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Oryza sativa
cluster # 5871 cluster # 5871       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5871#0 length = 1869 sequences # 3  

consensusID : consensus_5871#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1869
fasta sequence
                              [ACCATAAATGATCATATGACCGGGCGCTTTAGTGCTCTGGTAATTGGAATGAGTACAATCTCAAATCCCTTAACGAGGATCCACTTGGAGGGCAAGTCTGGTGCCATGCACCCGCGGTCAATTCCAGCATCCAATCAGCGTATATTTAAATTGTCTGCAGTTAAAAAGCTCTGTCAGTTGGACCTTGGCCGGCCTGCCGGTCCGCCTCATCGGCGAGCACCGACCTCGCTCGACCCTTCTCCGCGCGATGCGCTCCTGCCTTAACTGGCCGGTCGCTGCCTCCGGCGCCGTTACTTTGAAGAAATTAGAGTGCTCAAATCAAGCCATCGCTCTGGATACATTACCATGGGATAACATCATAGGATTCCGGTCCT-ATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAATAGGGACCGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAATCAAAAAGTTCAGAGTCTTCAGAGTTTCAGAACACTGT-AGCTACTTCAGAGTTCAGTGCAGAGAATCAGAGATGGCTAAGCTTGCTGTGTTGCTCACATTGCTGGCTCTGGTGGGCTCTGTGACATGCCAAGGCTATACCGGCAATGCTAGCCCACCCACACCCATTACATACCCAAGCCCGCCAAGCCTGAGCCCGAGCACGCCGCCTACTTATCCTCCACCTAGCTCGACTCCTCCGAGCCTAGCACCGGTGAGCCCGAGCCCGCCGACAACCCATCTTCCACCAAGCCCAACTCCTCCGAGCCCGGCTCCGGCAAGCCCAAGCCCGCCGTCCCTAGGGCTTAGAGTTGGTTATTACAGTTCCTCTTGCCCAAAAGCTGAGCAAATTGTGAAGGACACCGTCAAGAATGCTGTGTACACCAACCGCGGCATCGGCGCAGGGCTCGTCCGCCTCTTCTTTCATGACTGCTTCGTCGAGGGCTGCGACGCCTCCGTTCTGCTCGACCCGACGACGGCGAACTCGCGGCCGGAGAGGCTCGGCGTGCCCAACTTCCCCAGCCTCCGCGGCTTCGAGGTGATCGACGCGGCGAAGGCGGCGCTCGAGAGCGCGTGCCCCGGCGTCGTCTCCTGCGCCGACGTCGTCGCCTTCGCCGGCCGCGACGCCGCCTACTTCCTCAGCAACGCCAACATCGACTTCGCCATGCCGGCCGGCCGCTACGACGGGCGCGTCTCCCTCGCCGACGAGACCCTCACCAACCTGCCGTCGCCGTTCGCCGGGCTCGACCAGCTCAAGAAGAACTTCGCCGACAAGGGGCTCGACGCCGACGACATGGTCACCCTCTCCGGCGCGCACTCCATCGGCGTCTCCCACTGCTCCTCCTTCTCCGACCGCCTCGCCTCCACCACCTCCGACATGGACGCCGCGCTCAAGGCCAACCTGACGCGGGCGTGCAACCGCACCGGCGACCCCACGGTGGTGCAGGACCTCAAAACCCCCGACAAGCTGGACAACCAGTACTACCGGAACGTGCTCAGCCGCGACGTGCTCTTCACGTCGGACGCGGCGCTCCGGTCGTCGGAGACGGGGTTCAGCGTGTTCCTGAACGTGGTCATCCCCGGCCGGTGGGAGAGCAAGTTCGCGGCGGCGATGGTGAAGATGGGCGGTATTGGAATCAAGACCAGCGCCAATGGCGAGATCAGGAAGAACTGCCGCCTCGTCAACTAGCCGCCATTGATCATCGGCTAATGATCACAGTTCACGTCACAGAATAAGCTCGTGATTTTTGTTTGTCATATATTTTCCACCGATTAAAGGTTTAATTAGTTAGTTTAATTTTGCCATTCTTTTGTTGTAATTCTGCATGTATCTAATATTGGAATTTCAGCAAGTTTTAATGA]

[+] EMBL BI796272             [ACCATAAATGATCATATGACCGGGCGCTTTAGTGCTCTGGTAATTGGAATGAGTACAATCTCAAATCCCTTAACGAGGATCCACTTGGAGGGCAAGTCTGGTGCCATGCACCCGCGGTCAATTCCAGCATCCAATCAGCGTATATTTAAATTGTCTGCAGTTAAAAAGCTCTGTCAGTTGGACCTTGGCCGGCCTGCCGGTCCGCCTCATCGGCGAGCACCGACCTCGCTCGACCCTTCTCCGCGCGATGCGCTCCTGCCTTAACTGGCCGGTCGCTGCCTCCGGCGCCGTTACTTTGAAGAAATTAGAGTGCTCAAATCAAGCCATCGCTCTGGATACATTACCATGGGATAACATCATAGGATTCCGGTCCTAATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAATAGGGACCGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK109911             [                                                                                                                                                                                                                                                                                                                TTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAGGATTCCGGTCCT ATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAATCAAAAAGTTCAGAGTCTTCAGAGTTTCAGAACACTGT AGCTACTTCAGAGTTCAGTGCAGAGAATCAGAGATGGCTAAGCTTGCTGTGTTGCTCACATTGCTGGCTCTGGTGGGCTCTGTGACATGCCAAGGCTATACCGGCAATGCTAGCCCACCCACACCCATTACATACCCAAGCCCGCCAAGCCTGAGCCCGAGCACGCCGCCTACTTATCCTCCACCTAGCTCGACTCCTCCGAGCCTAGCACCGGTGAGCCCGAGCCCGCCGACAACCCATCTTCCACCAAGCCCAACTCCTCCGAGCCCGGCTCCGGCAAGCCCAAGCCCGCCGTCCCTAGGGCTTAGAGTTGGTTATTACAGTTCCTCTTGCCCAAAAGCTGAGCAAATTGTGAAGGACACCGTCAAGAATGCTGTGTACACCAACCGCGGCATCGGCGCAGGGCTCGTCCGCCTCTTCTTTCATGACTGCTTCGTCGAGGGCTGCGACGCCTCCGTTCTGCTCGACCCGACGACGGCGAACTCGCGGCCGGAGAGGCTCGGCGTGCCCAACTTCCCCAGCCTCCGCGGCTTCGAGGTGATCGACGCGGCGAAGGCGGCGCTCGAGAGCGCGTGCCCCGGCGTCGTCTCCTGCGCCGACGTCGTCGCCTTCGCCGGCCGCGACGCCGCCTACTTCCTCAGCAACGCCAACATCGACTTCGCCATGCCGGCCGGCCGCTACGACGGGCGCGTCTCCCTCGCCGACGAGACCCTCACCAACCTGCCGTCGCCGTTCGCCGGGCTCGACCAGCTCAAGAAGAACTTCGCCGACAAGGGGCTCGACGCCGACGACATGGTCACCCTCTCCGGCGCGCACTCCATCGGCGTCTCCCACTGCTCCTCCTTCTCCGACCGCCTCGCCTCCACCACCTCCGACATGGACGCCGCGCTCAAGGCCAACCTGACGCGGGCGTGCAACCGCACCGGCGACCCCACGGTGGTGCAGGACCTCAAAACCCCCGACAAGCTGGACAACCAGTACTACCGGAACGTGCTCAGCCGCGACGTGCTCTTCACGTCGGACGCGGCGCTCCGGTCGTCGGAGACGGGGTTCAGCGTGTTCCTGAACGTGGTCATCCCCGGCCGGTGGGAGAGCAAGTTCGCGGCGGCGATGGTGAAGATGGGCGGTATTGGAATCAAGACCAGCGCCAATGGCGAGATCAGGAAGAACTGCCGCCTCGTCAACTAGCCGCCATTGATCATCGGCTAATGATCACAGTTCACGTCACAGAATAAGCTCGTGATTTTTGTTTGTCATATATTTTCCACCGATTAAAGGTTTAATTAGTTAGTTTAATTTTGCCATTCTTTTGTTGTAATTCTGCATGTATCTAATATTGGAATTTCAGCAAGTTTTAATGA]
[+] EMBL CA753562             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GAACACTGTAACCTGCTTCAGAGTTCAGTGCAGAGAATCAGAGATGGCTAAGCTTGCTGTGCTGCTCACATTGCTGGCTCTGGTCGGTTCCGTGACATGCCAAGGCTATACCGGCAATGCTAGCCCACCCACACCCATTACATACCCAAGCCCGCCAAGCCTGAGCCCGAGCATGCCGCCTACTTATCCTCCACCTAGCTCGACTCCTCCGAGTCCAGCACCGGTGAGCCCGAGCCCGCCAACAACCTATCCTCCACCAAGCACAACTCCTCCGAACCCGGCTCCAACCAGCCCAAGCCCGCCGGCCCCGGGGCTTAGAGTTGGTTATTACAGTTCCTCTTGCCCAAAAGCTGAGCAAATTGTGAAGGACACCGTCAAGAACGCTGTGTACGCCAACCGCGGCATCGGCGCAGGGCTCGTCCGCCTCTTCTTTCATGACTGCTTCGTCGAGGGCTGCGACGCCTCCGTTCTGCTCGACCCGACGACGGCGAACTCGCGGCCGGAGAAGCTCGGCGTGCCCAACTTCCCCAGCCTCCGCGGCTTCGAGGTGATCGACGCGGCGAAGGCGGC CTCGAGAGCGCGTG CCCGGCGTGTTCT CTTCGCCGACCTTCT TCCTTCGCGGGCGCCAACCCCG TTAC TCC CAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]


>consensus_5871#0 ACCATAAATGATCATATGACCGGGCGCTTTAGTGCTCTGGTAATTGGAATGAGTACAATC TCAAATCCCTTAACGAGGATCCACTTGGAGGGCAAGTCTGGTGCCATGCACCCGCGGTCA ATTCCAGCATCCAATCAGCGTATATTTAAATTGTCTGCAGTTAAAAAGCTCTGTCAGTTG GACCTTGGCCGGCCTGCCGGTCCGCCTCATCGGCGAGCACCGACCTCGCTCGACCCTTCT CCGCGCGATGCGCTCCTGCCTTAACTGGCCGGTCGCTGCCTCCGGCGCCGTTACTTTGAA GAAATTAGAGTGCTCAAATCAAGCCATCGCTCTGGATACATTACCATGGGATAACATCAT AGGATTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAATAGGGACCGTC GGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAATCAAAAAGTT CAGAGTCTTCAGAGTTTCAGAACACTGTAGCTACTTCAGAGTTCAGTGCAGAGAATCAGA GATGGCTAAGCTTGCTGTGTTGCTCACATTGCTGGCTCTGGTGGGCTCTGTGACATGCCA AGGCTATACCGGCAATGCTAGCCCACCCACACCCATTACATACCCAAGCCCGCCAAGCCT GAGCCCGAGCACGCCGCCTACTTATCCTCCACCTAGCTCGACTCCTCCGAGCCTAGCACC GGTGAGCCCGAGCCCGCCGACAACCCATCTTCCACCAAGCCCAACTCCTCCGAGCCCGGC TCCGGCAAGCCCAAGCCCGCCGTCCCTAGGGCTTAGAGTTGGTTATTACAGTTCCTCTTG CCCAAAAGCTGAGCAAATTGTGAAGGACACCGTCAAGAATGCTGTGTACACCAACCGCGG CATCGGCGCAGGGCTCGTCCGCCTCTTCTTTCATGACTGCTTCGTCGAGGGCTGCGACGC CTCCGTTCTGCTCGACCCGACGACGGCGAACTCGCGGCCGGAGAGGCTCGGCGTGCCCAA CTTCCCCAGCCTCCGCGGCTTCGAGGTGATCGACGCGGCGAAGGCGGCGCTCGAGAGCGC GTGCCCCGGCGTCGTCTCCTGCGCCGACGTCGTCGCCTTCGCCGGCCGCGACGCCGCCTA CTTCCTCAGCAACGCCAACATCGACTTCGCCATGCCGGCCGGCCGCTACGACGGGCGCGT CTCCCTCGCCGACGAGACCCTCACCAACCTGCCGTCGCCGTTCGCCGGGCTCGACCAGCT CAAGAAGAACTTCGCCGACAAGGGGCTCGACGCCGACGACATGGTCACCCTCTCCGGCGC GCACTCCATCGGCGTCTCCCACTGCTCCTCCTTCTCCGACCGCCTCGCCTCCACCACCTC CGACATGGACGCCGCGCTCAAGGCCAACCTGACGCGGGCGTGCAACCGCACCGGCGACCC CACGGTGGTGCAGGACCTCAAAACCCCCGACAAGCTGGACAACCAGTACTACCGGAACGT GCTCAGCCGCGACGTGCTCTTCACGTCGGACGCGGCGCTCCGGTCGTCGGAGACGGGGTT CAGCGTGTTCCTGAACGTGGTCATCCCCGGCCGGTGGGAGAGCAAGTTCGCGGCGGCGAT GGTGAAGATGGGCGGTATTGGAATCAAGACCAGCGCCAATGGCGAGATCAGGAAGAACTG CCGCCTCGTCAACTAGCCGCCATTGATCATCGGCTAATGATCACAGTTCACGTCACAGAA TAAGCTCGTGATTTTTGTTTGTCATATATTTTCCACCGATTAAAGGTTTAATTAGTTAGT TTAATTTTGCCATTCTTTTGTTGTAATTCTGCATGTATCTAATATTGGAATTTCAGCAAG TTTTAATGA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)