCGGAGCGCACCTTCGTCGCCGTCGC
CGGCAGAGACCCTCTATGTGTCCCGGTGTGCGCGTCGGCGACCATCTGCGAGCCCATCAA
GAAGCACTTCTTCGACCACTTCCACCACAACAAGCCGGCGCCCGCCGCACCGTCGACCAA
GCCAGCGCCCAAGCCGCACCCCGACCAGCCGCCGCACCCTAAGCCGACGCCGACGTACGG
AACACCGAGCCCGTACCACCCGCCGGCGAGGAACTAATTGAGCCGTCGATCGAGCTCACA
CATTATTATGATTCTTTTTAAATTTCTGCTCTGCGTTAGCTTAATGCCATTATGATATAT
TGTTGTCAAGGTTGGAGTAGCGCAGACAGCTTTGTGTTAGTTGATTTTGAGTTTCTTGGG
TCGATCGAATAAGGTTTCAGGTTGATTTGTGAGGTTTGAGTCAATACAGGTGTGTTAGTA
TCAGGTAGATTTGTCTCAGGATTCGTTTGCTTGTTTGTTGGAATTAATTTAATTAATATG
ATATTTATTTGTGTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5810#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGCAAGAACAGCGCTGACGGCG 60
consensus_5810#1      ------------------------------------------------------------
                                                                                  

consensus_5810#0      AGTACGAGATGAAGCGGCCGGGAAGCTCGACGGCGCCGGCGCATTCAGCGTGCCGCTCGC 120
consensus_5810#1      ------------------------------------------------------------
                                                                                  

consensus_5810#0      CGCCGACCTCCGCGGCGCCGACAGCGTGGCTCA--GCTCCACAGCGCGGCGAAACATAAC 178
consensus_5810#1      --------------GGGCCAGGAGCCCGTCCGAAGGTTCCATCCACTGTCGGAGCGCACC 46
                                    * ***   ***  * *  *  * ****      * ** * *  * *

consensus_5810#0      GCGGCATGCCCCGGTCAGGAGCCGTCGAGGATCATGCAGCTGTCGGAGAGAACCTTCGTT 238
consensus_5810#1      ----TTCGTCGCCGTC----GCCGGCAGAGACCCTCTATGTGTCCCGGTGTGCG--CGTC 96
                             * * * ***    **** *   ** * *  *  ****   * *  *   *** 

consensus_5810#0      GCCG-TCGCCGGCAAGACCCACTGCACGTCGCCGGTGTGCGCGTCGGCGACCATCTGCAA 297
consensus_5810#1      GGCGACCATCTGCGAG-CCCATCAAGAAGCACTTCTTCGACCACTT-CCACCA-CAACAA 153
                      * **  *  * ** ** ****        * *   *  *  *     * **** *  ***

consensus_5810#0      GCCCATCTGCCAGCCGCGTCGTCGACCAAGCCGGCGCCCAAGCCGCACCCTGGCCAGCCG 357
consensus_5810#1      GCCGGC--GCCCGCCGCACCGTCGACCAAGCCAGCGCCCAAGCCGCACCCCGACCAGCCG 211
                      ***     *** *****  ************* ***************** * *******

consensus_5810#0      CCGCACCCAACGCCGATGCTGACGCCGTCGTACGGAACGCCGAGCCCGTACCACTCGCCG 417
consensus_5810#1      CCGCACCCTAAGCCGA------CGCCGACGTACGGAACACCGAGCCCGTACCACCCGCCG 265
                      ******** * *****      ***** ********** *************** *****

consensus_5810#0      GCGAGGAACTAATTAATTAATGCCGTCGAGCTCACACATTATTATGATTTTTTTT----- 472
consensus_5810#1      GCGAGGAACTAATTGAGCCGT-CGATCGAGCTCACACATTATTATGATTCTTTTTAAATT 324
                      ************** *    * *  ************************ *****     

consensus_5810#0      -CTGCTCTGCACTAGCTTAATGCCATTTATGATTTATTGTTGTCAAGGTTGGAGTAGCGC 531
consensus_5810#1      TCTGCTCTGCGTTAGCTTAATGCCATT-ATGATATATTGTTGTCAAGGTTGGAGTAGCGC 383
                       *********  *************** ***** **************************

consensus_5810#0      AGATAGCTTATGTATTCGTTGATCTTGAGTTTCTTGGGTCGATCGAATAAAGTT------ 585
consensus_5810#1      AGACAGCTT-TGTGTTAGTTGATTTTGAGTTTCTTGGGTCGATCGAATAAGGTTTCAGGT 442
                      *** ***** *** ** ****** ************************** ***      

consensus_5810#0      ------------------------------------------------------------
consensus_5810#1      TGATTTGTGAGGTTTGAGTCAATACAGGTGTGTTAGTATCAGGTAGATTTGTCTCAGGAT 502
                                                                                  

consensus_5810#0      ------------------------------------------------------------
consensus_5810#1      TCGTTTGCTTGTTTGTTGGAATTAATTTAATTAATATGATATTTATTTGTGTAAAAAAAA 562
                                                                                  

consensus_5810#0      --
consensus_5810#1      AA 564