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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5865#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1587 fasta sequence
[ACGCACACTCCGTTGCCCCCACAGCACGGAAATGGCTTCGTCGGAGACCCCGCCGCCGCCGTCGCCGGGCACCGGCGGCGCGGTGCCGCTCGCGCCGGCGCTCCTCGGCCTCCTCCGCTTCGTCCTGTCCTCCCACCTCGCCGCGCCTGACCCGGCCCTCCCGCTCTCCCCTTCCTACTGCTCCCGCCTCCTCCTCGACGACGACGACGACGACCTGCTCGAGAAGCTGGCGGCCGGTCTTGCCCGGTGCGTCGAGGAGGGGCGGCTCCCGGTGGCCGCGGCGGCGGCGGAGGCGGGGATCCCGGCGGGCGAGGCGTGGTCGGAGGAGAGGGAGAGGGAGTGGGAGGCGGTGGTGCTGGAGAAGGGGAACGAGTTGAAGAGGCTGGAACCAAAAAAGTTGAAGGGAGGTTGGCAGCTGGTAATTACAACCGGATTGCAGAAGGTTCTTTGCTTCTTTTCAATAAGTGTCTCTTGCTTAATGTTCAGGTAATCTTATTTTTAGTATCTTACCATTATCCTCACATAAGGATGAGATCATTGTGGCTTCTGGTAAATAAAATAAGTGTTTTTTTTTTGCCTCTTCTTCACATGAGATGATTTTGGTATTTTATCAAGAATGATTTTCCTTTAATAGACGCATGCTAACATGCAAGAGAAAAATTTCACTATTGGGTTGATAATACATTTCGATTTTATGAGTTGATAATACATTATGTCAAAATAATCCTTCTTTATCAATTATAGTTGAAAGTTTCGTTTGCTTAATTTTCTTTCAGGCGATTAGAAAATATGCCTCATTTTCAGAGATGCTGCAGGCAGAGATGATCTCAGAGGTTCTTCCTGGTATTTCATCAATTGAACAAGGAGTGGGAGTATATAGGAAATTCTATACGGAAGAAAAGGAAAGCTTTTATGGAGTCTTGGCAATCTCTGTTTCAAAGCCAACTGCTCAACCTTACATAATCATGACAGAGCTTCTTGCTGGCTTGGGTTCTGATGGATTGGGTAGACTCCTTGGTATGGTGAAAACTGCAGGTACAGTTCAAGATGGACTACCTCCTCCAAGATCTGTACTGATATCTTCTTGCATGAAGCTACATCAACCAAATGAGTAGCGATGGATGGTGGGGCAGCTTCCACGGAAGTGATGTAAAGAAAAACCAACTTGCATCCGAAATCATTGACCACTTGTTACGTGAATGCTGTTGGATGAATATTCATCTTACTCAACCCTATGGTCCTGTTTATGAAATCCGTGTGCATGAAGGTTATGGTGCCAGATGGTCTCAAGATGGCTCGAAGTTTATTGGATTCTTGGAGCCGTATAGTCCAGAGGGCTTCTCGAGAGGGTGGAAACACTAGAACAAGAAGACCTGCATGTTGTAGAGTGGTTCTTTTGCAACACTTGTATATGCATTGTCTATGCCAAGTTAAAAATTTTCTTACAGCAGCTGCTATGTCAAGCATTTTTGTACTTGTATTTTTTTTTAAAAAAAAAAACTTTGGTGTATTATTTTTCCTGGAATAACTTAGAACTGCATCCTGATGCTGGAAGTCTGTTAATACCAGAGCAGTTCATGGACATGA]
[+] EMBL AK063462 [ACGCACACTCCGTTGCCCCCACAGCACGGAAATGGCTTCGTCGGAGACCCCGCCGCCGCCGTCGCCGGGCACCGGCGGCGCGGTGCCGCTCGCGCCGGCGCTCCTCGGCCTCCTCCGCTTCGTCCTGTCCTCCCACCTCGCCGCGCCTGACCCGGCCCTCCCGCTCTCCCCTTCCTACTGCTCCCGCCTCCTCCTCGACGACGACGACGACGACCTGCTCGAGAAGCTGGCGGCCGGTCTTGCCCGGTGCGTCGAGGAGGGGCGGCTCCCGGTGGCCGCGGCGGCGGCGGAGGCGGGGATCCCGGCGGGCGAGGCGTGGTCGGAGGAGAGGGAGAGGGAGTGGGAGGCGGTGGTGCTGGAGAAGGGGAACGAGTTGAAGAGGCTGGAACCAAAAAAGTTGAAGGGAGGTTGGCAGCTGGTAATTACAACCGGATTGCAGAAGGTTCTTTGCTTCTTTTCAATAAGTGTCTCTTGCTTAATGTTCAGGTAATCTTATTTTTAGTATCTTACCATTATCCTCACATAAGGATGAGATCATTGTGGCTTCTGGTAAATAAAATAAGTGTTTTTTTTTTGCCTCTTCTTCACATGAGATGATTTTGGTATTTTATCAAGAATGATTTTCCTTTAATAGACGCATGCTAACATGCAAGAGAAAAATTTCACTATTGGGTTGATAATACATTTCGATTTTATGAGTTGATAATACATTATGTCAAAATAATCCTTCTTTATCAATTATAGTTGAAAGTTTCGTTTGCTTAATTTTCTTTCAGGCGATTAGAAAATATGCCTCATTTTCAGAGATGCTGCAGGCAGAGATGATCTCAGAGGTTCTTCCTGGTATTTCATCAATTGAACAAGGAGTGGGAGTATATAGGAAATTCTATACGGAAGAAAAGGAAAGCTTTTATGGAGTCTTGGCAATCTCTGTTTCAAAGCCAACTGCTCAACCTTACATAATCATGACAGAGCTTCTTGCTGGCTTGGGTTCTGATGGATTGGGTAGACTCCTTGGTATGGTGAAAACTGCAGGTACAGTTCAAGATGGACTACCTCCTCCAAGATCTGTACTGATATCTTCTTGCATGAAGCTACATCAACCAAATGAGTAGCGATGGATGGTGGGGCAGCTTCCACGGAAGTGATGTAAAGAAAAACCAACTTGCATCCGAAATCATTGACCACTTGTTACGTGAATGCTGTTGGATGAATATTCATCTTACTCAACCCTATGGTCCTGTTTATGAAATCCGTGTGCATGAAGGTTATGGTGCCAGATGGTCTCAAGATGGCTCGAAGTTTATTGGATTCTTGGAGCCGTATAGTCCAGAGGGCTTCTCGAGAGGGTGGAAACACTAGAACAAGAAGACCTGCATGTTGTAGAGTGGTTCTTTTGCAACACTTGTATATGCATTGTCTATGCCAAGTTAAAAATTTTCTTACAGCAGCTGCTATGTCAAGCATTTTTGTACTTGTATTTTTTTTTAAAAAAAAAAACTTTGGTGTATTATTTTTCCTGGAATAACTTAGAACTGCATCCTGATGCTGGAAGTCTGTTAATACCAGAGCAGTTCATGGACATGA]
consensusID : consensus_5865#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1376 fasta sequence
[CCCGCCCTTGCCGTCGCCGGGCACCGGCGGCGCGGTGCCGCTCGCGCCGGCGCTCCTCGGCCTCCTCCGCTTCGTCCTGTCCTCCCACCTCGCCGCGCCTGACCCGGCCCTCCCGCTCTCCCCTTCCTACTGCTCCCGCCTCCTCCTCGACGACGACGACGACGACCTGCTCGAGAAGCTGGCGGCCGGTCTTGCCCGGTGCGTCGAGGAGGGGCGGCTCCCGGTGGCCGCGGCGGCGGCGGAGGCGGGGATCCCGGCGGGCGAGGCGTGGTCGGAGGAGAGGGAGAGGGAGTGGGAGGCGGTGGTGCTGGAGAAGGGGAACGAGTTGAAGAGGATGTATGATGCTGTGGAGTTTGAGTTGCATGTTCAAGAACCATACTTCACTCAACTAAGAGCTGGAACCAAAAAAGTTGAAGGGAGGTTGGCAGCTGGTAATTACAACCGGATTGCAGAAGGTTCTTTGCTTCTTTTCAATAAGTGTCTCTTGCTTAATGTTCAGGCGATTAGAAAATATGCCTCATTTTCAGAGATGCTGCAGGCAGAGATGATCTCAGAGGTTCTTCCTGGTATTTCATCAATTGAACAAGGAGTGGGAGTATATAGGAAATTCTATACGGAAGAAAAGGAAAGCTTTTATGGAGTCTTGGCAATCTCTGTTTCAAAGCCAACTGCTCAACCTTACATAATCATGACAGAGCTTCTTGCTGGCTTGGCTTCTGATGGATTGGGTAGACTCCTTGGTATGGTGAAAACTGCAGGTACAGTTCAAGATGGGCTACCTCCTCCAAGATCTGTACTGATATCTTCTTGCATGAAGCTACATCAACCAAATGTAAATGGTTGTTCTCTAACTGATGCTGCAAGGGCAATGGCCAAACATGTTCACCGGAGTAACGATGGATGGTGGGGCAGCTTCCCCGGAAGTGATGTAAAGAAAAACCAACTTGCGTCCGAAATCATTGACCCCCTGTTACGTGAATGCTGTTGGATGAATATTCATCTTACTCAACCCTATGGTCCTGTTTATGAAATCCGTGTGCATGAAGGTTATGGTGCCAGATGGTCTCAAGATGGCTCGAAGTTTATTGGATTCTTGGAGCCGTATAGTCCAGAGGGCTTCTCGAGAGGGTGGAAACCCTAGAACAAGAAGACCTGCCTGTTGTAGAGTGGTTTTTTTGCAACCCTTGTATATGCATTGTCTATGCCCAGTTAAAAATTTTTTTACAGCAGGTGCTATGTCAAGCATTTTTGTACTTGTATTTTTTTTTAAAAAAAAAACTTTGGTGTATTATTTTTCCTGGAATAACTTAGAACTGCATCCTGATGCTGGAAGTCTGTTAATACCAGAGCAGTTCATGGAAAAAAAAAAAAAAAAA]
[+] EMBL CB680873 [CCCGCCCTTGCCGTCGCCGGGCACCGGCGGCGCGGTGCCGCTCGCGCCGGCGCTCCTCGGCCTCCTCCGCTTCGTCCTGTCCTCCCACCTCGCCGCGCCTGACCCGGCCCTCCCGCTCTCCCCTTCCTACTGCTCCCGCCTCCTCCTCGACGACGACGACGACGACCTGCTCGAGAAGCTGGCGGCCGGTCTTGCCCGGTGCGTCGAGGAGGGGCGGCTCCCGGTGGCCGCGGCGGCGGCGGAGGCGGGGATCCCGGCGGGCGAGGCGTGGTCGGAGGAGAGGGAGAGGGAGTGGGAGGCGGTGGTGCTGGAGAAGGGGAACGAGTTGAAGAGGATGTATGATGCTGTGGAGTTTGAGTTGCATGTTCAAGAACCATACTTCACTCAACTAAGAGCTGGAACCAAAAAAGTTGAAGGGAGGTTGGCAGCTGGTAATTACAACCGGATTGCAGAAGGTTCTTTGCTTCTTTTCAATAAGTGTCTCTTGCTTAATGTTCAGGCGATTAGAAAATATGCCTCATTTTCAGAGATGCTGCAGGCAGAGATGATCTCAGAGGTTCTTCCTGGTATTTCATCAATTGAACAAGGAGTGGGAGTATATAGGAAATTCTATACGGAAGAAAAGGAAAGCTTTTATGGAGTCTTGGCAATCTCTGTTTCAAAGCCAACTGCTCAACCTTACATAATCATGACAGAGCTTCTTGCTGGCTTGGCTTCTGATGGATTGGGTAGACTCCTTGGTATGGTGAAAA ]
[-] EMBL CA762192 [ ATAATCATGACAGAGCTTCTTGCTGGCTTGGGTTTTGATGGATTGGGTAGACTCCTTGGTATGGTGAAAACTGCAGGTACAGTTCAAGATGGGCTACCTCCTCCAAGATCTGTACTGATATCTTCTTGCATGAAGCTACATCAACCAAATGTAAATGGTTGTTCTCTAACTGATGCTGCAAGGGCAATGGCCAAACATGTTCACCGGAGTAACGATGGATGGTGGGGCAGCTTCCCCGGAAGTGATGTAAAGAAAAACCAACTTGCGTCCGAAATCATTGACCCCCTGTTACGTGAATGCTGTTGGATGAATATTCATCTTACTCAACCCTATGGTCCTGTTTATGAAATCCGTGTGCATGAAGGTTATGGTGCCAGATGGTCTCAAGATGGCTCGAAGTTTATTGGATTCTTGGAGCCGTATAGTCCAGAGGGCTTCTCGAGAGGGTGGAAACCCTAGAACAAGAAGACCTGCCTGTTGTAGAGTGGTTTTTTTGCAACCCTTGTATATGCATTGTCTATGCCCAGTTAAAAATTTTTTTACAGCAGGTGCTATGTCAAGCATTTTTGTACTTGTATTTTTTTTTAAAAAAAAAACTTTGGTGTATTATTTTTCCTGGAATAACTTAGAACTGCATCCTGATGCTGGAAGTCTGTTAATACCAGAGCAGTTCATGGAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5865#0 ACGCACACTCCGTTGCCCCCACAGCACGGAAATGGCTTCGTCGGAGACCCCGCCGCCGCC 60
consensus_5865#1 ------------------------------------------------CCCGCCCTTGCC 12
****** ***
consensus_5865#0 GTCGCCGGGCACCGGCGGCGCGGTGCCGCTCGCGCCGGCGCTCCTCGGCCTCCTCCGCTT 120
consensus_5865#1 GTCGCCGGGCACCGGCGGCGCGGTGCCGCTCGCGCCGGCGCTCCTCGGCCTCCTCCGCTT 72
************************************************************
consensus_5865#0 CGTCCTGTCCTCCCACCTCGCCGCGCCTGACCCGGCCCTCCCGCTCTCCCCTTCCTACTG 180
consensus_5865#1 CGTCCTGTCCTCCCACCTCGCCGCGCCTGACCCGGCCCTCCCGCTCTCCCCTTCCTACTG 132
************************************************************
consensus_5865#0 CTCCCGCCTCCTCCTCGACGACGACGACGACGACCTGCTCGAGAAGCTGGCGGCCGGTCT 240
consensus_5865#1 CTCCCGCCTCCTCCTCGACGACGACGACGACGACCTGCTCGAGAAGCTGGCGGCCGGTCT 192
************************************************************
consensus_5865#0 TGCCCGGTGCGTCGAGGAGGGGCGGCTCCCGGTGGCCGCGGCGGCGGCGGAGGCGGGGAT 300
consensus_5865#1 TGCCCGGTGCGTCGAGGAGGGGCGGCTCCCGGTGGCCGCGGCGGCGGCGGAGGCGGGGAT 252
************************************************************
consensus_5865#0 CCCGGCGGGCGAGGCGTGGTCGGAGGAGAGGGAGAGGGAGTGGGAGGCGGTGGTGCTGGA 360
consensus_5865#1 CCCGGCGGGCGAGGCGTGGTCGGAGGAGAGGGAGAGGGAGTGGGAGGCGGTGGTGCTGGA 312
************************************************************
consensus_5865#0 GAAGGGGAACGAGTTGAAGAGGCTGGAACCAAAAAAGTTGAAGGGAGGTTGGCAGCTGGT 420
consensus_5865#1 GAAGGGGAACGAGTTGAAGAGGATGTAT--------GATGCTGTGGAGTT---------- 354
********************** ** * * ** * * ***
consensus_5865#0 AATTACAACCGGATTGCAGAAGGTTCTTTGCTTCTTTTCAATAAGTGTCTCTTGCTTAAT 480
consensus_5865#1 ---------TGAGTTGCA-----------------------------------------T 364
* ***** *
consensus_5865#0 GTTCAGGTAATCTTATTTTTAGTATCTTACCATTATCCTCACATAAGGATGAGATCATTG 540
consensus_5865#1 GTTCAAG-AACCATACTT---------------------CACTCAACTAAGAG------- 395
***** * ** * ** ** *** ** * ***
consensus_5865#0 TGGCTTCTGGTAAATAAAATAAGTGTTTTTTTTTTGCCTCTTCTTCACATGAGATGATTT 600
consensus_5865#1 ------CTGG--AACCAAAAAAGT-------------------------TGAAGGGAGGT 422
**** ** *** **** *** ** *
consensus_5865#0 TGGTATTTTATCAAGAATGATTTTCCTTTAATAGACGCATGCTAACATGCAAGAGAAAAA 660
consensus_5865#1 TGGCAGCT-------GGTAATT--------ACAACCGGAT-------TGCAGAAGG---- 456
*** * * * *** * * ** ** **** **
consensus_5865#0 TTTCACTATTGGGTTGATAATACATTTCGATTTTATGAGTTGATAATACATTATGTCAAA 720
consensus_5865#1 ------------------------------TTCTTTG----------------------- 463
** * **
consensus_5865#0 ATAATCCTTCTTTATCAATTATAGTTGAAAGTTTCGTTTGCTTAATTTTCTTTCAGGCGA 780
consensus_5865#1 ------CTTCTTT-TCAAT---------AAGTGTCTCTTGCTTAATGTTC----AGGCGA 503
******* ***** **** ** ********* *** ******
consensus_5865#0 TTAGAAAATATGCCTCATTTTCAGAGATGCTGCAGGCAGAGATGATCTCAGAGGTTCTTC 840
consensus_5865#1 TTAGAAAATATGCCTCATTTTCAGAGATGCTGCAGGCAGAGATGATCTCAGAGGTTCTTC 563
************************************************************
consensus_5865#0 CTGGTATTTCATCAATTGAACAAGGAGTGGGAGTATATAGGAAATTCTATACGGAAGAAA 900
consensus_5865#1 CTGGTATTTCATCAATTGAACAAGGAGTGGGAGTATATAGGAAATTCTATACGGAAGAAA 623
************************************************************
consensus_5865#0 AGGAAAGCTTTTATGGAGTCTTGGCAATCTCTGTTTCAAAGCCAACTGCTCAACCTTACA 960
consensus_5865#1 AGGAAAGCTTTTATGGAGTCTTGGCAATCTCTGTTTCAAAGCCAACTGCTCAACCTTACA 683
************************************************************
consensus_5865#0 TAATCATGACAGAGCTTCTTGCTGGCTTGGGTTCTGATGGATTGGGTAGACTCCTTGGTA 1020
consensus_5865#1 TAATCATGACAGAGCTTCTTGCTGGCTTGGCTTCTGATGGATTGGGTAGACTCCTTGGTA 743
****************************** *****************************
consensus_5865#0 TGGTGAAAACTGCAGGTACAGTTCAAGATGGACTACCTCCTCCAAGATCTGTACTGATAT 1080
consensus_5865#1 TGGTGAAAACTGCAGGTACAGTTCAAGATGGGCTACCTCCTCCAAGATCTGTACTGATAT 803
******************************* ****************************
consensus_5865#0 CTTCTTGCATGAAGCTACATCAACCAAATG------------------------------ 1110
consensus_5865#1 CTTCTTGCATGAAGCTACATCAACCAAATGTAAATGGTTGTTCTCTAACTGATGCTGCAA 863
******************************
consensus_5865#0 --------------------------AGTAGCGATGGATGGTGGGGCAGCTTCCACGGAA 1144
consensus_5865#1 GGGCAATGGCCAAACATGTTCACCGGAGTAACGATGGATGGTGGGGCAGCTTCCCCGGAA 923
**** *********************** *****
consensus_5865#0 GTGATGTAAAGAAAAACCAACTTGCATCCGAAATCATTGACCACTTGTTACGTGAATGCT 1204
consensus_5865#1 GTGATGTAAAGAAAAACCAACTTGCGTCCGAAATCATTGACCCCCTGTTACGTGAATGCT 983
************************* **************** * ***************
consensus_5865#0 GTTGGATGAATATTCATCTTACTCAACCCTATGGTCCTGTTTATGAAATCCGTGTGCATG 1264
consensus_5865#1 GTTGGATGAATATTCATCTTACTCAACCCTATGGTCCTGTTTATGAAATCCGTGTGCATG 1043
************************************************************
consensus_5865#0 AAGGTTATGGTGCCAGATGGTCTCAAGATGGCTCGAAGTTTATTGGATTCTTGGAGCCGT 1324
consensus_5865#1 AAGGTTATGGTGCCAGATGGTCTCAAGATGGCTCGAAGTTTATTGGATTCTTGGAGCCGT 1103
************************************************************
consensus_5865#0 ATAGTCCAGAGGGCTTCTCGAGAGGGTGGAAACACTAGAACAAGAAGACCTGCATGTTGT 1384
consensus_5865#1 ATAGTCCAGAGGGCTTCTCGAGAGGGTGGAAACCCTAGAACAAGAAGACCTGCCTGTTGT 1163
********************************* ******************* ******
consensus_5865#0 AGAGTGGTTCTTTTGCAACACTTGTATATGCATTGTCTATGCCAAGTTAAAAATTTTCTT 1444
consensus_5865#1 AGAGTGGTTTTTTTGCAACCCTTGTATATGCATTGTCTATGCCCAGTTAAAAATTTTTTT 1223
********* ********* *********************** ************* **
consensus_5865#0 ACAGCAGCTGCTATGTCAAGCATTTTTGTACTTGTATTTTTTTTTAAAAAAAAAAACTTT 1504
consensus_5865#1 ACAGCAGGTGCTATGTCAAGCATTTTTGTACTTGTATTTTTTTTTAAAAAAAAAA-CTTT 1282
******* *********************************************** ****
consensus_5865#0 GGTGTATTATTTTTCCTGGAATAACTTAGAACTGCATCCTGATGCTGGAAGTCTGTTAAT 1564
consensus_5865#1 GGTGTATTATTTTTCCTGGAATAACTTAGAACTGCATCCTGATGCTGGAAGTCTGTTAAT 1342
************************************************************
consensus_5865#0 ACCAGAGCAGTTCATGGACATGA----------- 1587
consensus_5865#1 ACCAGAGCAGTTCATGGAAAAAAAAAAAAAAAAA 1376
****************** * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||