These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5813#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 773 fasta sequence [AGACCTAAAGCCTCAAATGCTTTACCTTTTGGCCTTGTAGTTCAGGATAGTGGTGCAAAGGTTTCTTCCACAAAGTTGTCTGATGAAAGACGAAGCGCCGGAGTACCAACATCAGAACTTGGCGATTTGGGGTTGGTTGATGAGCAATCCTTTACTGTACGTGACAACGATGCAGCGTCCAGAGAATATGGAGGGGTTAAGGGTGTGAGCATGAATAAAAGAGCAGTTCAACAAGAGAAGTTCTCAGCCCACCAGGTACCGCTACCACTCTTTATAAGCGATCAGAAAGCAGCTCCAGAAGTAAATTTGCATTTGAAGGAAGTCACTAACTTCAGACTAGAGGACTCTGATATCAGTAAAGGAAACTCTGGCACAAAGGAAGAAGATGTTAACTGCTTTAGCCCGCAAGCAACAGAGAGTAATCATGACAGAACAGTGTTTATTTCTGTGACAAACCTGGAAAATTCTAGTCGTTCTGATTTCATATTTGCGGCATCAACTGATCATAGTAAATTGCACTCACAAAGACGACCTAGCAAGAAAAAAATTGGAGGAATGAGTAATCATGCTAATTCTGTTGAAAGCCATCCGTCATCTGCCATTGGTCTTGCACACTCAGAAATCTCAAGGCAGCAATACACAGATTTACCTGCTCAATGGACCAAATACAACAAAACAGATCCTAAAACAGTTACAGTGAGTGTAGGACCAGCAATTAAGGAAAACATTGGACATCAAGAAGACTGTGAAACATGGCGTATAAGGGGGAACCA] [+] EMBL CB630695 [AGACCTAAAGCCTCAAATGCTTTACCTTTTGGCCTTGTAGTTCAGGATAGTGGTGCAAAGGTTTCTTCCACAAAGTTGTCTGATGAAAGACGAAGCGCCGGAGTACCAACATCAGAACTTGGCGATTTGGGGTTGGTTGATGAGCAATCCTTTACTGTACGTGACAACGATGCAGCGTCCAGAGAATATGGAGGGGTTAAGGGTGTGAGCATGAATAAAAGAGCAGTTCAACAAGAGAAGTTCTCAGCCCACCAGGTACCGCTACCACTCTTTATAAGCGATCAGAAAGCAGCTCCAGAAGTAAATTTGCATTTGAAGGAAGTCACTAACTTCAGACTAGAGGACTCTGATATCAGTAAAGGAAACTCTGGCACAAAGGAAGAAGATGTTAACTGCTTTAGCCCGCAAGCAACAGAGAGTAATCATGACAGAACAGTGTTTATTTCTGTGACAAACCTGGAAAATTCTAGTCGTTCTGATTTCATATTTGCGGCATCAACTGATCATAGTAAATTGCACTCACAAAGACGACCTAGCAAGAAAAAAATTGGAGGAATGAGTAATCATGCTAATTCTGTTGAAAGCCATCCGTCATCTGCCATTGGTCTTGCACACTCAGAAATCTCAAGGCAGCAATACACAGATTTACCTGCTCAATGGACCAAATACAACAAAACAGATCCTAAAACAGTTACAGTGAGTGTAGGACCAGCAATTAAGGAAAACATTGGACATCAAGAAGACTGTGAAACATGGCGTATAAGGGGGAACCA] [+] EMBL CF195700 [ GGCACNAAGGAAGAAGATGTTAACTGCTTTAGCCCGCAAGCAACAGAGAGTAATCATGACAGAACAGTGTTTATTTCTGTGACAAACCTGGAAAATTCTAGTCGTTCTGATTTCATATTTGCGGCATCAACTGATCATAGTAAATTGCACTCACAAAGACGACCTNNNAAGAAAAAAATTGGAGGAATGAGTAATCATGCTAATTCTGTTGAAAGCCATCCGTCATCTGCCATTGGTCTTGCACACTCAGNAATCTCAAGGCAGCAATACACAGATTTACCTGCTCAATGGANNNNNNACAACANNNCAGATCCTnnnnnagt ] consensusID : consensus_5813#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 313 fasta sequence [GGCACAAAGGAAGAAGATGTTAACTGCTTTAGCCCGCAAGCAACAGAGAGTAATCATGACAGAACAGTGTTTATTTCTGTGACAAACCTGGAAAATTCTAGTCGTTCTGATTTCATATTTGCGGCATCAACTGATCATAGTAAATTGCACTCACAAAGACGACCTAGNAAGAAAAAAATTGGAGGAATGAGTAATCATGCTAATTCTGTTGAAAGCCATCCGTCATCTGCCATTGGTCTTGCACACTNNNNNATCTNNNGGCNNNANNANNNAGATTTACCTGCTCANTGGACCANNTNCAACNNNNNAGATC] [+] EMBL CF195833 [GGCACAAAGGAAGAAGATGTTAACTGCTTTAGCCCGCAAGCAACAGAGAGTAATCATGACAGAACAGTGTTTATTTCTGTGACAAACCTGGAAAATTCTAGTCGTTCTGATTTCATATTTGCGGCATCAACTGATCATAGTAAATTGCACTCACAAAGACGACCTAGNAAGAAAAAAATTGGAGGAATGAGTAATCATGCTAATTCTGTTGAAAGCCATCCGTCATCTGCCATTGGTCTTGCACACTNNNNNATCTNNNGGCNNNANNANNNAGATTTACCTGCTCANTGGACCANNTNCAACNNNNNAGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5813#0 AGACCTAAAGCCTCAAATGCTTTACCTTTTGGCCTTGTAGTTCAGGATAGTGGTGCAAAG 60 consensus_5813#1 ------------------------------------------------------------ consensus_5813#0 GTTTCTTCCACAAAGTTGTCTGATGAAAGACGAAGCGCCGGAGTACCAACATCAGAACTT 120 consensus_5813#1 ------------------------------------------------------------ consensus_5813#0 GGCGATTTGGGGTTGGTTGATGAGCAATCCTTTACTGTACGTGACAACGATGCAGCGTCC 180 consensus_5813#1 ------------------------------------------------------------ consensus_5813#0 AGAGAATATGGAGGGGTTAAGGGTGTGAGCATGAATAAAAGAGCAGTTCAACAAGAGAAG 240 consensus_5813#1 ------------------------------------------------------------ consensus_5813#0 TTCTCAGCCCACCAGGTACCGCTACCACTCTTTATAAGCGATCAGAAAGCAGCTCCAGAA 300 consensus_5813#1 ------------------------------------------------------------ consensus_5813#0 GTAAATTTGCATTTGAAGGAAGTCACTAACTTCAGACTAGAGGACTCTGATATCAGTAAA 360 consensus_5813#1 ------------------------------------------------------------ consensus_5813#0 GGAAACTCTGGCACAAAGGAAGAAGATGTTAACTGCTTTAGCCCGCAAGCAACAGAGAGT 420 consensus_5813#1 ---------GGCACAAAGGAAGAAGATGTTAACTGCTTTAGCCCGCAAGCAACAGAGAGT 51 *************************************************** consensus_5813#0 AATCATGACAGAACAGTGTTTATTTCTGTGACAAACCTGGAAAATTCTAGTCGTTCTGAT 480 consensus_5813#1 AATCATGACAGAACAGTGTTTATTTCTGTGACAAACCTGGAAAATTCTAGTCGTTCTGAT 111 ************************************************************ consensus_5813#0 TTCATATTTGCGGCATCAACTGATCATAGTAAATTGCACTCACAAAGACGACCTAGCAAG 540 consensus_5813#1 TTCATATTTGCGGCATCAACTGATCATAGTAAATTGCACTCACAAAGACGACCTAGNAAG 171 ******************************************************** *** consensus_5813#0 AAAAAAATTGGAGGAATGAGTAATCATGCTAATTCTGTTGAAAGCCATCCGTCATCTGCC 600 consensus_5813#1 AAAAAAATTGGAGGAATGAGTAATCATGCTAATTCTGTTGAAAGCCATCCGTCATCTGCC 231 ************************************************************ consensus_5813#0 ATTGGTCTTGCACACTCAGAAATCTCAAGGCAGCAATACACAGATTTACCTGCTCAATGG 660 consensus_5813#1 ATTGGTCTTGCACACTNNNNNATCTNNNGGCNNNANNANNNAGATTTACCTGCTCANTGG 291 **************** **** *** * * *************** *** consensus_5813#0 ACCAAATACAACAAAACAGATCCTAAAACAGTTACAGTGAGTGTAGGACCAGCAATTAAG 720 consensus_5813#1 ACCANNTNCAACNNNNNAGATC-------------------------------------- 313 **** * **** ***** consensus_5813#0 GAAAACATTGGACATCAAGAAGACTGTGAAACATGGCGTATAAGGGGGAACCA 773 consensus_5813#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||