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Oryza sativa
cluster # 5811 cluster # 5811       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5811#0 length = 1299 sequences # 3  

consensusID : consensus_5811#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1299
fasta sequence
                              [CAGAAGAAGCGCGCTGTCCACTGTCCACACCCGCACACGCCGCTTCCCACCACGGCGGCGCTAAACCCTTTCGAAAGAATCCCCAAATCTCCCACGCTCCAAAGCCCGAAACCCTAGCTCCTGTTCACATGGCGCCAGGGCTCCAGCGCTTCACCGACATCGCCGGGGACGGCGGGCCCCGCCTCGACGCCGCCTCCGGCGAGGAGCTCCTCCGCATGGACCGCGCCGCCTCCGTCGCCCTCGGCCGCCGCGCGCCGGAGCCCCCGGGTACCCTGTTCGTCACCACCAGGAGGGTGATTTGGCTTAGCGAGACGGAGAAGGGCCAAGGCTATGCGGTGGACTTCCTCGCCATCACGCTCCATGCTGTGTCGCGCGACCTGGAGGCGTACCCCTCCCCTTGCATCTACACGCAGATTGACGCAGAAGATGGCTCTGATGAGGAGGCTGGTGGATCAGATTTCGAAGCAAATGGTGATCTGCAGCTAGCAAAAGTCTCTGAGATGCGCATTATACTTTCAGACCCTGGTCAACTTGATGCACTTTTCGATGTCTTCTGCCATTGTGCTGAACTGAACCCTGATCCTAATGCTGTGCGCAATGAAGAGAATGGCTGGTCCGGTGGTGAAAATATGGCTGAGGGTGGGTGGATTCATGGTGATGAAGACATGATTGATGGAAATGATCTTGAAGCCCACATGTTCTTTACGAACTTGATAGGCCAAAATGGTCTACATGACCTTGGTCGTTCTGTACGTGAGCTTCAAATTGATGACCAGCGTTTCGAGGATGCTGAGGAAGAAGACGAGATCCAAGAAAATGGACATTAGAAGCAGAATGTTCATTTTACTTGTTCCGTTCCTTGAGGGGACTATGTCATTGGTTCGTCTGTAGATTACCACTGATGCTGCTTGGTTCGCAATACTTGCTTCTTCTACTTCCTTTCCCTCTTTCTTGTTCTATAGGATCAACATCTCTAGGGAGCATCGATGGTAACTTTTGTGAGAAAAAGGTCTTGCTGCTGGTCAAGAATGTAACTTGTAGAGCATGATGGTGAATCGAGTGAAATTAGTTCGATACTTTTGATCTGACAGATAGGAGGGGAAATCGGGAAAAGAAATATGTTCTCTTTTCCCTTGTATATCATGGCACTGTTGTGTTATCATTTAGGATTTAAAGATTTAAATGCCAAACTGGATGGAATTGGGACATATTTCTACCTTTCCCTATCTTTACAATCTGAAAACACCGAACGACACCCATGTCAATTGTCATGTGAAGTCGTGGGTTATTAGTTGTCCC]

[+] EMBL AK070179             [CAGAAGAAGCGCGCTGTCCACTGTCCACACCCGCACACGCCGCTTCCCACCACGGCGGCGCTAAACCCTTTCGAAAGAATCCCCAAATCTCCCACGCTCCAAAGCCCGAAACCCTAGCTCCTGTTCACATGGCGCCAGGGCTCCAGCGCTTCACCGACATCGCCGGGGACGGCGGGCCCCGCCTCGACGCCGCCTCCGGCGAGGAGCTCCTCCGCATGGACCGCGCCGCCTCCGTCGCCCTCGGCCGCCGCGCGCCGGAGCCCCCGGGTACCCTGTTCGTCACCACCAGGAGGGTGATTTGGCTTAGCGAGACGGAGAAGGGCCAAGGCTATGCGGTGGACTTCCTCGCCATCACGCTCCATGCTGTGTCGCGCGACCTGGAGGCGTACCCCTCCCCTTGCATCTACACGCAGATTGACGCAGAAGATGGCTCTGATGAGGAGGCTGGTGGATCAGATTTCGAAGCAAATGGTGATCTGCAGCTAGCAAAAGTCTCTGAGATGCGCATTATACTTTCAGACCCTGGTCAACTTGATGCACTTTTCGATGTCTTCTGCCATTGTGCTGAACTGAACCCTGATCCTAATGCTGTGCGCAATGAAGAGAATGGCTGGTCCGGTGGTGAAAATATGGCTGAGGGTGGGTGGATTCATGGTGATGAAGACATGATTGATGGAAATGATCTTGAAGCCCACATGTTCTTTACGAACTTGATAGGCCAAAATGGTCTACATGACCTTGGTCGTTCTGTACGTGAGCTTCAAATTGATGACCAGCGTTTCGAGGATGCTGAGGAAGAAGACGAGATCCAAGAAAATGGACATTAGAAGCAGAATGTTCATTTTACTTGTTCCGTTCCTTGAGGGGACTATGTCATTGGTTCGTCTGTAGATTACCACTGATGCTGCTTGGTTCGCAATACTTGCTTCTTCTACTTCCTTTCCCTCTTTCTTGTTCTATAGGATCAACATCTCTAGGGAGCATCGATGGTAACTTTTGTGAGAAAAAGGTCTTGCTGCTGGTCAAGAATGTAACTTGTAGAGCATGATGGTGAATCGAGTGAAATTAGTTCGATACTTTTGATCTGACAGATAGGAGGGGAAATCGGGAAAAGAAATATGTTCTCTTTTCCCTTGTATATCATGGCACTGTTGTGTTATCATTTAGGATTTAAAGA                                                                                                                          ]
[+] EMBL CB657978             [                                                     GGCGGCGCTAAACCCTTTCGAAAGAATCCCCAAATCTCCCACGCTCCAAAGCCCGAAACCCTAGCTCCTGTTCACATGGCGCCAGGGCTCCAGCGCTTCACCGACATCGCCGGGGACGGCGGGCCCCGCCTCGACGCCGCCTCCGGTGAGGAGCTCCTCCGCATGGACCGCGCCGCCTCCGTCGCCCTCGGACGCTGCGCGCCGGAGCCCCCGGGTACCCTGTTCGTCATTACCAGGAGGGTGATTTGGCTTAGTGAGACGGAGAAGGGCCAAGGCTATGCGGTGGAATTGCTCGCCATCACGCTCCATGCTGTGTAGCGCGACCTGGAGGAGTAACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CB657979             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATCCTAATGCTGTGCGCAATGAAGAGAATGGCTGGTCCGGTGGTGAAAATATGGCTGAGGGTGGGTGGATTCATGGTGATGAAGACATGATTGATGGAAATGATCTTGAAGCCCACATGTTCTTTACGAACTTGATAGGCCAAAATGGTCTACATGACCTTGGTCGTTCTGTACGTGAGCTTCAAATTGATGACCAGCGTTTCGAGGATGCTGAGGAAGAAGACGAGATCCAAGAAAATGGACATTAGAAGCAGAATGTTCATTTTACTTGTTCCGTTCCTTGAGGGGACTATGTCATTGGTTCGTCTGTAGATTACCACTGATGCTGCTTGGTTCGCAATACTTGCTTCTTCTACTTCCTTTCCCTCTTTCTTGTTCTATAGGATCAACATCTCTAGGGAGCATCGATGGTAACTTTTGTGAGAAAAAGGTCTTGCTGCTGGTCAAGAATGTAACTTGTAGAGCATGATGGTGAATCGAGTGAAATTAGTTCGATACTTTTGATCTGACAGATAGGAGGGGAAATCGGGAAAAGAAATATGTTCTCTTTTCCCTTGTATATCATGGCACTGTTGTGTTATCATTTAGGATTTAAAGATTTAAATGCCAAACTGGATGGAATTGGGACATATTTCTACCTTTCCCTATCTTTACAATCTGAAAACACCGAACGACACCCATGTCAATTGTCATGTGAAGTCGTGGGTTATTAGTTGTCCC]


>consensus_5811#0 CAGAAGAAGCGCGCTGTCCACTGTCCACACCCGCACACGCCGCTTCCCACCACGGCGGCG CTAAACCCTTTCGAAAGAATCCCCAAATCTCCCACGCTCCAAAGCCCGAAACCCTAGCTC CTGTTCACATGGCGCCAGGGCTCCAGCGCTTCACCGACATCGCCGGGGACGGCGGGCCCC GCCTCGACGCCGCCTCCGGCGAGGAGCTCCTCCGCATGGACCGCGCCGCCTCCGTCGCCC TCGGCCGCCGCGCGCCGGAGCCCCCGGGTACCCTGTTCGTCACCACCAGGAGGGTGATTT GGCTTAGCGAGACGGAGAAGGGCCAAGGCTATGCGGTGGACTTCCTCGCCATCACGCTCC ATGCTGTGTCGCGCGACCTGGAGGCGTACCCCTCCCCTTGCATCTACACGCAGATTGACG CAGAAGATGGCTCTGATGAGGAGGCTGGTGGATCAGATTTCGAAGCAAATGGTGATCTGC AGCTAGCAAAAGTCTCTGAGATGCGCATTATACTTTCAGACCCTGGTCAACTTGATGCAC TTTTCGATGTCTTCTGCCATTGTGCTGAACTGAACCCTGATCCTAATGCTGTGCGCAATG AAGAGAATGGCTGGTCCGGTGGTGAAAATATGGCTGAGGGTGGGTGGATTCATGGTGATG AAGACATGATTGATGGAAATGATCTTGAAGCCCACATGTTCTTTACGAACTTGATAGGCC AAAATGGTCTACATGACCTTGGTCGTTCTGTACGTGAGCTTCAAATTGATGACCAGCGTT TCGAGGATGCTGAGGAAGAAGACGAGATCCAAGAAAATGGACATTAGAAGCAGAATGTTC ATTTTACTTGTTCCGTTCCTTGAGGGGACTATGTCATTGGTTCGTCTGTAGATTACCACT GATGCTGCTTGGTTCGCAATACTTGCTTCTTCTACTTCCTTTCCCTCTTTCTTGTTCTAT AGGATCAACATCTCTAGGGAGCATCGATGGTAACTTTTGTGAGAAAAAGGTCTTGCTGCT GGTCAAGAATGTAACTTGTAGAGCATGATGGTGAATCGAGTGAAATTAGTTCGATACTTT TGATCTGACAGATAGGAGGGGAAATCGGGAAAAGAAATATGTTCTCTTTTCCCTTGTATA TCATGGCACTGTTGTGTTATCATTTAGGATTTAAAGATTTAAATGCCAAACTGGATGGAA TTGGGACATATTTCTACCTTTCCCTATCTTTACAATCTGAAAACACCGAACGACACCCAT GTCAATTGTCATGTGAAGTCGTGGGTTATTAGTTGTCCC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)