cluster # 5835

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Oryza sativa
cluster # 5835 cluster # 5835 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5835#0 length = 433 sequences # 2

consensus_5835#1 length = 431 sequences # 1

consensusID : consensus_5835#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 433
fasta sequence

                              [TAAATCCACCTGAGAAAATATGTCTGTGGAATCAATAATGTCGTGATGCAAAAATGCGCATGCAGTCATTTGTACTGTTCACGTTGACGGCCGCGCTCCCGTCGCTACTCCCGCCGCCGTGCCAGCGTGGCGCCGGCGGCGGGGGCGCCACCGCGACGTCGTGCGAACCGCCGAACGCCGCGCAATCCGCCGTCCTCTACGCGGCGCTGTGCCTCCTGGCCGCGGGCAACGGCGGCACGCGGTACAACATGGCGGCGCTGGGCGCCGACCAGTTCGCCGGCGAGGGGCAGCCGCGGCGGCGGCGGCAGGGCGGCGGGTTCTTCAG-TTGCTACTTCGCGTTCCTGTACGCCTCCTACGCGACCGG-CGACACGGTCCTCGTCTACGTGCAGGACGGCGTCA-GCTGGGCCCTCGGC-TTCGGCGTCTGCGTCGCCAC]

[+] EMBL AU181593             [TAAATCCACCTGAGAAAATATGTCTGTGGAATCAATAATGTCGTGATGCAAAAATGCGCATGCAGTCATTTGTACTGTTCACGTTGACGGCCGCGCTCCCGTCGCTACTCCCGCCGCCGTGCCAGCGTGGCGCCGGCGGCGGGGGCGCCACCGCGACGTCGTGCGAACCGCCGAACGCCGCGCAATCCGCCGTCCTCTACGCGGCGCTGTGCCTCCTGGCCGCGGGCAACGGCGGCACGCGGTACAACATGGCGGCGCTGGGCGCCGACCAGTTCGCCGGCGAGGGGCAGCCGCGGCGGCGGCGGCAGGGCGGCGGGTTCTTCAG TTGCTACTTCGCGTTCCTGTACGCCTCCTACGCGACCGG CGACACGGTCCTCGTCTACGTGCAGGACGGCGTCA GCTGGGCCCTCGGC TTCGGCGTCTGCGTCGCCAC]
[+] EMBL AU184880             [                                                                GTCATTTGTACTGTTCACGTTGACGGCCGCGCTCCCGTCGCTACTCCCGCCGCCGTGCCAGCGTGGCGCCGGCGGCGGGGGCGCCACCGCGACGTCGTGCGAACCGCCGAACGCCGCGCAATCCGCCGTCCTCTACGCGGCGCTGTGCCTCCTGGCCGCGGGCAACGGCGGCACGCGGTACAACATGGCGGCGCTGGGCGCCGACCAGTTCGCCGGCAAGGGGCAGCCGCGGNGGCGGCGGCAGGGCGGCGGGTTCTTAAGTTTGCTACTTCGCGNTCCTGTACGCCTCCTACGCGACCGGACGACACGGTCCTCGTCTACGTGCAGGACGGCGTCANGCTGGGCCCTCGGCTTTCGGC              ]




>consensus_5835#0
TAAATCCACCTGAGAAAATATGTCTGTGGAATCAATAATGTCGTGATGCAAAAATGCGCA
TGCAGTCATTTGTACTGTTCACGTTGACGGCCGCGCTCCCGTCGCTACTCCCGCCGCCGT
GCCAGCGTGGCGCCGGCGGCGGGGGCGCCACCGCGACGTCGTGCGAACCGCCGAACGCCG
CGCAATCCGCCGTCCTCTACGCGGCGCTGTGCCTCCTGGCCGCGGGCAACGGCGGCACGC
GGTACAACATGGCGGCGCTGGGCGCCGACCAGTTCGCCGGCGAGGGGCAGCCGCGGCGGC
GGCGGCAGGGCGGCGGGTTCTTCAGTTGCTACTTCGCGTTCCTGTACGCCTCCTACGCGA
CCGGCGACACGGTCCTCGTCTACGTGCAGGACGGCGTCAGCTGGGCCCTCGGCTTCGGCG
TCTGCGTCGCCAC

consensusID : consensus_5835#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 431
fasta sequence

                              [GGGCGGACGCGTGGGGGGTTGGGGATGGCGATGAGCGCGACGAGCAGCAACCTCATCGTGTACCTGGTGCACAAGTACAACGTGAAGGCCATCCACGCCGCCCAGATCTCCAACGTCGTCCGCGGCTGCATGCAGCTCGCCCCCGTCCTCGCCGCCGCCCTCTCCGACGCCTTCTTCGGCCCCTATCCCATCGCCGTCGCCGGCCTCGTCTTCTCCCTCCTTTCATTTGTACTGTTCACGTTGACGGCCGCGCTCCCGTCGCTACTCCCGCCGCCGTGCCAGCGTGGCGCCGGCGGCGGGGGCGCCACCGCGACGTCGTGCGAACCGCCGAACGCCGCGCAATCCGCCGTCCTNTACGCGGAGCTGTGCCTCCTGGCCGCGGGCAACGGCGGCACGCGGTACAACATGGCGGNGCTGGGCGCCGACCAGTT]

[+] EMBL AU181300             [GGGCGGACGCGTGGGGGGTTGGGGATGGCGATGAGCGCGACGAGCAGCAACCTCATCGTGTACCTGGTGCACAAGTACAACGTGAAGGCCATCCACGCCGCCCAGATCTCCAACGTCGTCCGCGGCTGCATGCAGCTCGCCCCCGTCCTCGCCGCCGCCCTCTCCGACGCCTTCTTCGGCCCCTATCCCATCGCCGTCGCCGGCCTCGTCTTCTCCCTCCTTTCATTTGTACTGTTCACGTTGACGGCCGCGCTCCCGTCGCTACTCCCGCCGCCGTGCCAGCGTGGCGCCGGCGGCGGGGGCGCCACCGCGACGTCGTGCGAACCGCCGAACGCCGCGCAATCCGCCGTCCTNTACGCGGAGCTGTGCCTCCTGGCCGCGGGCAACGGCGGCACGCGGTACAACATGGCGGNGCTGGGCGCCGACCAGTT]




>consensus_5835#1
GGGCGGACGCGTGGGGGGTTGGGGATGGCGATGAGCGCGACGAGCAGCAACCTCATCGTG
TACCTGGTGCACAAGTACAACGTGAAGGCCATCCACGCCGCCCAGATCTCCAACGTCGTC
CGCGGCTGCATGCAGCTCGCCCCCGTCCTCGCCGCCGCCCTCTCCGACGCCTTCTTCGGC
CCCTATCCCATCGCCGTCGCCGGCCTCGTCTTCTCCCTCCTTTCATTTGTACTGTTCACG
TTGACGGCCGCGCTCCCGTCGCTACTCCCGCCGCCGTGCCAGCGTGGCGCCGGCGGCGGG
GGCGCCACCGCGACGTCGTGCGAACCGCCGAACGCCGCGCAATCCGCCGTCCTNTACGCG
GAGCTGTGCCTCCTGGCCGCGGGCAACGGCGGCACGCGGTACAACATGGCGGNGCTGGGC
GCCGACCAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5835#0      ------------------------------------------------------------
consensus_5835#1      GGGCGGACGCGTGGGGGGTTGGGGATGGCGATGAGCGCGACGAGCAGCAACCTCATCGTG 60
                                                                                  

consensus_5835#0      ------------------------------------------------------------
consensus_5835#1      TACCTGGTGCACAAGTACAACGTGAAGGCCATCCACGCCGCCCAGATCTCCAACGTCGTC 120
                                                                                  

consensus_5835#0      ----------------------------------TAAATCCACCTGAGAAAATAT--GTC 24
consensus_5835#1      CGCGGCTGCATGCAGCTCGCCCCCGTCCTCGCCGCCGCCCTCTCCGACGCCTTCTTCGGC 180
                                                             *   * **     * *  * *

consensus_5835#0      TGTGGAATCAATAATGTCGT-GATGCAAAAATGCGCATGCAGTCATTTGTACTGTTCACG 83
consensus_5835#1      CCCTATCCCATCGCCGTCGCCGGCCTCGTCTTCTCCCTCCTTTCATTTGTACTGTTCACG 240
                              **     ****  *         *   * * *  ******************

consensus_5835#0      TTGACGGCCGCGCTCCCGTCGCTACTCCCGCCGCCGTGCCAGCGTGGCGCCGGCGGCGGG 143
consensus_5835#1      TTGACGGCCGCGCTCCCGTCGCTACTCCCGCCGCCGTGCCAGCGTGGCGCCGGCGGCGGG 300
                      ************************************************************

consensus_5835#0      GGCGCCACCGCGACGTCGTGCGAACCGCCGAACGCCGCGCAATCCGCCGTCCTCTACGCG 203
consensus_5835#1      GGCGCCACCGCGACGTCGTGCGAACCGCCGAACGCCGCGCAATCCGCCGTCCTNTACGCG 360
                      ***************************************************** ******

consensus_5835#0      GCGCTGTGCCTCCTGGCCGCGGGCAACGGCGGCACGCGGTACAACATGGCGGCGCTGGGC 263
consensus_5835#1      GAGCTGTGCCTCCTGGCCGCGGGCAACGGCGGCACGCGGTACAACATGGCGGNGCTGGGC 420
                      * ************************************************** *******

consensus_5835#0      GCCGACCAGTTCGCCGGCGAGGGGCAGCCGCGGCGGCGGCGGCAGGGCGGCGGGTTCTTC 323
consensus_5835#1      GCCGACCAGTT------------------------------------------------- 431
                      ***********                                                 

consensus_5835#0      AGTTGCTACTTCGCGTTCCTGTACGCCTCCTACGCGACCGGCGACACGGTCCTCGTCTAC 383
consensus_5835#1      ------------------------------------------------------------
                                                                                  

consensus_5835#0      GTGCAGGACGGCGTCAGCTGGGCCCTCGGCTTCGGCGTCTGCGTCGCCAC 433
consensus_5835#1      --------------------------------------------------