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Oryza sativa
cluster # 5869 cluster # 5869       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5869#0 length = 1779 sequences # 3  

consensusID : consensus_5869#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1779
fasta sequence
                              [TATCCCTCAACGTCCTGTACCGGATGTGTGATGACTTGTATGCATGACCAGTGAAGGAGCAAAGGGGTTCACTAGCACCAGCCGGGCCGTGCATGGAGCATGAACCGACCGTCCATGAGCTCACGGCCTCGTCACGGCGATGACGTACAGGCGACACACATCCAGCTGGGCCCCTCCTTCCATGTTCCAAGCCATTTCCTTTGGTGAGTTGTTCTTCCTCTTCCCCCCCTCCCGATCGCCCTCGTCGTCTACTTTTCCTCTCAACTTCCCACCGAGCACACCAATAAAAACTGCAGCTGCTGCCCAATAACCTATCTACTCTAGCAGTCTAGCTACGGCTGATGAGCAGGTGTCAATACAAGAGTAGCAAAGCTGAGAATATCTAGTTCCTACTTTGCTAGCTTTCCTAGTAATACTAGACTGCTAGCAGCAGCAATTAGCTATAGTAGCGGCTCCTCCCATGGCGTCTCCTGATGGTGGCGTTGGAGACGGCGGCGCGGAGCCACATGAAGTTATGGACGACCTGCTCGAGATGCGCGAGCAAGCGGCGATGCTCCACAGCATGCTACATGGGACATCGCCGTCGAGCTGTGCGGCGGCGGCGAGCACCAGGCAGCTGAATCAGCTGATAGACGGGGTGATGAGCAGGCTGCAGTCCAGCTCGCTGTCGGTGATGTCGCCTGGAGGAGGAGGAGGAAGAAGAGGATCGGGCGGGAGGAAGAAGAAAGGCGCCAAGGCCGTGGCCGGGCCGCACAGGCGGAGCAGCTCCGGTAGAAGAAGATCGAAAAGTCCTTTTGTCAGGATGGTCACGACCAAGGAGCTGGAGGACGGCAGGCAATGGCGAAAGTACGGGCAGAAACATATACAGGACTCCCCAAATAATCCAAGGAGCTACTACAGGTGCACGCATAGGCCAGACCAAGGTTGTATGGCCACAAAGCAAGTACAGACCTCCGAGTCTAACTCGTCGGAGTTCGTCATCAGCTACTACGGTGAGCACACCTGCAGCGACCCTTCCACCATCCCGTTCGTCGTCGAGGCCGAAGCTCCCGCTGCAGACTACGCGAACCTCATCAGCTTCGGATCCAGCGGCGGCGCGAGCACAAGCAGAGTCGACCCTCTTCGTCAGAGCCGCCATCGTTTGATGGCAGAAGCCGTTGATCCGACGCCGTCCTGCAGCTTCGCCAACTGCCACTCTCCGGTACTGTCCTCGGAGTGCGCCAGCGAGGCGGCGGCGCTCAGCAGCAGCCTGCCGCTCTCCGCCGTGGTGGGATCGGCGGTGACAACGCCGTCGACGTCGATCGTGGGTTCAGCGCCTGCGGATTACGACTGGCCGTCAGGGCTCGCCGGAGGTGACATGGCCGGCAGCTTCCCGTCCTCTCCCAGCAGCCTCGGGTTCATGACTGGCTCCTTTGGGAATCTTCCTGGGGATGACGACGACATGTTTGGCTTCGATCCTTAACAAGGGCTGTGCATGCATACATTCTTGCCATGCTAATTATTGCTACTACTAATATTCAAGAAAAACAAGTCCGCTATTTGCATGCAGAAGTGTATGCATGCATGCATAATACTATTGCTGTGAGGCTATAGCAAATTAGCAATACTTGTAGTACATGTGTGTACTGCTATTGGAGGAAATCCAATATATATACGGTACGTAGTAAATATGTGTATTAGTTGATCGCTGTACTAGTGAGTTGTGTGTATGTGATTTTGTAAGTATTGAAACATAATTTGAAATTAATATATAGTAGTGAAAGTAATAAAAAAAA--AAAA]

[+] EMBL AK110900             [TATCCCTCAACGTCCTGTACCGGATGTGTGATGACTTGTATGCATGACCAGTGAAGGAGCAAAGGGGTTCACTAGCACCAGCCGGGCCGTGCATGGAGCATGAACCGACCGTCCATGAGCTCACGGCCTCGTCACGGCGATGACGTACAGGCGACACACATCCAGCTGGGCCCCTCCTTCCATGTTCCAAGCCATTTCCTTTGGTGAGTTGTTCTTCCTCTTCCCCCCCTCCCGATCGCCCTCGTCGTCTACTTTTCCTCTCAACTTCCCACCGAGCACACCAATAAAAACTGCAGCTGCTGCCCAATAACCTATCTACTCTAGCAGTCTAGCTACGGCTGATGAGCAGGTGTCAATACAAGAGTAGCAAAGCTGAGAATATCTAGTTCCTACTTTGCTAGCTTTCCTAGTAATACTAGACTGCTAGCAGCAGCAATTAGCTATAGTAGCGGCTCCTCCCATGGCGTCTCCTGATGGTGGCGTTGGAGACGGCGGCGCGGAGCCACATGAAGTTATGGACGACCTGCTCGAGATGCGCGAGCAAGCGGCGATGCTCCACAGCATGCTACATGGGACATCGCCGTCGAGCTGTGCGGCGGCGGCGAGCACCAGGCAGCTGAATCAGCTGATAGACGGGGTGATGAGCAGGCTGCAGTCCAGCTCGCTGTCGGTGATGTCGCCTGGAGGAGGAGGAGGAAGAAGAGGATCGGGCGGGAGGAAGAAGAAAGGCGCCAAGGCCGTGGCCGGGCCGCACAGGCGGAGCAGCTCCGGTAGAAGAAGATCGAAAAGTCCTTTTGTCAGGATGGTCACGACCAAGGAGCTGGAGGACGGCAGGCAATGGCGAAAGTACGGGCAGAAACATATACAGGACTCCCCAAATAATCCAAGGAGCTACTACAGGTGCACGCATAGGCCAGACCAAGGTTGTATGGCCACAAAGCAAGTACAGACCTCCGAGTCTAACTCGTCGGAGTTCGTCATCAGCTACTACGGTGAGCACACCTGCAGCGACCCTTCCACCATCCCGTTCGTCGTCGAGGCCGAAGCTCCCGCTGCAGACTACGCGAACCTCATCAGCTTCGGATCCAGCGGCGGCGCGAGCACAAGCAGAGTCGACCCTCTTCGTCAGAGCCGCCATCGTTTGATGGCAGAAGCCGTTGATCCGACGCCGTCCTGCAGCTTCGCCAACTGCCACTCTCCGGTACTGTCCTCGGAGTGCGCCAGCGAGGCGGCGGCGCTCAGCAGCAGCCTGCCGCTCTCCGCCGTGGTGGGATCGGCGGTGACAACGCCGTCGACGTCGATCGTGGGTTCAGCGCCTGCGGATTACGACTGGCCGTCAGGGCTCGCCGGAGGTGACATGGCCGGCAGCTTCCCGTCCTCTCCCAGCAGCCTCGGGTTCATGACTGGCTCCTTTGGGAATCTTCCTGGGGATGACGACGACATGTTTGGCTTCGATCCTTAACAAGGGCTGTGCATGCATACATTCTTGCCATGCTAATTATTGCTACTACTAATATTCAAGAAAAACAAGTCCGCTATTTGCATGCAGAAGTGTATGCATGCATGCATAATACTATTGCTGTGAGGCTATAGCAAATTAGCAATACTTGTAGTACATGTGTGTACTGCTATTGGAGGAAATCCAATATATATACGGTACGTAGTAAATATGTGTATTAGTTGATCGCTGTACTAGTGAGTTGTGTGTATGTGATTTTGTAAGTATTGAAACATAATTTGAAATTAATATATAGTAG                        ]
[-] EMBL CF309076             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CGGCGGTGACAACGCCGTCGACGTCGATCGTGGGTTCAGCGCCTGCGGATTACGACTGGCCGTCAGGGCTCGCCGGAGGTGACATGGCCGGCAGCTTCCCGTCCTCTCCCAGCAGCCTCGGGTTCATGACTGGCTCCTTTGGGAATCTTCCTGGGGATGACGACGACATGTTTGGCTTCGATCCTTAACAAGGGCTGTGCATGCATACATTCTTGCCATGCTAATTATTGCTACTACTAATATTCAAGAAAAACAAGTCCGCTATTTGCATGCAGAAGTGTATGCATGCATGCATAATACTATTGCTGTGAGGCTATAGCAAATTAGCAATACTTGTAGTACATGTGTGTACTGCTATTGGAGGAAATCCAATATATATACGGTACGTAGTAAATATGTGTATTAGTTGATCGCTGTACTAGTGAGTTGTGTGTATGTGATTTTGTAAGTATTGAAACATAATTTGAAATTAATATATAGTAGTGAAAGTAATAAAAAAAA  AAAA]
[+] EMBL AU071221             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CCTCTCCCAGCAGCCTCGGGTTCATGACTGGCTCCTTTGGGAATCTTCCTGGGGATGACGACGACATGTTTGGCTTCGATCCTTAACAAGGGCTGTGCATGCATACATTCTTGCCATGCTAATTATTGCTACTACTAATATTCAAGAAAAACAAGTCCGCTATTTGCATGCAGAAGTGTATGCATGCATGCATAATACTATTGCTGTGAGGCTATAGCAAATTAGCAATACTTGTAGTACATGTGTGTACTGCTATTGGAGGAAATCCAATATATATACGGTACGTAGTAAATATGTGTATTAGTTGATCGCTGTACTAGTGAGTTGTGTGTATGTGATTTTGTAAGTATTGAAACATAATTTGAAATTAATATATAGTAGTGAAAGTAATATATAAGAGGAAAA]


>consensus_5869#0 TATCCCTCAACGTCCTGTACCGGATGTGTGATGACTTGTATGCATGACCAGTGAAGGAGC AAAGGGGTTCACTAGCACCAGCCGGGCCGTGCATGGAGCATGAACCGACCGTCCATGAGC TCACGGCCTCGTCACGGCGATGACGTACAGGCGACACACATCCAGCTGGGCCCCTCCTTC CATGTTCCAAGCCATTTCCTTTGGTGAGTTGTTCTTCCTCTTCCCCCCCTCCCGATCGCC CTCGTCGTCTACTTTTCCTCTCAACTTCCCACCGAGCACACCAATAAAAACTGCAGCTGC TGCCCAATAACCTATCTACTCTAGCAGTCTAGCTACGGCTGATGAGCAGGTGTCAATACA AGAGTAGCAAAGCTGAGAATATCTAGTTCCTACTTTGCTAGCTTTCCTAGTAATACTAGA CTGCTAGCAGCAGCAATTAGCTATAGTAGCGGCTCCTCCCATGGCGTCTCCTGATGGTGG CGTTGGAGACGGCGGCGCGGAGCCACATGAAGTTATGGACGACCTGCTCGAGATGCGCGA GCAAGCGGCGATGCTCCACAGCATGCTACATGGGACATCGCCGTCGAGCTGTGCGGCGGC GGCGAGCACCAGGCAGCTGAATCAGCTGATAGACGGGGTGATGAGCAGGCTGCAGTCCAG CTCGCTGTCGGTGATGTCGCCTGGAGGAGGAGGAGGAAGAAGAGGATCGGGCGGGAGGAA GAAGAAAGGCGCCAAGGCCGTGGCCGGGCCGCACAGGCGGAGCAGCTCCGGTAGAAGAAG ATCGAAAAGTCCTTTTGTCAGGATGGTCACGACCAAGGAGCTGGAGGACGGCAGGCAATG GCGAAAGTACGGGCAGAAACATATACAGGACTCCCCAAATAATCCAAGGAGCTACTACAG GTGCACGCATAGGCCAGACCAAGGTTGTATGGCCACAAAGCAAGTACAGACCTCCGAGTC TAACTCGTCGGAGTTCGTCATCAGCTACTACGGTGAGCACACCTGCAGCGACCCTTCCAC CATCCCGTTCGTCGTCGAGGCCGAAGCTCCCGCTGCAGACTACGCGAACCTCATCAGCTT CGGATCCAGCGGCGGCGCGAGCACAAGCAGAGTCGACCCTCTTCGTCAGAGCCGCCATCG TTTGATGGCAGAAGCCGTTGATCCGACGCCGTCCTGCAGCTTCGCCAACTGCCACTCTCC GGTACTGTCCTCGGAGTGCGCCAGCGAGGCGGCGGCGCTCAGCAGCAGCCTGCCGCTCTC CGCCGTGGTGGGATCGGCGGTGACAACGCCGTCGACGTCGATCGTGGGTTCAGCGCCTGC GGATTACGACTGGCCGTCAGGGCTCGCCGGAGGTGACATGGCCGGCAGCTTCCCGTCCTC TCCCAGCAGCCTCGGGTTCATGACTGGCTCCTTTGGGAATCTTCCTGGGGATGACGACGA CATGTTTGGCTTCGATCCTTAACAAGGGCTGTGCATGCATACATTCTTGCCATGCTAATT ATTGCTACTACTAATATTCAAGAAAAACAAGTCCGCTATTTGCATGCAGAAGTGTATGCA TGCATGCATAATACTATTGCTGTGAGGCTATAGCAAATTAGCAATACTTGTAGTACATGT GTGTACTGCTATTGGAGGAAATCCAATATATATACGGTACGTAGTAAATATGTGTATTAG TTGATCGCTGTACTAGTGAGTTGTGTGTATGTGATTTTGTAAGTATTGAAACATAATTTG AAATTAATATATAGTAGTGAAAGTAATAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)