These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5827#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 537 fasta sequence [CCTCTCAAACACTGTCTCCATTGACGGCTGCTCCTTTGGGTACACATGCACCTTTGAATACGAACATGACAACTTCCCCACTTTAAAGCCTGGTATATTTTTTCGGGAGCAAGAATTGAAAGAGGGGAATGTGGTCAGAATGCCAGATATAACGAATGAGTCGACGACGGCTCGTTCGTTCCTGCCCCGATCGATCGCCGATAGGATCCCATTTGAGGCTGAGGCTGTCAAGCCCCTTTTCGGGCTAGAACCAAACACAACCTTGGCAAAGGCTGTGGATGAAACGGTGGCGCAATGCCAGAGCTCGCCAAGCAAGGGTGAGACGAAGCGGTGCGTCACATCNNCAGAGGATATGATCGACTTTGCCGTGGCGATGTTAGGTGATGACATTGTGGTTCGCAGTACGGTATTGCCAAATGGGTCCGGCGAGTCAATCATGATTGGTNNNNTCAAGGGAATAAATAGTGGCAAGATTACCAGCTCGGTATCATGCCACGAATACTTATTTCCATANNTNGTATACTCCTGCCACTCGNT] [+] EMBL CF195804 [CCTCTCAAACACTGTCTCCATTGACGGCTGCTCCTTTGGGTACACATGCACCTTTGAATACGAACATGACAACTTCCCCACTTTAAAGCCTGGTATATTTTTTCGGGAGCAAGAATTGAAAGAGGGGAATGTGGTCAGAATGCCAGATATAACGAATGAGTCGACGACGGCTCGTTCGTTCCTGCCCCGATCGATCGCCGATAGGATCCCATTTGAGGCTGAGGCTGTCAAGCCCCTTTTCGGGCTAGAACCAAACACAACCTTGGCAAAGGCTGTGGATGAAACGGTGGCGCAATGCCAGAGCTCGCCAAGCAAGGGTGAGACGAAGCGGTGCGTCACATCNNCAGAGGATATGATCGACTTTGCCGTGGCGATGTTAGGTGATGACATTGTGGTTCGCAGTACGGTATTGCCAAATGGGTCCGGCGAGTCAATCATGATTGGTNNNNTCAAGGGAATAAATAGTGGCAAGATTACCAGCTCGGTATCATGCCACGAATACTTATTTCCATANNTNGTATACTCCTGCCACTCGNT] [+] EMBL CF195822 [CCTCTCAAACACTGTCTCCATTGACGGCTGCTCCTTTGGGTACACATGCACCTTTGAATACGAACATGACAACTTCCCCACTTTAAAGCCTGGTATATTTTTTCGGGAGCAAGAATTGAAAGAGGGGAATGTGGTCAGAATGCCAGATATAACGAATGAGTCGACGACGGCTCGTTCGTTCCTGCCCCGATCGATCGCCGATAGGATCCCATTTGAGGCTGAGGCTGTCAAGCCCCTTTTCGGGCTAGAACCAAACACAACCTTGGCAAAGGCTGTGGATGAAACGGTGGCGCAATGCCAGAGCTCGCCAAGCAAGGGTGAGACGAAGCGGTGCGTCACATCNNNAGANNATATGATCGACTTTGCCGTNGCGATGTTAGGTGATGACATTGTGGNNNNNAGTACNNNNTNGCCAAATGGGn ] consensusID : consensus_5827#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence [CCTCTCAAACACTGTCTCCATTGACGGCTGCTCCTTTGGGTACACATGCACCTTTGAATACGAACATGACAACTTCCCCACTTTAAAGCCTGGTATATTTTTTCGGGAGCAAGAATTGAAAGAGGGGAATGTGGTCAGAATGCCAGATATAACGAATGAGTCGACGACGGCTCGTTCGTTCCTGCCCCGATCGATCGCCGATAGGATCCCATTTGAGGCTGAGGCTGTCAAGCCCCTTTTCGGGCTAGAACCAAACACAACCTTGGCAAAGGCTGTGGATGAAACGGTGGCGCAATGCCAGAGCTCGCCAAGCAAGGGTGAGACGAAGCGGTGCGTCACATCAGCNNNNNATATGATCGACTTTGCCGTGGCGATGNNNNNTGATGACATTGTGNNNNNNNNNNCNGTATTGCCAAATGGGTCCNNCGNNNCAATCATGA] [+] EMBL CF195683 [CCTCTCAAACACTGTCTCCATTGACGGCTGCTCCTTTGGGTACACATGCACCTTTGAATACGAACATGACAACTTCCCCACTTTAAAGCCTGGTATATTTTTTCGGGAGCAAGAATTGAAAGAGGGGAATGTGGTCAGAATGCCAGATATAACGAATGAGTCGACGACGGCTCGTTCGTTCCTGCCCCGATCGATCGCCGATAGGATCCCATTTGAGGCTGAGGCTGTCAAGCCCCTTTTCGGGCTAGAACCAAACACAACCTTGGCAAAGGCTGTGGATGAAACGGTGGCGCAATGCCAGAGCTCGCCAAGCAAGGGTGAGACGAAGCGGTGCGTCACATCAGCNNNNNATATGATCGACTTTGCCGTGGCGATGNNNNNTGATGACATTGTGNNNNNNNNNNCNGTATTGCCAAATGGGTCCNNCGNNNCAATCATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5827#0 CCTCTCAAACACTGTCTCCATTGACGGCTGCTCCTTTGGGTACACATGCACCTTTGAATA 60 consensus_5827#1 CCTCTCAAACACTGTCTCCATTGACGGCTGCTCCTTTGGGTACACATGCACCTTTGAATA 60 ************************************************************ consensus_5827#0 CGAACATGACAACTTCCCCACTTTAAAGCCTGGTATATTTTTTCGGGAGCAAGAATTGAA 120 consensus_5827#1 CGAACATGACAACTTCCCCACTTTAAAGCCTGGTATATTTTTTCGGGAGCAAGAATTGAA 120 ************************************************************ consensus_5827#0 AGAGGGGAATGTGGTCAGAATGCCAGATATAACGAATGAGTCGACGACGGCTCGTTCGTT 180 consensus_5827#1 AGAGGGGAATGTGGTCAGAATGCCAGATATAACGAATGAGTCGACGACGGCTCGTTCGTT 180 ************************************************************ consensus_5827#0 CCTGCCCCGATCGATCGCCGATAGGATCCCATTTGAGGCTGAGGCTGTCAAGCCCCTTTT 240 consensus_5827#1 CCTGCCCCGATCGATCGCCGATAGGATCCCATTTGAGGCTGAGGCTGTCAAGCCCCTTTT 240 ************************************************************ consensus_5827#0 CGGGCTAGAACCAAACACAACCTTGGCAAAGGCTGTGGATGAAACGGTGGCGCAATGCCA 300 consensus_5827#1 CGGGCTAGAACCAAACACAACCTTGGCAAAGGCTGTGGATGAAACGGTGGCGCAATGCCA 300 ************************************************************ consensus_5827#0 GAGCTCGCCAAGCAAGGGTGAGACGAAGCGGTGCGTCACATCNNCAGAGGATATGATCGA 360 consensus_5827#1 GAGCTCGCCAAGCAAGGGTGAGACGAAGCGGTGCGTCACATCAGCNNNNNATATGATCGA 360 ****************************************** * ********** consensus_5827#0 CTTTGCCGTGGCGATGTTAGGTGATGACATTGTGGTTCGCAGTACGGTATTGCCAAATGG 420 consensus_5827#1 CTTTGCCGTGGCGATGNNNNNTGATGACATTGTGNNNNNNNNNNCNGTATTGCCAAATGG 420 **************** ************* * ************** consensus_5827#0 GTCCGGCGAGTCAATCATGATTGGTNNNNTCAAGGGAATAAATAGTGGCAAGATTACCAG 480 consensus_5827#1 GTCCNNCGNNNCAATCATGA---------------------------------------- 440 **** ** ********* consensus_5827#0 CTCGGTATCATGCCACGAATACTTATTTCCATANNTNGTATACTCCTGCCACTCGNT 537 consensus_5827#1 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||