cluster # 582

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Oryza sativa
cluster # 582 cluster # 582 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_582#0 length = 675 sequences # 1

consensus_582#1 length = 236 sequences # 1

consensusID : consensus_582#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 675
fasta sequence

                              [GCTCGCCTGCGAGGGGCAGCCGGCGACGGCGGAGAGCGGTGCAGCGCAACGAGGAGCAGCGGAGGACAACACTGGTGAGGTGGCGGCTGGCGGCAGGGAGAAGTCGGCGACGGGGCTCGAGATGGCGACAGGCAGGGGCGGCGTCGCGGTGGGCGGGCAGCGGCGGCTCGCTCGCGCCTGTCGCGGCGTTGGCCTCGGCGTCGTCCGCGCGGGGCCACGGCGCTAGCGCTGCGCAGGCAGAGGCTGTGGCGGCGTGGTGGTCGCAACGACAACGGTGCTGCGGCGGCGCTTACGTCGAGCCGGCTTGCGCTGTCCTAGCTGGATCTGGCCGTCCGCGGCTGGATCCGTCCCCTCCGCGTCGGATGGGCGGCGATGTGCGGATGTGGAGTTGGCGGGACGATGGCTTATGCTGGCGTGAAGCAGGAATTGGGCTTGACGTCCGCGGTGGCGACTTCCTCGTTGCCGACCGAGTCTTCTCCCTCATTTCGGTTTCCCTCCCTTCTTTGGCCGGACCTTGTTCTGGTCGTGGGGAACGCTAAGGGGAGGGCGGATGCTTCAGCTTGCTGTAAGAGTTGGTGGCCAAGGGTCCGTCTTTGCCGTTGGTTACGGTTGAGGTATGGGTGCTTGTGAGACGTCATGGACTATTCTGTGGCCGTCAATGTGGGGGTGCTTGTG]

[+] EMBL CB679908             [GCTCGCCTGCGAGGGGCAGCCGGCGACGGCGGAGAGCGGTGCAGCGCAACGAGGAGCAGCGGAGGACAACACTGGTGAGGTGGCGGCTGGCGGCAGGGAGAAGTCGGCGACGGGGCTCGAGATGGCGACAGGCAGGGGCGGCGTCGCGGTGGGCGGGCAGCGGCGGCTCGCTCGCGCCTGTCGCGGCGTTGGCCTCGGCGTCGTCCGCGCGGGGCCACGGCGCTAGCGCTGCGCAGGCAGAGGCTGTGGCGGCGTGGTGGTCGCAACGACAACGGTGCTGCGGCGGCGCTTACGTCGAGCCGGCTTGCGCTGTCCTAGCTGGATCTGGCCGTCCGCGGCTGGATCCGTCCCCTCCGCGTCGGATGGGCGGCGATGTGCGGATGTGGAGTTGGCGGGACGATGGCTTATGCTGGCGTGAAGCAGGAATTGGGCTTGACGTCCGCGGTGGCGACTTCCTCGTTGCCGACCGAGTCTTCTCCCTCATTTCGGTTTCCCTCCCTTCTTTGGCCGGACCTTGTTCTGGTCGTGGGGAACGCTAAGGGGAGGGCGGATGCTTCAGCTTGCTGTAAGAGTTGGTGGCCAAGGGTCCGTCTTTGCCGTTGGTTACGGTTGAGGTATGGGTGCTTGTGAGACGTCATGGACTATTCTGTGGCCGTCAATGTGGGGGTGCTTGTG]




>consensus_582#0
GCTCGCCTGCGAGGGGCAGCCGGCGACGGCGGAGAGCGGTGCAGCGCAACGAGGAGCAGC
GGAGGACAACACTGGTGAGGTGGCGGCTGGCGGCAGGGAGAAGTCGGCGACGGGGCTCGA
GATGGCGACAGGCAGGGGCGGCGTCGCGGTGGGCGGGCAGCGGCGGCTCGCTCGCGCCTG
TCGCGGCGTTGGCCTCGGCGTCGTCCGCGCGGGGCCACGGCGCTAGCGCTGCGCAGGCAG
AGGCTGTGGCGGCGTGGTGGTCGCAACGACAACGGTGCTGCGGCGGCGCTTACGTCGAGC
CGGCTTGCGCTGTCCTAGCTGGATCTGGCCGTCCGCGGCTGGATCCGTCCCCTCCGCGTC
GGATGGGCGGCGATGTGCGGATGTGGAGTTGGCGGGACGATGGCTTATGCTGGCGTGAAG
CAGGAATTGGGCTTGACGTCCGCGGTGGCGACTTCCTCGTTGCCGACCGAGTCTTCTCCC
TCATTTCGGTTTCCCTCCCTTCTTTGGCCGGACCTTGTTCTGGTCGTGGGGAACGCTAAG
GGGAGGGCGGATGCTTCAGCTTGCTGTAAGAGTTGGTGGCCAAGGGTCCGTCTTTGCCGT
TGGTTACGGTTGAGGTATGGGTGCTTGTGAGACGTCATGGACTATTCTGTGGCCGTCAAT
GTGGGGGTGCTTGTG

consensusID : consensus_582#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence

                              [GCGGTGGCGACTTCCTCGTTGCCGGCCGAGTCTTCTCCCTCATTACGGTTTCCCTACCTTCTTTGGCCGGACCTTGTTCTGAGACGAGGGGAACACTACGGGGAGGGTAGGAACCTCCCACCCCGCTACACTGATTTGCTCGGCTACCGTCCCAATCTTCTCCTACTCCCCTCCCCCCTTTCTTCCTCCGCCCCCCCCATACCCCCATACCCCCCCCCCTCCTTTTTATCAGACCA]

[+] EMBL CA756996             [GCGGTGGCGACTTCCTCGTTGCCGGCCGAGTCTTCTCCCTCATTACGGTTTCCCTACCTTCTTTGGCCGGACCTTGTTCTGAGACGAGGGGAACACTACGGGGAGGGTAGGAACCTCCCACCCCGCTACACTGATTTGCTCGGCTACCGTCCCAATCTTCTCCTACTCCCCTCCCCCCTTTCTTCCTCCGCCCCCCCCATACCCCCATACCCCCCCCCCTCCTTTTTATCAGACCA]




>consensus_582#1
GCGGTGGCGACTTCCTCGTTGCCGGCCGAGTCTTCTCCCTCATTACGGTTTCCCTACCTT
CTTTGGCCGGACCTTGTTCTGAGACGAGGGGAACACTACGGGGAGGGTAGGAACCTCCCA
CCCCGCTACACTGATTTGCTCGGCTACCGTCCCAATCTTCTCCTACTCCCCTCCCCCCTT
TCTTCCTCCGCCCCCCCCATACCCCCATACCCCCCCCCCTCCTTTTTATCAGACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_582#0      GCTCGCCTGCGAGGGGCAGCCGGCGACGGCGGAGAGCGGTGCAGCGCAACGAGGAGCAGC 60
consensus_582#1      ------------------------------------------------------------
                                                                                 

consensus_582#0      GGAGGACAACACTGGTGAGGTGGCGGCTGGCGGCAGGGAGAAGTCGGCGACGGGGCTCGA 120
consensus_582#1      ------------------------------------------------------------
                                                                                 

consensus_582#0      GATGGCGACAGGCAGGGGCGGCGTCGCGGTGGGCGGGCAGCGGCGGCTCGCTCGCGCCTG 180
consensus_582#1      ------------------------------------------------------------
                                                                                 

consensus_582#0      TCGCGGCGTTGGCCTCGGCGTCGTCCGCGCGGGGCCACGGCGCTAGCGCTGCGCAGGCAG 240
consensus_582#1      ------------------------------------------------------------
                                                                                 

consensus_582#0      AGGCTGTGGCGGCGTGGTGGTCGCAACGACAACGGTGCTGCGGCGGCGCTTACGTCGAGC 300
consensus_582#1      ------------------------------------------------------------
                                                                                 

consensus_582#0      CGGCTTGCGCTGTCCTAGCTGGATCTGGCCGTCCGCGGCTGGATCCGTCCCCTCCGCGTC 360
consensus_582#1      ------------------------------------------------------------
                                                                                 

consensus_582#0      GGATGGGCGGCGATGTGCGGATGTGGAGTTGGCGGGACGATGGCTTATGCTGGCGTGAAG 420
consensus_582#1      ------------------------------------------------------------
                                                                                 

consensus_582#0      CAGGAATTGGGCTTGACGTCCGCGGTGGCGACTTCCTCGTTGCCGACCGAGTCTTCTCCC 480
consensus_582#1      ---------------------GCGGTGGCGACTTCCTCGTTGCCGGCCGAGTCTTCTCCC 39
                                          ************************ **************

consensus_582#0      TCATTTCGGTTTCCCTCCCTTCTTTGGCCGGACCTTGTTCTG-GTCGTGGGGAACGCTAA 539
consensus_582#1      TCATTACGGTTTCCCTACCTTCTTTGGCCGGACCTTGTTCTGAGACGAGGGGAACACTAC 99
                     ***** ********** ************************* * ** ******* *** 

consensus_582#0      GGGGAGGGCGGATGCTTC--AGCTTGCTGTAA-GAGTTGGTGGCCAAGGGTCCGTCTTTG 596
consensus_582#1      GGGGAGGGTAGGAACCTCCCACCCCGCTACACTGATTTGCTCGGCTACCGTCCCAATCTT 159
                     ********  *   * **  * *  ***  *  ** *** * * * *  ****   * * 

consensus_582#0      CCGTTGGTTACGGTTGAGGTATGGGTGCTTGTGAGACGTCATGGACTATTCTGTGGCCGT 656
consensus_582#1      CTCCTACTCCCCTCCCCCCTTTCTTCCTCCGCCCCCCCCATACCCCCATACCCCCCCCCC 219
                     *   *  *  *        * *        *     *        * ** *     **  

consensus_582#0      CAATGTGGGGGTGCTTGTG 675
consensus_582#1      TCCTTTTTATCAGACCA-- 236
                        * *      *