These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_582#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [GCTCGCCTGCGAGGGGCAGCCGGCGACGGCGGAGAGCGGTGCAGCGCAACGAGGAGCAGCGGAGGACAACACTGGTGAGGTGGCGGCTGGCGGCAGGGAGAAGTCGGCGACGGGGCTCGAGATGGCGACAGGCAGGGGCGGCGTCGCGGTGGGCGGGCAGCGGCGGCTCGCTCGCGCCTGTCGCGGCGTTGGCCTCGGCGTCGTCCGCGCGGGGCCACGGCGCTAGCGCTGCGCAGGCAGAGGCTGTGGCGGCGTGGTGGTCGCAACGACAACGGTGCTGCGGCGGCGCTTACGTCGAGCCGGCTTGCGCTGTCCTAGCTGGATCTGGCCGTCCGCGGCTGGATCCGTCCCCTCCGCGTCGGATGGGCGGCGATGTGCGGATGTGGAGTTGGCGGGACGATGGCTTATGCTGGCGTGAAGCAGGAATTGGGCTTGACGTCCGCGGTGGCGACTTCCTCGTTGCCGACCGAGTCTTCTCCCTCATTTCGGTTTCCCTCCCTTCTTTGGCCGGACCTTGTTCTGGTCGTGGGGAACGCTAAGGGGAGGGCGGATGCTTCAGCTTGCTGTAAGAGTTGGTGGCCAAGGGTCCGTCTTTGCCGTTGGTTACGGTTGAGGTATGGGTGCTTGTGAGACGTCATGGACTATTCTGTGGCCGTCAATGTGGGGGTGCTTGTG] [+] EMBL CB679908 [GCTCGCCTGCGAGGGGCAGCCGGCGACGGCGGAGAGCGGTGCAGCGCAACGAGGAGCAGCGGAGGACAACACTGGTGAGGTGGCGGCTGGCGGCAGGGAGAAGTCGGCGACGGGGCTCGAGATGGCGACAGGCAGGGGCGGCGTCGCGGTGGGCGGGCAGCGGCGGCTCGCTCGCGCCTGTCGCGGCGTTGGCCTCGGCGTCGTCCGCGCGGGGCCACGGCGCTAGCGCTGCGCAGGCAGAGGCTGTGGCGGCGTGGTGGTCGCAACGACAACGGTGCTGCGGCGGCGCTTACGTCGAGCCGGCTTGCGCTGTCCTAGCTGGATCTGGCCGTCCGCGGCTGGATCCGTCCCCTCCGCGTCGGATGGGCGGCGATGTGCGGATGTGGAGTTGGCGGGACGATGGCTTATGCTGGCGTGAAGCAGGAATTGGGCTTGACGTCCGCGGTGGCGACTTCCTCGTTGCCGACCGAGTCTTCTCCCTCATTTCGGTTTCCCTCCCTTCTTTGGCCGGACCTTGTTCTGGTCGTGGGGAACGCTAAGGGGAGGGCGGATGCTTCAGCTTGCTGTAAGAGTTGGTGGCCAAGGGTCCGTCTTTGCCGTTGGTTACGGTTGAGGTATGGGTGCTTGTGAGACGTCATGGACTATTCTGTGGCCGTCAATGTGGGGGTGCTTGTG] consensusID : consensus_582#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [GCGGTGGCGACTTCCTCGTTGCCGGCCGAGTCTTCTCCCTCATTACGGTTTCCCTACCTTCTTTGGCCGGACCTTGTTCTGAGACGAGGGGAACACTACGGGGAGGGTAGGAACCTCCCACCCCGCTACACTGATTTGCTCGGCTACCGTCCCAATCTTCTCCTACTCCCCTCCCCCCTTTCTTCCTCCGCCCCCCCCATACCCCCATACCCCCCCCCCTCCTTTTTATCAGACCA] [+] EMBL CA756996 [GCGGTGGCGACTTCCTCGTTGCCGGCCGAGTCTTCTCCCTCATTACGGTTTCCCTACCTTCTTTGGCCGGACCTTGTTCTGAGACGAGGGGAACACTACGGGGAGGGTAGGAACCTCCCACCCCGCTACACTGATTTGCTCGGCTACCGTCCCAATCTTCTCCTACTCCCCTCCCCCCTTTCTTCCTCCGCCCCCCCCATACCCCCATACCCCCCCCCCTCCTTTTTATCAGACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_582#0 GCTCGCCTGCGAGGGGCAGCCGGCGACGGCGGAGAGCGGTGCAGCGCAACGAGGAGCAGC 60 consensus_582#1 ------------------------------------------------------------ consensus_582#0 GGAGGACAACACTGGTGAGGTGGCGGCTGGCGGCAGGGAGAAGTCGGCGACGGGGCTCGA 120 consensus_582#1 ------------------------------------------------------------ consensus_582#0 GATGGCGACAGGCAGGGGCGGCGTCGCGGTGGGCGGGCAGCGGCGGCTCGCTCGCGCCTG 180 consensus_582#1 ------------------------------------------------------------ consensus_582#0 TCGCGGCGTTGGCCTCGGCGTCGTCCGCGCGGGGCCACGGCGCTAGCGCTGCGCAGGCAG 240 consensus_582#1 ------------------------------------------------------------ consensus_582#0 AGGCTGTGGCGGCGTGGTGGTCGCAACGACAACGGTGCTGCGGCGGCGCTTACGTCGAGC 300 consensus_582#1 ------------------------------------------------------------ consensus_582#0 CGGCTTGCGCTGTCCTAGCTGGATCTGGCCGTCCGCGGCTGGATCCGTCCCCTCCGCGTC 360 consensus_582#1 ------------------------------------------------------------ consensus_582#0 GGATGGGCGGCGATGTGCGGATGTGGAGTTGGCGGGACGATGGCTTATGCTGGCGTGAAG 420 consensus_582#1 ------------------------------------------------------------ consensus_582#0 CAGGAATTGGGCTTGACGTCCGCGGTGGCGACTTCCTCGTTGCCGACCGAGTCTTCTCCC 480 consensus_582#1 ---------------------GCGGTGGCGACTTCCTCGTTGCCGGCCGAGTCTTCTCCC 39 ************************ ************** consensus_582#0 TCATTTCGGTTTCCCTCCCTTCTTTGGCCGGACCTTGTTCTG-GTCGTGGGGAACGCTAA 539 consensus_582#1 TCATTACGGTTTCCCTACCTTCTTTGGCCGGACCTTGTTCTGAGACGAGGGGAACACTAC 99 ***** ********** ************************* * ** ******* *** consensus_582#0 GGGGAGGGCGGATGCTTC--AGCTTGCTGTAA-GAGTTGGTGGCCAAGGGTCCGTCTTTG 596 consensus_582#1 GGGGAGGGTAGGAACCTCCCACCCCGCTACACTGATTTGCTCGGCTACCGTCCCAATCTT 159 ******** * * ** * * *** * ** *** * * * * **** * * consensus_582#0 CCGTTGGTTACGGTTGAGGTATGGGTGCTTGTGAGACGTCATGGACTATTCTGTGGCCGT 656 consensus_582#1 CTCCTACTCCCCTCCCCCCTTTCTTCCTCCGCCCCCCCCATACCCCCATACCCCCCCCCC 219 * * * * * * * * * ** * ** consensus_582#0 CAATGTGGGGGTGCTTGTG 675 consensus_582#1 TCCTTTTTATCAGACCA-- 236 * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||