Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5862 cluster # 5862       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5862#0 length = 3603 sequences # 2  
 consensus_5862#1 length = 557 sequences # 1  
consensusID : consensus_5862#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 3603
fasta sequence 
                              [CACATTTGGAGGGAAAGAGCACCCATGGTTTTGCAATTTTTTTCTTTGCCCTAGTTGCATCCAAGTCCAAAGTCCAAGCAGAGAGAGAGAGAGACGCTGCCTCAGTCGTCTCGTCTCGTCACGACAGCACAGTACACAAGCCTCCTCCTCCTCTTCAGCAGCTGCTTCACACTCACACTGCCTCCTCTCTCTCTCTCTCTCTCTCTCTCCATCTTGCTGCTAAATCCATCCGCACCTAATCCGGCGTGCGGTGCGGGAGCAAGCAAGGAATCCACCCCCCCGTGGCGACAAGAGAATCGGATCGAGGGCGTGCAGGCGCAGCTGGCGAGCGAGCGAGCAGGGGAGGAGGGGAAGGAAAGCTCTTGGTACACCCAACCGTAGAGGCGGAGAGGGCATCGGCTCAGACGGTGGCTGCAGTGCAGGCCTCAGCTGGGGTCCTCGGCTCGGATCTGGGGAGGACGCGCCGCGGCGGAGGCGATGCAGGGTTTGCTTGTAGTGAAATTCTGCACCCAATGAATTATACATACAATATATAAGATGGCAGCAGAGGTCACTCAGAATTATTTTGCATGGTCACAGGAGGAATCACCTGTGCAAGACAGCTCTCAGGGAACACCACAAGTGTTCGACCATGGTTCCATATCTTTTGGAAGATTTGAGTTGGAATCACTAGCATGGGAGAAGTGGTCTGTATTTGCCAATGATAGGCGCCATGAAGAGTTTGGCAAGTTCAATGGTTTGGTTGCTAAGAAGAAGGCATACTTCGAAGAATACTTCAAGAGAATTAGGGAGTTAAAGGCTTTACAACAACAAAACCAGCAAACTGAACTTAATCTTGACTATAGTGGTGATGGTAGTGATTCTAGTCAGACAGGAGAGGATGTGCCAACTGCAGATCAGGCATCTCCTTCTGGATCTGGAACCCTTCTTGATTCCATGGTACAAACAGGTGTTCAGACTATATTTGAGAATGATTTGGAATGCTATGATGATAATGACAAAGAGATGTTAGATAAGGATATTTCTCCATCAGTTGGAGGCACATGTCAAATTGAGCAAGAATTCAGAGAAAGTGCAAGCGGTGGTAATCATCCTGACAGAATGGTGGATGTGTTGCAGCAAAACACCAACTGTGGTCCAGATGATCTGGGAAGGCCCATGGAGTCTATGATGACTCCGAAGAGAACTGTCAAGAAAGATTCACTGGTTGGTCAAGCTGCAAAAACAATGCCAAAGACTGTCAATATGACTTCTAGTAATATTCCGGGTCATGCAGTTGTTAATAAGGGAACTGATTCAGGCAAATCCAGTGTGGTGAATCGTAGAGCCAAGCCAGAAACTATTCAGCAAAGGCTAAAAGCAGTAACTGGCAATATTGTTGACATCGTTGGAAGAAGCAAACTTGTGGTAAAAGAAGTCCCTGGTATAATGGGTGTTAGAAGACCTTCCTCTCCAGCACTACAACGCCCCTCCACCAGGGAACGACGACCTGTCACCAGAGATAGTTCACGGAAGGCTCCTGAAGTTGCCACCATGTGCCGGCCTTCTACTGCTGAAAGGCGCCCTGCCACCCGGGAGTTGGCACCAAAGCAAGCCAACACAGTTGTTCCGTGTCGACCATCTACACCAAACAGGCGCCCTATGACCAGAGAGTTGGCGCCAGTGCATTCAAGCATTGCTACCCCACGTCGACCTTCTACTGCTGAAAGGCGCCCAATCACCAGAGGGATGGCACCAATGCATCCTAGCATTGCTACCCCAGTTCGACCTTCCACTGCTGAGAGGCGCCCTACCTCAAAACAGATGGCTCAAAAGCATGTTGGTATGGCCACCCCATCTCGGCCATCCACTGCTGAAAGGCGACCTATCACCAGAGAGGCTGCACGGAAAAACGCTGATGTTGCCATCTTGCATCGACCTTCTACTGCCGAGAGACGCCCTATCACCAGAGAGACTCCACAGAAGCATGCTAACGTTGTCGCACTGCATCGGCCTTCTACTGCGGAGAGACGACCTGTTGTTAGAGAGATTGCTCCAAAGCATGCTGATGTCACTCTCACTCCTGCACGCCGGCCATCTACCTCTGAAAGACGCCCTGTCACCAGAGAGACTGCACTGAGGCACAGTAATTTCACCGGTTCATGTTGGCCTTTGACTCCTCAAAGGCACATCAGCAGGGGAAGTGCACAAATACATGCTGACGTTAGCACCACCCCGCGTCATCCATCTACTGGAGAAAGGCGCCCTATCACCAAAGAGAGTAACATAAAATTGGATGAAAAAACACCTATCAAGTTGAGAGGCATGCTGGCTAACCCAAAGGGTGCTATGGCTACAGTAGTCACTCCCCAGAAGGCAATTACTCGAAAGCTTGTTAAGAGTAGCAAGCCAGAAATGAAAAGTTGTGCTAAAGAGAGGACAGAACTTCAAGCAGTTGGGAAACACAAAGCAAGTTCTGTTAACCTTCCTCCAAGGGAAATGTTTACTTCAAATGTTAGAGCCAATCGAGTCCCAGAAAGCTTCAGAAAGCCAAACAAGGTGACATGCCCGAGCTTATTTTTTGTTCCATGCTGTTTGTCTAAATTGCATTCATTAAGTACTGTAGTGACATATGCAGTGCTGGCGCCTTTGGCCATTTTTATTGCTGTCTGGCGCCTTTTACAACTAGATTAATTACATTTGCATTATGCATTTTCTTTGCATCCTGGATGCTTCCCTGTTGGACACACTATATTGATAAATCTAGTTCAAGTTACTACCTGCTGCCACAGGGGAAATCCGCAAGTAAATTTTAGCGATACAATATGGAAATTGTAAAGAGTGGCTTATATTTAAAGGTGTTCCACACCTTATTCTGGGAGGACTTTGCATAGTCTTGTTCCAGCCTACACTGGAATCTTGCACTGCACTTCACGTTAGTGTTGTAGCATATGGCTATAAGCTAACCCATACCTCTGAATTCTAAAGATTATCTTATGGGAGACAAACTGCAAATGAACATGAGATAATGAAATTTTCTACTGCATTACACGCTTTTGATTTGCTGATAATGATGATTATCATTTTTTCAGGGCATTCAGGAGACAGCGAGATCTCAAATATCCTCATCAAAGAGTGCAACTCCTGCACAGACTAGAAGTATAAAGACAAGGGCTCCCAACCCACCTCCGC-CTCCTCCCCCACCGCGGCGAC-CTTCTCAGATATCCAGCAAGACAAACACAAATAACTTGTCTGTTGGTGGAAGGAAGCCCAAGGCTTCTACTCCACACTGGCACTAA-CCCAATCGAAAGT-CTCC-AATCTAGGA-TCCTGCAGAACAAGA-TAG-CTGTGAAAAAATGTGAAGAAAAAATGAGGCATTCGACGCATCTAAAAGC-ATTAACCGTGCTGTTCCTCGTTATCTTCTGTCATTAGTCGTTACTAGTACCACTTACCATCACT-TTTTGTCACCTATTAGAAGTAACCGATGTAGTGTTCGTATCTACCAATCTGTAATATGT-CCAGTTCTCCACTAATCCCGTAGTTCTACCGTCCAAGAATTTACCTAGAACATTGTATATACCTGAAATAAATGGAGCTTTTGGCTGATGAACCTTGACCAAAAAACAA]

[+] EMBL AK070104             [CACATTTGGAGGGAAAGAGCACCCATGGTTTTGCAATTTTTTTCTTTGCCCTAGTTGCATCCAAGTCCAAAGTCCAAGCAGAGAGAGAGAGAGACGCTGCCTCAGTCGTCTCGTCTCGTCACGACAGCACAGTACACAAGCCTCCTCCTCCTCTTCAGCAGCTGCTTCACACTCACACTGCCTCCTCTCTCTCTCTCTCTCTCTCTCTCCATCTTGCTGCTAAATCCATCCGCACCTAATCCGGCGTGCGGTGCGGGAGCAAGCAAGGAATCCACCCCCCCGTGGCGACAAGAGAATCGGATCGAGGGCGTGCAGGCGCAGCTGGCGAGCGAGCGAGCAGGGGAGGAGGGGAAGGAAAGCTCTTGGTACACCCAACCGTAGAGGCGGAGAGGGCATCGGCTCAGACGGTGGCTGCAGTGCAGGCCTCAGCTGGGGTCCTCGGCTCGGATCTGGGGAGGACGCGCCGCGGCGGAGGCGATGCAGGGTTTGCTTGTAGTGAAATTCTGCACCCAATGAATTATACATACAATATATAAGATGGCAGCAGAGGTCACTCAGAATTATTTTGCATGGTCACAGGAGGAATCACCTGTGCAAGACAGCTCTCAGGGAACACCACAAGTGTTCGACCATGGTTCCATATCTTTTGGAAGATTTGAGTTGGAATCACTAGCATGGGAGAAGTGGTCTGTATTTGCCAATGATAGGCGCCATGAAGAGTTTGGCAAGTTCAATGGTTTGGTTGCTAAGAAGAAGGCATACTTCGAAGAATACTTCAAGAGAATTAGGGAGTTAAAGGCTTTACAACAACAAAACCAGCAAACTGAACTTAATCTTGACTATAGTGGTGATGGTAGTGATTCTAGTCAGACAGGAGAGGATGTGCCAACTGCAGATCAGGCATCTCCTTCTGGATCTGGAACCCTTCTTGATTCCATGGTACAAACAGGTGTTCAGACTATATTTGAGAATGATTTGGAATGCTATGATGATAATGACAAAGAGATGTTAGATAAGGATATTTCTCCATCAGTTGGAGGCACATGTCAAATTGAGCAAGAATTCAGAGAAAGTGCAAGCGGTGGTAATCATCCTGACAGAATGGTGGATGTGTTGCAGCAAAACACCAACTGTGGTCCAGATGATCTGGGAAGGCCCATGGAGTCTATGATGACTCCGAAGAGAACTGTCAAGAAAGATTCACTGGTTGGTCAAGCTGCAAAAACAATGCCAAAGACTGTCAATATGACTTCTAGTAATATTCCGGGTCATGCAGTTGTTAATAAGGGAACTGATTCAGGCAAATCCAGTGTGGTGAATCGTAGAGCCAAGCCAGAAACTATTCAGCAAAGGCTAAAAGCAGTAACTGGCAATATTGTTGACATCGTTGGAAGAAGCAAACTTGTGGTAAAAGAAGTCCCTGGTATAATGGGTGTTAGAAGACCTTCCTCTCCAGCACTACAACGCCCCTCCACCAGGGAACGACGACCTGTCACCAGAGATAGTTCACGGAAGGCTCCTGAAGTTGCCACCATGTGCCGGCCTTCTACTGCTGAAAGGCGCCCTGCCACCCGGGAGTTGGCACCAAAGCAAGCCAACACAGTTGTTCCGTGTCGACCATCTACACCAAACAGGCGCCCTATGACCAGAGAGTTGGCGCCAGTGCATTCAAGCATTGCTACCCCACGTCGACCTTCTACTGCTGAAAGGCGCCCAATCACCAGAGGGATGGCACCAATGCATCCTAGCATTGCTACCCCAGTTCGACCTTCCACTGCTGAGAGGCGCCCTACCTCAAAACAGATGGCTCAAAAGCATGTTGGTATGGCCACCCCATCTCGGCCATCCACTGCTGAAAGGCGACCTATCACCAGAGAGGCTGCACGGAAAAACGCTGATGTTGCCATCTTGCATCGACCTTCTACTGCCGAGAGACGCCCTATCACCAGAGAGACTCCACAGAAGCATGCTAACGTTGTCGCACTGCATCGGCCTTCTACTGCGGAGAGACGACCTGTTGTTAGAGAGATTGCTCCAAAGCATGCTGATGTCACTCTCACTCCTGCACGCCGGCCATCTACCTCTGAAAGACGCCCTGTCACCAGAGAGACTGCACTGAGGCACAGTAATTTCACCGGTTCATGTTGGCCTTTGACTCCTCAAAGGCACATCAGCAGGGGAAGTGCACAAATACATGCTGACGTTAGCACCACCCCGCGTCATCCATCTACTGGAGAAAGGCGCCCTATCACCAAAGAGAGTAACATAAAATTGGATGAAAAAACACCTATCAAGTTGAGAGGCATGCTGGCTAACCCAAAGGGTGCTATGGCTACAGTAGTCACTCCCCAGAAGGCAATTACTCGAAAGCTTGTTAAGAGTAGCAAGCCAGAAATGAAAAGTTGTGCTAAAGAGAGGACAGAACTTCAAGCAGTTGGGAAACACAAAGCAAGTTCTGTTAACCTTCCTCCAAGGGAAATGTTTACTTCAAATGTTAGAGCCAATCGAGTCCCAGAAAGCTTCAGAAAGCCAAACAAGGTGACATGCCCGAGCTTATTTTTTGTTCCATGCTGTTTGTCTAAATTGCATTCATTAAGTACTGTAGTGACATATGCAGTGCTGGCGCCTTTGGCCATTTTTATTGCTGTCTGGCGCCTTTTACAACTAGATTAATTACATTTGCATTATGCATTTTCTTTGCATCCTGGATGCTTCCCTGTTGGACACACTATATTGATAAATCTAGTTCAAGTTACTACCTGCTGCCACAGGGGAAATCCGCAAGTAAATTTTAGCGATACAATATGGAAATTGTAAAGAGTGGCTTATATTTAAAGGTGTTCCACACCTTATTCTGGGAGGACTTTGCATAGTCTTGTTCCAGCCTACACTGGAATCTTGCACTGCACTTCACGTTAGTGTTGTAGCATATGGCTATAAGCTAACCCATACCTCTGAATTCTAAAGATTATCTTATGGGAGACAAACTGCAAATGAACATGAGATAATGAAATTTTCTACTGCATTACACGCTTTTGATTTGCTGATAATGATGATTATCATTTTTTCAGGGCATTCAGGAGACAGCGAGATCTCAAATATCCTCATCAAAGAGTGCAACTCCTGCACAGACTAGAAGTATAAAGACAAGGGCTCCCAACCCACCTCCGC CTCCTCCCCCACCGCGGCGAC CTTCTCAGATATCCAGCAAGACAAACACAAATAACTTGTCTGTTGGTGGAAGGAAGCCCAAGGCTTCTACTCCACACTGGCACTAA CCCAATCGAAAGT CTCC AATCTAGGA TCCTGCAGAACAAGA TAG CTGTGAAAAAATGTGAAGAAAAAATGAGGCATTCGACGCATCTAAAAGC ATTAACCGTGCTGTTCCTCGTTATCTTCTGTCATTAGTCGTTACTAGTACCACTTACCATCACT TTTTGTCACCTATTAGAAGTAACCGATGTAGTGTTCGTATCTACCAATCTGTAATATGT CCAGTTCTCCACTAATCCCGTAGTTCTACCGTCCAAGAATTTACCTAGAACATTGTATATACCTGAAATAAATGGAGCTTTTGGCTGATG                   ]
[+] EMBL BI805416             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             gAGAAGTATAAAGACAAGGGCTCCCAACCCACCTCCGCACTCCTCCCCCACCGCGGCGACACTTCTCAGATATCCAGCAAGAC AACACAAATAACTTGTCTGTTGGTGGAAGGAAGCCCAAGGCTTCTACTCCACACTGGCACTAACCCCAATCGAAAGTCCTCCAAATCTAGGATTCCTGCAGAACAAGATTAGCCTGTGAAAAAATGTGAAGAAAAAATGAGGCATTCGACGCATCTAAAAGCAATTAACCGTGCTGTTCCTCGTTATCTTCTGTCATTAGTCGTTACTAGTACCACTTACCATCACTCCCCTGTCACCTATTAGAAGTAACCGATGTAGTGTTCGTATCTACCAATCTGTAATATGTCCCAGTTCTCCACTAATCCCGTAGTTCTACCGTCCAAGAATTTACCTAGAACATTGTATATACCTGCAATCAATGGAGCTTTT GCTGATGAACCTTGACCAAAAAACAA]




>consensus_5862#0
CACATTTGGAGGGAAAGAGCACCCATGGTTTTGCAATTTTTTTCTTTGCCCTAGTTGCAT
CCAAGTCCAAAGTCCAAGCAGAGAGAGAGAGAGACGCTGCCTCAGTCGTCTCGTCTCGTC
ACGACAGCACAGTACACAAGCCTCCTCCTCCTCTTCAGCAGCTGCTTCACACTCACACTG
CCTCCTCTCTCTCTCTCTCTCTCTCTCTCCATCTTGCTGCTAAATCCATCCGCACCTAAT
CCGGCGTGCGGTGCGGGAGCAAGCAAGGAATCCACCCCCCCGTGGCGACAAGAGAATCGG
ATCGAGGGCGTGCAGGCGCAGCTGGCGAGCGAGCGAGCAGGGGAGGAGGGGAAGGAAAGC
TCTTGGTACACCCAACCGTAGAGGCGGAGAGGGCATCGGCTCAGACGGTGGCTGCAGTGC
AGGCCTCAGCTGGGGTCCTCGGCTCGGATCTGGGGAGGACGCGCCGCGGCGGAGGCGATG
CAGGGTTTGCTTGTAGTGAAATTCTGCACCCAATGAATTATACATACAATATATAAGATG
GCAGCAGAGGTCACTCAGAATTATTTTGCATGGTCACAGGAGGAATCACCTGTGCAAGAC
AGCTCTCAGGGAACACCACAAGTGTTCGACCATGGTTCCATATCTTTTGGAAGATTTGAG
TTGGAATCACTAGCATGGGAGAAGTGGTCTGTATTTGCCAATGATAGGCGCCATGAAGAG
TTTGGCAAGTTCAATGGTTTGGTTGCTAAGAAGAAGGCATACTTCGAAGAATACTTCAAG
AGAATTAGGGAGTTAAAGGCTTTACAACAACAAAACCAGCAAACTGAACTTAATCTTGAC
TATAGTGGTGATGGTAGTGATTCTAGTCAGACAGGAGAGGATGTGCCAACTGCAGATCAG
GCATCTCCTTCTGGATCTGGAACCCTTCTTGATTCCATGGTACAAACAGGTGTTCAGACT
ATATTTGAGAATGATTTGGAATGCTATGATGATAATGACAAAGAGATGTTAGATAAGGAT
ATTTCTCCATCAGTTGGAGGCACATGTCAAATTGAGCAAGAATTCAGAGAAAGTGCAAGC
GGTGGTAATCATCCTGACAGAATGGTGGATGTGTTGCAGCAAAACACCAACTGTGGTCCA
GATGATCTGGGAAGGCCCATGGAGTCTATGATGACTCCGAAGAGAACTGTCAAGAAAGAT
TCACTGGTTGGTCAAGCTGCAAAAACAATGCCAAAGACTGTCAATATGACTTCTAGTAAT
ATTCCGGGTCATGCAGTTGTTAATAAGGGAACTGATTCAGGCAAATCCAGTGTGGTGAAT
CGTAGAGCCAAGCCAGAAACTATTCAGCAAAGGCTAAAAGCAGTAACTGGCAATATTGTT
GACATCGTTGGAAGAAGCAAACTTGTGGTAAAAGAAGTCCCTGGTATAATGGGTGTTAGA
AGACCTTCCTCTCCAGCACTACAACGCCCCTCCACCAGGGAACGACGACCTGTCACCAGA
GATAGTTCACGGAAGGCTCCTGAAGTTGCCACCATGTGCCGGCCTTCTACTGCTGAAAGG
CGCCCTGCCACCCGGGAGTTGGCACCAAAGCAAGCCAACACAGTTGTTCCGTGTCGACCA
TCTACACCAAACAGGCGCCCTATGACCAGAGAGTTGGCGCCAGTGCATTCAAGCATTGCT
ACCCCACGTCGACCTTCTACTGCTGAAAGGCGCCCAATCACCAGAGGGATGGCACCAATG
CATCCTAGCATTGCTACCCCAGTTCGACCTTCCACTGCTGAGAGGCGCCCTACCTCAAAA
CAGATGGCTCAAAAGCATGTTGGTATGGCCACCCCATCTCGGCCATCCACTGCTGAAAGG
CGACCTATCACCAGAGAGGCTGCACGGAAAAACGCTGATGTTGCCATCTTGCATCGACCT
TCTACTGCCGAGAGACGCCCTATCACCAGAGAGACTCCACAGAAGCATGCTAACGTTGTC
GCACTGCATCGGCCTTCTACTGCGGAGAGACGACCTGTTGTTAGAGAGATTGCTCCAAAG
CATGCTGATGTCACTCTCACTCCTGCACGCCGGCCATCTACCTCTGAAAGACGCCCTGTC
ACCAGAGAGACTGCACTGAGGCACAGTAATTTCACCGGTTCATGTTGGCCTTTGACTCCT
CAAAGGCACATCAGCAGGGGAAGTGCACAAATACATGCTGACGTTAGCACCACCCCGCGT
CATCCATCTACTGGAGAAAGGCGCCCTATCACCAAAGAGAGTAACATAAAATTGGATGAA
AAAACACCTATCAAGTTGAGAGGCATGCTGGCTAACCCAAAGGGTGCTATGGCTACAGTA
GTCACTCCCCAGAAGGCAATTACTCGAAAGCTTGTTAAGAGTAGCAAGCCAGAAATGAAA
AGTTGTGCTAAAGAGAGGACAGAACTTCAAGCAGTTGGGAAACACAAAGCAAGTTCTGTT
AACCTTCCTCCAAGGGAAATGTTTACTTCAAATGTTAGAGCCAATCGAGTCCCAGAAAGC
TTCAGAAAGCCAAACAAGGTGACATGCCCGAGCTTATTTTTTGTTCCATGCTGTTTGTCT
AAATTGCATTCATTAAGTACTGTAGTGACATATGCAGTGCTGGCGCCTTTGGCCATTTTT
ATTGCTGTCTGGCGCCTTTTACAACTAGATTAATTACATTTGCATTATGCATTTTCTTTG
CATCCTGGATGCTTCCCTGTTGGACACACTATATTGATAAATCTAGTTCAAGTTACTACC
TGCTGCCACAGGGGAAATCCGCAAGTAAATTTTAGCGATACAATATGGAAATTGTAAAGA
GTGGCTTATATTTAAAGGTGTTCCACACCTTATTCTGGGAGGACTTTGCATAGTCTTGTT
CCAGCCTACACTGGAATCTTGCACTGCACTTCACGTTAGTGTTGTAGCATATGGCTATAA
GCTAACCCATACCTCTGAATTCTAAAGATTATCTTATGGGAGACAAACTGCAAATGAACA
TGAGATAATGAAATTTTCTACTGCATTACACGCTTTTGATTTGCTGATAATGATGATTAT
CATTTTTTCAGGGCATTCAGGAGACAGCGAGATCTCAAATATCCTCATCAAAGAGTGCAA
CTCCTGCACAGACTAGAAGTATAAAGACAAGGGCTCCCAACCCACCTCCGCCTCCTCCCC
CACCGCGGCGACCTTCTCAGATATCCAGCAAGACAAACACAAATAACTTGTCTGTTGGTG
GAAGGAAGCCCAAGGCTTCTACTCCACACTGGCACTAACCCAATCGAAAGTCTCCAATCT
AGGATCCTGCAGAACAAGATAGCTGTGAAAAAATGTGAAGAAAAAATGAGGCATTCGACG
CATCTAAAAGCATTAACCGTGCTGTTCCTCGTTATCTTCTGTCATTAGTCGTTACTAGTA
CCACTTACCATCACTTTTTGTCACCTATTAGAAGTAACCGATGTAGTGTTCGTATCTACC
AATCTGTAATATGTCCAGTTCTCCACTAATCCCGTAGTTCTACCGTCCAAGAATTTACCT
AGAACATTGTATATACCTGAAATAAATGGAGCTTTTGGCTGATGAACCTTGACCAAAAAA
CAA

consensusID : consensus_5862#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 557
fasta sequence 
                              [GAGTCCCAGAAAGCTTCAGAAAGCCAAACAAGGCATTCAGGAGACAGCGAGATCTCAATATCCTCATCAAAGAGTGCAACTCCTGCACAGACTAGAAGTATAAAGACAAGGGCTCCCAACCCACCTCCGCCTCCTCCCCCACCGCGGCGACCTTCTCAGATATCCAGCAAGACAAACACAAATAACTTGTCTGTTGGTGGAAGGAAGCCCAAGGCTTCTACTCCACACTGGCACTAACCCATCGAAAGTCTCCAATCTAGGATCCTGCAGAACAAGATAGCTGTGAAAAAATGTGAAGAAAAAATGAGGCATTCGACGCATCTAAAAGCATTAACCGTGCTGTTCCTCGTTATCTTCTGTCATTAGTCGTTACTAGTACCACTTACCATCACTTTTTGTCACCTATTAGAAGTAACCGATGTAGTGTTCGTATCTACCATCTGTAATATGTCCAGTTCTCCACTAATCCCGTAGTTCTACCGTCCAAGAATTTACCTAGAACATTGTATATACCTGAAATAAATGGAGCTTTTGGCTGATGAACCTTGACCAAAAAA]

[+] EMBL BI806894             [GAGTCCCAGAAAGCTTCAGAAAGCCAAACAAGGCATTCAGGAGACAGCGAGATCTCAATATCCTCATCAAAGAGTGCAACTCCTGCACAGACTAGAAGTATAAAGACAAGGGCTCCCAACCCACCTCCGCCTCCTCCCCCACCGCGGCGACCTTCTCAGATATCCAGCAAGACAAACACAAATAACTTGTCTGTTGGTGGAAGGAAGCCCAAGGCTTCTACTCCACACTGGCACTAACCCATCGAAAGTCTCCAATCTAGGATCCTGCAGAACAAGATAGCTGTGAAAAAATGTGAAGAAAAAATGAGGCATTCGACGCATCTAAAAGCATTAACCGTGCTGTTCCTCGTTATCTTCTGTCATTAGTCGTTACTAGTACCACTTACCATCACTTTTTGTCACCTATTAGAAGTAACCGATGTAGTGTTCGTATCTACCATCTGTAATATGTCCAGTTCTCCACTAATCCCGTAGTTCTACCGTCCAAGAATTTACCTAGAACATTGTATATACCTGAAATAAATGGAGCTTTTGGCTGATGAACCTTGACCAAAAAA]




>consensus_5862#1
GAGTCCCAGAAAGCTTCAGAAAGCCAAACAAGGCATTCAGGAGACAGCGAGATCTCAATA
TCCTCATCAAAGAGTGCAACTCCTGCACAGACTAGAAGTATAAAGACAAGGGCTCCCAAC
CCACCTCCGCCTCCTCCCCCACCGCGGCGACCTTCTCAGATATCCAGCAAGACAAACACA
AATAACTTGTCTGTTGGTGGAAGGAAGCCCAAGGCTTCTACTCCACACTGGCACTAACCC
ATCGAAAGTCTCCAATCTAGGATCCTGCAGAACAAGATAGCTGTGAAAAAATGTGAAGAA
AAAATGAGGCATTCGACGCATCTAAAAGCATTAACCGTGCTGTTCCTCGTTATCTTCTGT
CATTAGTCGTTACTAGTACCACTTACCATCACTTTTTGTCACCTATTAGAAGTAACCGAT
GTAGTGTTCGTATCTACCATCTGTAATATGTCCAGTTCTCCACTAATCCCGTAGTTCTAC
CGTCCAAGAATTTACCTAGAACATTGTATATACCTGAAATAAATGGAGCTTTTGGCTGAT
GAACCTTGACCAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5862#0      CACATTTGGAGGGAAAGAGCACCCATGGTTTTGCAATTTTTTTCTTTGCCCTAGTTGCAT 60
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      CCAAGTCCAAAGTCCAAGCAGAGAGAGAGAGAGACGCTGCCTCAGTCGTCTCGTCTCGTC 120
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      ACGACAGCACAGTACACAAGCCTCCTCCTCCTCTTCAGCAGCTGCTTCACACTCACACTG 180
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      CCTCCTCTCTCTCTCTCTCTCTCTCTCTCCATCTTGCTGCTAAATCCATCCGCACCTAAT 240
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      CCGGCGTGCGGTGCGGGAGCAAGCAAGGAATCCACCCCCCCGTGGCGACAAGAGAATCGG 300
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      ATCGAGGGCGTGCAGGCGCAGCTGGCGAGCGAGCGAGCAGGGGAGGAGGGGAAGGAAAGC 360
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      TCTTGGTACACCCAACCGTAGAGGCGGAGAGGGCATCGGCTCAGACGGTGGCTGCAGTGC 420
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      AGGCCTCAGCTGGGGTCCTCGGCTCGGATCTGGGGAGGACGCGCCGCGGCGGAGGCGATG 480
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      CAGGGTTTGCTTGTAGTGAAATTCTGCACCCAATGAATTATACATACAATATATAAGATG 540
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      GCAGCAGAGGTCACTCAGAATTATTTTGCATGGTCACAGGAGGAATCACCTGTGCAAGAC 600
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      AGCTCTCAGGGAACACCACAAGTGTTCGACCATGGTTCCATATCTTTTGGAAGATTTGAG 660
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      TTGGAATCACTAGCATGGGAGAAGTGGTCTGTATTTGCCAATGATAGGCGCCATGAAGAG 720
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      TTTGGCAAGTTCAATGGTTTGGTTGCTAAGAAGAAGGCATACTTCGAAGAATACTTCAAG 780
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      AGAATTAGGGAGTTAAAGGCTTTACAACAACAAAACCAGCAAACTGAACTTAATCTTGAC 840
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      TATAGTGGTGATGGTAGTGATTCTAGTCAGACAGGAGAGGATGTGCCAACTGCAGATCAG 900
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      GCATCTCCTTCTGGATCTGGAACCCTTCTTGATTCCATGGTACAAACAGGTGTTCAGACT 960
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      ATATTTGAGAATGATTTGGAATGCTATGATGATAATGACAAAGAGATGTTAGATAAGGAT 1020
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      ATTTCTCCATCAGTTGGAGGCACATGTCAAATTGAGCAAGAATTCAGAGAAAGTGCAAGC 1080
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      GGTGGTAATCATCCTGACAGAATGGTGGATGTGTTGCAGCAAAACACCAACTGTGGTCCA 1140
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      GATGATCTGGGAAGGCCCATGGAGTCTATGATGACTCCGAAGAGAACTGTCAAGAAAGAT 1200
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      TCACTGGTTGGTCAAGCTGCAAAAACAATGCCAAAGACTGTCAATATGACTTCTAGTAAT 1260
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      ATTCCGGGTCATGCAGTTGTTAATAAGGGAACTGATTCAGGCAAATCCAGTGTGGTGAAT 1320
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      CGTAGAGCCAAGCCAGAAACTATTCAGCAAAGGCTAAAAGCAGTAACTGGCAATATTGTT 1380
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      GACATCGTTGGAAGAAGCAAACTTGTGGTAAAAGAAGTCCCTGGTATAATGGGTGTTAGA 1440
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      AGACCTTCCTCTCCAGCACTACAACGCCCCTCCACCAGGGAACGACGACCTGTCACCAGA 1500
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      GATAGTTCACGGAAGGCTCCTGAAGTTGCCACCATGTGCCGGCCTTCTACTGCTGAAAGG 1560
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      CGCCCTGCCACCCGGGAGTTGGCACCAAAGCAAGCCAACACAGTTGTTCCGTGTCGACCA 1620
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      TCTACACCAAACAGGCGCCCTATGACCAGAGAGTTGGCGCCAGTGCATTCAAGCATTGCT 1680
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      ACCCCACGTCGACCTTCTACTGCTGAAAGGCGCCCAATCACCAGAGGGATGGCACCAATG 1740
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      CATCCTAGCATTGCTACCCCAGTTCGACCTTCCACTGCTGAGAGGCGCCCTACCTCAAAA 1800
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      CAGATGGCTCAAAAGCATGTTGGTATGGCCACCCCATCTCGGCCATCCACTGCTGAAAGG 1860
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      CGACCTATCACCAGAGAGGCTGCACGGAAAAACGCTGATGTTGCCATCTTGCATCGACCT 1920
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      TCTACTGCCGAGAGACGCCCTATCACCAGAGAGACTCCACAGAAGCATGCTAACGTTGTC 1980
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      GCACTGCATCGGCCTTCTACTGCGGAGAGACGACCTGTTGTTAGAGAGATTGCTCCAAAG 2040
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      CATGCTGATGTCACTCTCACTCCTGCACGCCGGCCATCTACCTCTGAAAGACGCCCTGTC 2100
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      ACCAGAGAGACTGCACTGAGGCACAGTAATTTCACCGGTTCATGTTGGCCTTTGACTCCT 2160
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      CAAAGGCACATCAGCAGGGGAAGTGCACAAATACATGCTGACGTTAGCACCACCCCGCGT 2220
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      CATCCATCTACTGGAGAAAGGCGCCCTATCACCAAAGAGAGTAACATAAAATTGGATGAA 2280
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      AAAACACCTATCAAGTTGAGAGGCATGCTGGCTAACCCAAAGGGTGCTATGGCTACAGTA 2340
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      GTCACTCCCCAGAAGGCAATTACTCGAAAGCTTGTTAAGAGTAGCAAGCCAGAAATGAAA 2400
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      AGTTGTGCTAAAGAGAGGACAGAACTTCAAGCAGTTGGGAAACACAAAGCAAGTTCTGTT 2460
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      AACCTTCCTCCAAGGGAAATGTTTACTTCAAATGTTAGAGCCAATCGAGTCCCAGAAAGC 2520
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      TTCAGAAAGCCAAACAAGGTGACATGCCCGAGCTTATTTTTTGTTCCATGCTGTTTGTCT 2580
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      AAATTGCATTCATTAAGTACTGTAGTGACATATGCAGTGCTGGCGCCTTTGGCCATTTTT 2640
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      ATTGCTGTCTGGCGCCTTTTACAACTAGATTAATTACATTTGCATTATGCATTTTCTTTG 2700
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      CATCCTGGATGCTTCCCTGTTGGACACACTATATTGATAAATCTAGTTCAAGTTACTACC 2760
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      TGCTGCCACAGGGGAAATCCGCAAGTAAATTTTAGCGATACAATATGGAAATTGTAAAGA 2820
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      GTGGCTTATATTTAAAGGTGTTCCACACCTTATTCTGGGAGGACTTTGCATAGTCTTGTT 2880
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      CCAGCCTACACTGGAATCTTGCACTGCACTTCACGTTAGTGTTGTAGCATATGGCTATAA 2940
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      GCTAACCCATACCTCTGAATTCTAAAGATTATCTTATGGGAGACAAACTGCAAATGAACA 3000
consensus_5862#1      ------------------------------------------------------------
                                                                                  

consensus_5862#0      TGAGATAATGAAATTTTCTACTGCATTACACGCTTTTGATTTGCTGATAATGATGATTAT 3060
consensus_5862#1      -------------------------------------GAGTCCCAGAAAGCTTCAGAAAG 23
                                                           ** *  * ** *         * 

consensus_5862#0      CATTTTTTCAGGGCATTCAGGAGACAGCGAGATCTCAAATATCCTCATCAAAGAGTGCAA 3120
consensus_5862#1      C---CAAACAAGGCATTCAGGAGACAGCGAGATCTCAA-TATCCTCATCAAAGAGTGCAA 79
                      *       ** *************************** *********************

consensus_5862#0      CTCCTGCACAGACTAGAAGTATAAAGACAAGGGCTCCCAACCCACCTCCGCCTCCTCCCC 3180
consensus_5862#1      CTCCTGCACAGACTAGAAGTATAAAGACAAGGGCTCCCAACCCACCTCCGCCTCCTCCCC 139
                      ************************************************************

consensus_5862#0      CACCGCGGCGACCTTCTCAGATATCCAGCAAGACAAACACAAATAACTTGTCTGTTGGTG 3240
consensus_5862#1      CACCGCGGCGACCTTCTCAGATATCCAGCAAGACAAACACAAATAACTTGTCTGTTGGTG 199
                      ************************************************************

consensus_5862#0      GAAGGAAGCCCAAGGCTTCTACTCCACACTGGCACTAACCCAATCGAAAGTCTCCAATCT 3300
consensus_5862#1      GAAGGAAGCCCAAGGCTTCTACTCCACACTGGCACTAACCCA-TCGAAAGTCTCCAATCT 258
                      ****************************************** *****************

consensus_5862#0      AGGATCCTGCAGAACAAGATAGCTGTGAAAAAATGTGAAGAAAAAATGAGGCATTCGACG 3360
consensus_5862#1      AGGATCCTGCAGAACAAGATAGCTGTGAAAAAATGTGAAGAAAAAATGAGGCATTCGACG 318
                      ************************************************************

consensus_5862#0      CATCTAAAAGCATTAACCGTGCTGTTCCTCGTTATCTTCTGTCATTAGTCGTTACTAGTA 3420
consensus_5862#1      CATCTAAAAGCATTAACCGTGCTGTTCCTCGTTATCTTCTGTCATTAGTCGTTACTAGTA 378
                      ************************************************************

consensus_5862#0      CCACTTACCATCACTTTTTGTCACCTATTAGAAGTAACCGATGTAGTGTTCGTATCTACC 3480
consensus_5862#1      CCACTTACCATCACTTTTTGTCACCTATTAGAAGTAACCGATGTAGTGTTCGTATCTACC 438
                      ************************************************************

consensus_5862#0      AATCTGTAATATGTCCAGTTCTCCACTAATCCCGTAGTTCTACCGTCCAAGAATTTACCT 3540
consensus_5862#1      A-TCTGTAATATGTCCAGTTCTCCACTAATCCCGTAGTTCTACCGTCCAAGAATTTACCT 497
                      * **********************************************************

consensus_5862#0      AGAACATTGTATATACCTGAAATAAATGGAGCTTTTGGCTGATGAACCTTGACCAAAAAA 3600
consensus_5862#1      AGAACATTGTATATACCTGAAATAAATGGAGCTTTTGGCTGATGAACCTTGACCAAAAAA 557
                      ************************************************************

consensus_5862#0      CAA 3603
consensus_5862#1      ---


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)