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Oryza sativa
cluster # 5813 cluster # 5813       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5813#0 length = 773 sequences # 2  
consensus_5813#1 length = 313 sequences # 1  

consensusID : consensus_5813#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 773
fasta sequence
                              [AGACCTAAAGCCTCAAATGCTTTACCTTTTGGCCTTGTAGTTCAGGATAGTGGTGCAAAGGTTTCTTCCACAAAGTTGTCTGATGAAAGACGAAGCGCCGGAGTACCAACATCAGAACTTGGCGATTTGGGGTTGGTTGATGAGCAATCCTTTACTGTACGTGACAACGATGCAGCGTCCAGAGAATATGGAGGGGTTAAGGGTGTGAGCATGAATAAAAGAGCAGTTCAACAAGAGAAGTTCTCAGCCCACCAGGTACCGCTACCACTCTTTATAAGCGATCAGAAAGCAGCTCCAGAAGTAAATTTGCATTTGAAGGAAGTCACTAACTTCAGACTAGAGGACTCTGATATCAGTAAAGGAAACTCTGGCACAAAGGAAGAAGATGTTAACTGCTTTAGCCCGCAAGCAACAGAGAGTAATCATGACAGAACAGTGTTTATTTCTGTGACAAACCTGGAAAATTCTAGTCGTTCTGATTTCATATTTGCGGCATCAACTGATCATAGTAAATTGCACTCACAAAGACGACCTAGCAAGAAAAAAATTGGAGGAATGAGTAATCATGCTAATTCTGTTGAAAGCCATCCGTCATCTGCCATTGGTCTTGCACACTCAGAAATCTCAAGGCAGCAATACACAGATTTACCTGCTCAATGGACCAAATACAACAAAACAGATCCTAAAACAGTTACAGTGAGTGTAGGACCAGCAATTAAGGAAAACATTGGACATCAAGAAGACTGTGAAACATGGCGTATAAGGGGGAACCA]

[+] EMBL CB630695             [AGACCTAAAGCCTCAAATGCTTTACCTTTTGGCCTTGTAGTTCAGGATAGTGGTGCAAAGGTTTCTTCCACAAAGTTGTCTGATGAAAGACGAAGCGCCGGAGTACCAACATCAGAACTTGGCGATTTGGGGTTGGTTGATGAGCAATCCTTTACTGTACGTGACAACGATGCAGCGTCCAGAGAATATGGAGGGGTTAAGGGTGTGAGCATGAATAAAAGAGCAGTTCAACAAGAGAAGTTCTCAGCCCACCAGGTACCGCTACCACTCTTTATAAGCGATCAGAAAGCAGCTCCAGAAGTAAATTTGCATTTGAAGGAAGTCACTAACTTCAGACTAGAGGACTCTGATATCAGTAAAGGAAACTCTGGCACAAAGGAAGAAGATGTTAACTGCTTTAGCCCGCAAGCAACAGAGAGTAATCATGACAGAACAGTGTTTATTTCTGTGACAAACCTGGAAAATTCTAGTCGTTCTGATTTCATATTTGCGGCATCAACTGATCATAGTAAATTGCACTCACAAAGACGACCTAGCAAGAAAAAAATTGGAGGAATGAGTAATCATGCTAATTCTGTTGAAAGCCATCCGTCATCTGCCATTGGTCTTGCACACTCAGAAATCTCAAGGCAGCAATACACAGATTTACCTGCTCAATGGACCAAATACAACAAAACAGATCCTAAAACAGTTACAGTGAGTGTAGGACCAGCAATTAAGGAAAACATTGGACATCAAGAAGACTGTGAAACATGGCGTATAAGGGGGAACCA]
[+] EMBL CF195700             [                                                                                                                                                                                                                                                                                                                                                                                 GGCACNAAGGAAGAAGATGTTAACTGCTTTAGCCCGCAAGCAACAGAGAGTAATCATGACAGAACAGTGTTTATTTCTGTGACAAACCTGGAAAATTCTAGTCGTTCTGATTTCATATTTGCGGCATCAACTGATCATAGTAAATTGCACTCACAAAGACGACCTNNNAAGAAAAAAATTGGAGGAATGAGTAATCATGCTAATTCTGTTGAAAGCCATCCGTCATCTGCCATTGGTCTTGCACACTCAGNAATCTCAAGGCAGCAATACACAGATTTACCTGCTCAATGGANNNNNNACAACANNNCAGATCCTnnnnnagt                                                                                 ]


>consensus_5813#0 AGACCTAAAGCCTCAAATGCTTTACCTTTTGGCCTTGTAGTTCAGGATAGTGGTGCAAAG GTTTCTTCCACAAAGTTGTCTGATGAAAGACGAAGCGCCGGAGTACCAACATCAGAACTT GGCGATTTGGGGTTGGTTGATGAGCAATCCTTTACTGTACGTGACAACGATGCAGCGTCC AGAGAATATGGAGGGGTTAAGGGTGTGAGCATGAATAAAAGAGCAGTTCAACAAGAGAAG TTCTCAGCCCACCAGGTACCGCTACCACTCTTTATAAGCGATCAGAAAGCAGCTCCAGAA GTAAATTTGCATTTGAAGGAAGTCACTAACTTCAGACTAGAGGACTCTGATATCAGTAAA GGAAACTCTGGCACAAAGGAAGAAGATGTTAACTGCTTTAGCCCGCAAGCAACAGAGAGT AATCATGACAGAACAGTGTTTATTTCTGTGACAAACCTGGAAAATTCTAGTCGTTCTGAT TTCATATTTGCGGCATCAACTGATCATAGTAAATTGCACTCACAAAGACGACCTAGCAAG AAAAAAATTGGAGGAATGAGTAATCATGCTAATTCTGTTGAAAGCCATCCGTCATCTGCC ATTGGTCTTGCACACTCAGAAATCTCAAGGCAGCAATACACAGATTTACCTGCTCAATGG ACCAAATACAACAAAACAGATCCTAAAACAGTTACAGTGAGTGTAGGACCAGCAATTAAG GAAAACATTGGACATCAAGAAGACTGTGAAACATGGCGTATAAGGGGGAACCA



consensusID : consensus_5813#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 313
fasta sequence
                              [GGCACAAAGGAAGAAGATGTTAACTGCTTTAGCCCGCAAGCAACAGAGAGTAATCATGACAGAACAGTGTTTATTTCTGTGACAAACCTGGAAAATTCTAGTCGTTCTGATTTCATATTTGCGGCATCAACTGATCATAGTAAATTGCACTCACAAAGACGACCTAGNAAGAAAAAAATTGGAGGAATGAGTAATCATGCTAATTCTGTTGAAAGCCATCCGTCATCTGCCATTGGTCTTGCACACTNNNNNATCTNNNGGCNNNANNANNNAGATTTACCTGCTCANTGGACCANNTNCAACNNNNNAGATC]

[+] EMBL CF195833             [GGCACAAAGGAAGAAGATGTTAACTGCTTTAGCCCGCAAGCAACAGAGAGTAATCATGACAGAACAGTGTTTATTTCTGTGACAAACCTGGAAAATTCTAGTCGTTCTGATTTCATATTTGCGGCATCAACTGATCATAGTAAATTGCACTCACAAAGACGACCTAGNAAGAAAAAAATTGGAGGAATGAGTAATCATGCTAATTCTGTTGAAAGCCATCCGTCATCTGCCATTGGTCTTGCACACTNNNNNATCTNNNGGCNNNANNANNNAGATTTACCTGCTCANTGGACCANNTNCAACNNNNNAGATC]


>consensus_5813#1 GGCACAAAGGAAGAAGATGTTAACTGCTTTAGCCCGCAAGCAACAGAGAGTAATCATGAC AGAACAGTGTTTATTTCTGTGACAAACCTGGAAAATTCTAGTCGTTCTGATTTCATATTT GCGGCATCAACTGATCATAGTAAATTGCACTCACAAAGACGACCTAGNAAGAAAAAAATT GGAGGAATGAGTAATCATGCTAATTCTGTTGAAAGCCATCCGTCATCTGCCATTGGTCTT GCACACTNNNNNATCTNNNGGCNNNANNANNNAGATTTACCTGCTCANTGGACCANNTNC AACNNNNNAGATC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5813#0      AGACCTAAAGCCTCAAATGCTTTACCTTTTGGCCTTGTAGTTCAGGATAGTGGTGCAAAG 60
consensus_5813#1      ------------------------------------------------------------
                                                                                  

consensus_5813#0      GTTTCTTCCACAAAGTTGTCTGATGAAAGACGAAGCGCCGGAGTACCAACATCAGAACTT 120
consensus_5813#1      ------------------------------------------------------------
                                                                                  

consensus_5813#0      GGCGATTTGGGGTTGGTTGATGAGCAATCCTTTACTGTACGTGACAACGATGCAGCGTCC 180
consensus_5813#1      ------------------------------------------------------------
                                                                                  

consensus_5813#0      AGAGAATATGGAGGGGTTAAGGGTGTGAGCATGAATAAAAGAGCAGTTCAACAAGAGAAG 240
consensus_5813#1      ------------------------------------------------------------
                                                                                  

consensus_5813#0      TTCTCAGCCCACCAGGTACCGCTACCACTCTTTATAAGCGATCAGAAAGCAGCTCCAGAA 300
consensus_5813#1      ------------------------------------------------------------
                                                                                  

consensus_5813#0      GTAAATTTGCATTTGAAGGAAGTCACTAACTTCAGACTAGAGGACTCTGATATCAGTAAA 360
consensus_5813#1      ------------------------------------------------------------
                                                                                  

consensus_5813#0      GGAAACTCTGGCACAAAGGAAGAAGATGTTAACTGCTTTAGCCCGCAAGCAACAGAGAGT 420
consensus_5813#1      ---------GGCACAAAGGAAGAAGATGTTAACTGCTTTAGCCCGCAAGCAACAGAGAGT 51
                               ***************************************************

consensus_5813#0      AATCATGACAGAACAGTGTTTATTTCTGTGACAAACCTGGAAAATTCTAGTCGTTCTGAT 480
consensus_5813#1      AATCATGACAGAACAGTGTTTATTTCTGTGACAAACCTGGAAAATTCTAGTCGTTCTGAT 111
                      ************************************************************

consensus_5813#0      TTCATATTTGCGGCATCAACTGATCATAGTAAATTGCACTCACAAAGACGACCTAGCAAG 540
consensus_5813#1      TTCATATTTGCGGCATCAACTGATCATAGTAAATTGCACTCACAAAGACGACCTAGNAAG 171
                      ******************************************************** ***

consensus_5813#0      AAAAAAATTGGAGGAATGAGTAATCATGCTAATTCTGTTGAAAGCCATCCGTCATCTGCC 600
consensus_5813#1      AAAAAAATTGGAGGAATGAGTAATCATGCTAATTCTGTTGAAAGCCATCCGTCATCTGCC 231
                      ************************************************************

consensus_5813#0      ATTGGTCTTGCACACTCAGAAATCTCAAGGCAGCAATACACAGATTTACCTGCTCAATGG 660
consensus_5813#1      ATTGGTCTTGCACACTNNNNNATCTNNNGGCNNNANNANNNAGATTTACCTGCTCANTGG 291
                      ****************     ****   ***   *  *   *************** ***

consensus_5813#0      ACCAAATACAACAAAACAGATCCTAAAACAGTTACAGTGAGTGTAGGACCAGCAATTAAG 720
consensus_5813#1      ACCANNTNCAACNNNNNAGATC-------------------------------------- 313
                      ****  * ****     *****                                      

consensus_5813#0      GAAAACATTGGACATCAAGAAGACTGTGAAACATGGCGTATAAGGGGGAACCA 773
consensus_5813#1      -----------------------------------------------------
                                                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)