cluster # 5868

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Oryza sativa
cluster # 5868 cluster # 5868 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5868#0 length = 472 sequences # 2

consensus_5868#1 length = 315 sequences # 1

consensusID : consensus_5868#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 472
fasta sequence

                              [TCATCTTCAGTTGCTTGAGCTTAATTACAGACTGAGAGAAGATGTCTTGCAGCTGTGGATCTAGCTGCAGCTGCGGCTCAAACTGCTCCTGCGGAAAGAAGTACCCTGACCTGGAAGAGAAGAGCAGCAGCACCAAGGCCACCGTCGTGCTGGGTGTGGCGCCGGAGAAGAAGGCGCAGCAGTTTGAGGCGGCCGCAGAGTCCGGCGAGACCGCCCATGGCTGCAGCTGCGGTTCCAGCTGCAGGTGCAACCCTTGCAACTGTTAAGATGCCTGCCTGCATCTACCATCTATGTGAATTGTGATGCAGAAAAATAAAGAAGCTTGGCCATTTGGGTTGGTGCTTGACCAATATATATGGTGTGTGTGTGTGTGTGTGATGGGTTAATCGATGTGCTATGTTATTGGTTTCACTATTCACGTACTATGCTTGTAATGGTGTATCCACAGATGAAGTGATGAATATATTAAACT]

[+] EMBL OSU43529             [TCATCTTCAGTTGCTTGAGCTTAATTACAGACTGAGAGAAGATGTCTTGCAGCTGTGGATCTAGCTGCAGCTGCGGCTCAAACTGCTCCTGCGGAAAGAAGTACCCTGACCTGGAAGAGAAGAGCAGCAGCACCAAGGCCACCGTCGTGCTGGGTGTGGCGCCGGAGAAGAAGGCGCAGCAGTTTGAGGCGGCCGCAGAGTCCGGCGAGACCGCCCATGGCTGCAGCTGCGGTTCCAGCTGCAGGTGCAACCCTTGCAACTGTTAAGATGCCTGCCTGCATCTACCATCTATGTGAATTGTGATGCAGAAAAATAAAGAAGCTTGGCCATTTGGGTTGGTGCTTGACCAATATATATGGTGTGTGTGTGTGTGTGTGATGGGTTAATCGATGTGCTATGTTATTGGTTTCACTATTCACGTACTATGCTTGTAATGGTGTATCCACAGATGAAGTGATGAATATATTAAACT]
[-] EMBL D42585               [                                                                                                                                                                                                                               nAGCTGCNGTTCCAGCTGCAGGTGCAACCCTTGCAACTGTTAAGATGCCTGCCTGCATCTACCATCTATGTGAANTGTGATGCAGAAAAATAAAGAAGCTTGGCCATTTGGGTTGGTGCTTGACCAATATATATGGTGTGTGTGTGTGTGTGTGATGGGTTAATCGATGTGCTATGTTATTGGTTTCACTATTCACGTACTATGCTTGTAATGGTGTATCCACAGATGAAGTGATGAATATATTAAACT]




>consensus_5868#0
TCATCTTCAGTTGCTTGAGCTTAATTACAGACTGAGAGAAGATGTCTTGCAGCTGTGGAT
CTAGCTGCAGCTGCGGCTCAAACTGCTCCTGCGGAAAGAAGTACCCTGACCTGGAAGAGA
AGAGCAGCAGCACCAAGGCCACCGTCGTGCTGGGTGTGGCGCCGGAGAAGAAGGCGCAGC
AGTTTGAGGCGGCCGCAGAGTCCGGCGAGACCGCCCATGGCTGCAGCTGCGGTTCCAGCT
GCAGGTGCAACCCTTGCAACTGTTAAGATGCCTGCCTGCATCTACCATCTATGTGAATTG
TGATGCAGAAAAATAAAGAAGCTTGGCCATTTGGGTTGGTGCTTGACCAATATATATGGT
GTGTGTGTGTGTGTGTGATGGGTTAATCGATGTGCTATGTTATTGGTTTCACTATTCACG
TACTATGCTTGTAATGGTGTATCCACAGATGAAGTGATGAATATATTAAACT

consensusID : consensus_5868#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 315
fasta sequence

                              [CGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTCTGTAATTAAGCTCAAGACCTCGGCCGCGACCACGTCGAGCGGCCGCCCGGCAGGTACCAACTTCGAAGTAAAGCCAACAATTTGGTAACAAATAATAATACGATGACATTTCTAATTCACAGCCAGAAACCTCATAATAAAACTTAGAACTGACCAGAATATATCTCCATGTGTCGCTGCAGCAGACGTGGCACAGTAAAATGTTCAATACTTCAAACCTTCACCAAATTTACTAGGCCTTGGCTATGAAG]

[+] EMBL CD645584             [CGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTCTGTAATTAAGCTCAAGACCTCGGCCGCGACCACGTCGAGCGGCCGCCCGGCAGGTACCAACTTCGAAGTAAAGCCAACAATTTGGTAACAAATAATAATACGATGACATTTCTAATTCACAGCCAGAAACCTCATAATAAAACTTAGAACTGACCAGAATATATCTCCATGTGTCGCTGCAGCAGACGTGGCACAGTAAAATGTTCAATACTTCAAACCTTCACCAAATTTACTAGGCCTTGGCTATGAAG]




>consensus_5868#1
CGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTC
AGTCTGTAATTAAGCTCAAGACCTCGGCCGCGACCACGTCGAGCGGCCGCCCGGCAGGTA
CCAACTTCGAAGTAAAGCCAACAATTTGGTAACAAATAATAATACGATGACATTTCTAAT
TCACAGCCAGAAACCTCATAATAAAACTTAGAACTGACCAGAATATATCTCCATGTGTCG
CTGCAGCAGACGTGGCACAGTAAAATGTTCAATACTTCAAACCTTCACCAAATTTACTAG
GCCTTGGCTATGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5868#0      TCATCTTCAGTTGCTTGAGCTTAATTACAGACTGAGAGAAGATGTCTTGCAGCTGTGGAT 60
consensus_5868#1      -----------------------------------------------CGCAGGAGCAGTT 13
                                                                      ****  *  * *

consensus_5868#0      CTAGCTGCAGCTGCGGCTCAAACTGCTCCTGCGGAAAGAAGTACCCTGACCTGGAAGAGA 120
consensus_5868#1      TGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTCTGTAATTAA 73
                        *** ******** ***  * *  *  ****   *     *  *     *** **   *

consensus_5868#0      AGAGCAGCAGCACCAAGGCCACCGTCGTGCTGGGTGTGGCGCCGGAGAAGAAGGCGCAGC 180
consensus_5868#1      G----CTCAAGACCTCGGCCGCGACCACGTCGAGCG-GCCGCCCGGCAGGTACCAACTTC 128
                             **  ***  **** *   *  *  * * * * **** *  * * *    *  *

consensus_5868#0      AGTTTGAGGCGGCCGCAGAGTCCGGCGAGACCGCCCATGGCTGCAGCTGCGGTTCCAGCT 240
consensus_5868#1      GAAGTAAAGCCAAC----AATTTGGTAA---CAAATAATAATACGATGACATTTCTAATT 181
                          * * **   *    * *  **  *   *    *    * *     *  *** *  *

consensus_5868#0      -GCAGGTGCAACCCTTGCAACTG--TTAAGATGCCTGCCTGCATCTACCATCTATGTGAA 297
consensus_5868#1      CACAGCCAGAAACCTCATAATAAAACTTAGA-ACTGACCAGAATATATC-TCCATGTGT- 238
                        ***    ** ***   **      * ***  *   ** * ** ** * ** *****  

consensus_5868#0      TTGTGATGCAGAAA-AATAAAGAAGCTTGGCCATTTGGGTTGGTGCTTGACCAATATATA 356
consensus_5868#1      CGCTGCAGCAGACGTGGCACAGTAAAATGTTCAAT-ACTTCAAACCTTCACCAAATTTAC 297
                         **  *****      * ** *   **  ** *    *     *** *****  *   

consensus_5868#0      TGGTGTGTGTGTGTGTGTGTGATGGGTTAATCGATGTGCTATGTTATTGGTTTCACTATT 416
consensus_5868#1      TAGGCCTTGGCTATGAAG------------------------------------------ 315
                      * *    **  * **                                             

consensus_5868#0      CACGTACTATGCTTGTAATGGTGTATCCACAGATGAAGTGATGAATATATTAAACT 472
consensus_5868#1      --------------------------------------------------------