cluster # 5872

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5872 cluster # 5872 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5872#0 length = 801 sequences # 2

consensus_5872#1 length = 658 sequences # 1

consensusID : consensus_5872#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 801
fasta sequence

                              [ACCAATTATTTATTATCCCTCAATAATACCACATTTATAGGATATTTATCAGTAAATTACATAAGATTTAGTTGTCGTGGAATAAAATTTCTCAATAAGAAGAGAGAGAATGTGGTTAGAGCTGTAGCGGTAGAACAGATTTTATTCCCTGCTCTTTTGCCATACTCGAGCTACATATTCTGGTGGTACTTTGCGAAGATTTACCATCTTAGTCCTAACACTAATATGTACCGAAAGTTAATTAAAACACACTCCTGGATTAGCATTCGGGCTCCGGTTGTGAGTAATCACCAGAGCTGATCGAGGTAATAATCTCTAGTGACGTCGTCGCTGAACTCCGAGTCCTCGTGGCGGCTCATCTCCGAGCTCTTCAAGCTGATGGCGCTGTCCGGCCGCGACTTCCTCGACCCGGCGCGGGCCAGGCTAGGCCTCGGCTCGCCGGCGGCGCCGTGCCGCTGCCTCGGCGCGCTTTGGCACCGCGCACGCGCCACGGACGACGCCGTGTCCGCCATGTACCGCGGGCTCACGACGCGCCCCTTCGCCGGCGACGCCGGGCCGTGGTACCCCGCCGGGAGCGCGGCGGCAAGCCGGGGCGTGTTGTGCGTCGTCTTCGGCTGCGCCCGCGCATCGTGCTCGTGCTCCTCGGCCTGGAGGTGGCGCGACGGCGGCGGCTTGTAGCAGTAGAGGTGCGGCGAGGACAGCGGCACCGACCCCGGCGTGCCGTCCGGCGGCGGGTCGGCGGCGTACCGGCTCGTGATCCGGGAAGACCGGCACCGGAGCTGGCACGTGTCCATCTCCACG]

[+] EMBL CB685102             [ACCAATTATTTATTATCCCTCAATAATACCACATTTATAGGATATTTATCAGTAAATTACATAAGATTTAGTTGTCGTGGAATAAAATTTCTCAATAAGAAGAGAGAGAATGTGGTTAGAGCTGTAGCGGTAGAACAGATTTTATTCCCTGCTCTTTTGCCATACTCGAGCTACATATTCTGGTGGTACTTTGCGAAGATTTACCATCTTAGTCCTAACACTAATATGTACCGAAAGTTAATTAAAACACACTCCTGGATTAGCATTCGGGCTCCGGTTGTGAGTAATCACCAGAGCTGATCGAGGTAATAATCTCTAGTGACGTCGTCGCTGAACTCCGAGTCCTCGTGGCGGCTCATCTCCGAGCTCTTCAAGCTGATGGCGCTGTCCGGCCGCGACTTCCTCGACCCGGCGCGGGCCAGGCTAGGCCTCGGCTCGCCGGCGGCGCCGTGCCGCTGCCTCGGCGCGCTTTGGCACCGCGCACGCGCCACGGACGACGCCGTGTCCGCCATGTACCGCGGGCTCACGACGCGCCCCTTCGCCGGCGACGCCGGGCCGTGGTACCCCGCCGGGAGCGCGGCGGCAAGCCGGGGCGTGTTGTGCGTCGTCTTCGGCTG                                                                                                                                                                                        ]
[+] EMBL CB645062             [                                                                                                                                        AGATTTTATCCTTTGGTCTTTTGCCATACTCGAGCTACATATTCTGGTGGTACTTTGCGAAGATTTACCATCTTAGTCCTAACACTAATATGTACCGAAAGTTAATTAAAACACACTCCTGGATTAGCATTCGGGCTCCGGTTGTGAGTAATCACCAGAGCTGATCGAGGTAATAATCTCTAGTGACGTCGTCGCTGAACTCCGAGTCCTCGTGGCGGCTCATCTCCGAGCTCTTCAAGCTGATGGCGCTGTCCGGCCGCGACTTCCTCGACCCGGCGCGGGCCAGGCTAGGCCTCGGCTCGCCGGCGGCGCCGTGCCGCTGCCTCGGCGCGCTCTGGCACCGCGCACGCGCCACGGACGACGCCGTGTCCGCCATGTACCGCGGGCTCACGACGCGCCCCTTCGCCGGCGACGCCGGGCCGTGGTACCCCGCCGGGAGCGCGGCGGCGAGCCGGGGCGTGTTGTGCGTCGTCTTCGGCTGCGCCCGCGCATCGTGCTCGTGCTCCTCGGCCTGGAGGTGGCGCGACGGCGGCGGCTTGTAGCAGTAGAGGTGCGGCGAGGACAGCGGCACCGACCCCGGCGTGCCGTCCGGCGGCGGGTCGGCGGCGTACCGGCTCGTGATCCGGGAAGACCGGCACCGGAGCTGGCACGTGTCCATCTCCACG]




>consensus_5872#0
ACCAATTATTTATTATCCCTCAATAATACCACATTTATAGGATATTTATCAGTAAATTAC
ATAAGATTTAGTTGTCGTGGAATAAAATTTCTCAATAAGAAGAGAGAGAATGTGGTTAGA
GCTGTAGCGGTAGAACAGATTTTATTCCCTGCTCTTTTGCCATACTCGAGCTACATATTC
TGGTGGTACTTTGCGAAGATTTACCATCTTAGTCCTAACACTAATATGTACCGAAAGTTA
ATTAAAACACACTCCTGGATTAGCATTCGGGCTCCGGTTGTGAGTAATCACCAGAGCTGA
TCGAGGTAATAATCTCTAGTGACGTCGTCGCTGAACTCCGAGTCCTCGTGGCGGCTCATC
TCCGAGCTCTTCAAGCTGATGGCGCTGTCCGGCCGCGACTTCCTCGACCCGGCGCGGGCC
AGGCTAGGCCTCGGCTCGCCGGCGGCGCCGTGCCGCTGCCTCGGCGCGCTTTGGCACCGC
GCACGCGCCACGGACGACGCCGTGTCCGCCATGTACCGCGGGCTCACGACGCGCCCCTTC
GCCGGCGACGCCGGGCCGTGGTACCCCGCCGGGAGCGCGGCGGCAAGCCGGGGCGTGTTG
TGCGTCGTCTTCGGCTGCGCCCGCGCATCGTGCTCGTGCTCCTCGGCCTGGAGGTGGCGC
GACGGCGGCGGCTTGTAGCAGTAGAGGTGCGGCGAGGACAGCGGCACCGACCCCGGCGTG
CCGTCCGGCGGCGGGTCGGCGGCGTACCGGCTCGTGATCCGGGAAGACCGGCACCGGAGC
TGGCACGTGTCCATCTCCACG

consensusID : consensus_5872#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 658
fasta sequence

                              [TGCCGCGGAGTGGGAGGCTACACACGCGAGCCCCCCCCGGCGGAACTTTGCGAAGATTTACCATCTTAGTCCTAACACTAATATGTACCGAAAGTTAATTAAAACACACTCCTGGATTAGCATTCGGGCTCCGGTTGTGAGTAATCACCAGAGCTGATCGAGGTAATAATCTCTAGTGACGTCGTCGCTGAACTCCGAGTCCTCGTGGCGGCTCATCTCCGAGCTCTTCAAGCTGATGGCGCTGTCCGGCCGCGACTTCCTCGACCCGGCGCGGGCCAGGCTAGGCCTCGGCTCGCCGGCGGCGCCGTGCCGCTGCCTCGGCGCGCTCTGGCACCGCGCACGCGCCACGGACGACGCCGTGTCCGCCATGTACCGCGGGCTCACGACGCGCCCCTTCGCCGGCGACGCCGGGCCGTGGTACCCCGCCGGGAGCGCGGCGGCGAGCCGGGGCGTGTTGTGCGTCGTCTTCGGCTGCGCCCGCGCATCGTGCTCGTGCTCCTCGGCCTGGAGGTGGCGCGACGGCGGCGGCTTGTAGCAGTAGAGGTGCGGCGAGGACAGCGGCACCGACCCCGGCGTGCCGTCCGGCGGCGGGTCGGCGGCGTAACGGCTCGTGATCCGGGAAGACCGGCACCGGAGCTGGCACGTGTCCATCTCCACG]

[+] EMBL CB645061             [TGCCGCGGAGTGGGAGGCTACACACGCGAGCCCCCCCCGGCGGAACTTTGCGAAGATTTACCATCTTAGTCCTAACACTAATATGTACCGAAAGTTAATTAAAACACACTCCTGGATTAGCATTCGGGCTCCGGTTGTGAGTAATCACCAGAGCTGATCGAGGTAATAATCTCTAGTGACGTCGTCGCTGAACTCCGAGTCCTCGTGGCGGCTCATCTCCGAGCTCTTCAAGCTGATGGCGCTGTCCGGCCGCGACTTCCTCGACCCGGCGCGGGCCAGGCTAGGCCTCGGCTCGCCGGCGGCGCCGTGCCGCTGCCTCGGCGCGCTCTGGCACCGCGCACGCGCCACGGACGACGCCGTGTCCGCCATGTACCGCGGGCTCACGACGCGCCCCTTCGCCGGCGACGCCGGGCCGTGGTACCCCGCCGGGAGCGCGGCGGCGAGCCGGGGCGTGTTGTGCGTCGTCTTCGGCTGCGCCCGCGCATCGTGCTCGTGCTCCTCGGCCTGGAGGTGGCGCGACGGCGGCGGCTTGTAGCAGTAGAGGTGCGGCGAGGACAGCGGCACCGACCCCGGCGTGCCGTCCGGCGGCGGGTCGGCGGCGTAACGGCTCGTGATCCGGGAAGACCGGCACCGGAGCTGGCACGTGTCCATCTCCACG]




>consensus_5872#1
TGCCGCGGAGTGGGAGGCTACACACGCGAGCCCCCCCCGGCGGAACTTTGCGAAGATTTA
CCATCTTAGTCCTAACACTAATATGTACCGAAAGTTAATTAAAACACACTCCTGGATTAG
CATTCGGGCTCCGGTTGTGAGTAATCACCAGAGCTGATCGAGGTAATAATCTCTAGTGAC
GTCGTCGCTGAACTCCGAGTCCTCGTGGCGGCTCATCTCCGAGCTCTTCAAGCTGATGGC
GCTGTCCGGCCGCGACTTCCTCGACCCGGCGCGGGCCAGGCTAGGCCTCGGCTCGCCGGC
GGCGCCGTGCCGCTGCCTCGGCGCGCTCTGGCACCGCGCACGCGCCACGGACGACGCCGT
GTCCGCCATGTACCGCGGGCTCACGACGCGCCCCTTCGCCGGCGACGCCGGGCCGTGGTA
CCCCGCCGGGAGCGCGGCGGCGAGCCGGGGCGTGTTGTGCGTCGTCTTCGGCTGCGCCCG
CGCATCGTGCTCGTGCTCCTCGGCCTGGAGGTGGCGCGACGGCGGCGGCTTGTAGCAGTA
GAGGTGCGGCGAGGACAGCGGCACCGACCCCGGCGTGCCGTCCGGCGGCGGGTCGGCGGC
GTAACGGCTCGTGATCCGGGAAGACCGGCACCGGAGCTGGCACGTGTCCATCTCCACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5872#0      ACCAATTATTTATTATCCCTCAATAATACCACATTTATAGGATATTTATCAGTAAATTAC 60
consensus_5872#1      ------------------------------------------------------------
                                                                                  

consensus_5872#0      ATAAGATTTAGTTGTCGTGGAATAAAATTTCTCAATAAGAAGAGAGAGAATGTGGTTAGA 120
consensus_5872#1      ------------------------------------------------------------
                                                                                  

consensus_5872#0      GCTGTAGCGGTAGAACAGATTTTATTCCCTGCTCTTTTGCCATACTCGAGCTACATATTC 180
consensus_5872#1      ----------------------TGCCGCGGAGTGGGAGGCTACACACGCGA-GCCCCCCC 37
                                            *    *    *     ** * ** ** *   *     *

consensus_5872#0      TGGTGGTACTTTGCGAAGATTTACCATCTTAGTCCTAACACTAATATGTACCGAAAGTTA 240
consensus_5872#1      CGGCGGAACTTTGCGAAGATTTACCATCTTAGTCCTAACACTAATATGTACCGAAAGTTA 97
                       ** ** *****************************************************

consensus_5872#0      ATTAAAACACACTCCTGGATTAGCATTCGGGCTCCGGTTGTGAGTAATCACCAGAGCTGA 300
consensus_5872#1      ATTAAAACACACTCCTGGATTAGCATTCGGGCTCCGGTTGTGAGTAATCACCAGAGCTGA 157
                      ************************************************************

consensus_5872#0      TCGAGGTAATAATCTCTAGTGACGTCGTCGCTGAACTCCGAGTCCTCGTGGCGGCTCATC 360
consensus_5872#1      TCGAGGTAATAATCTCTAGTGACGTCGTCGCTGAACTCCGAGTCCTCGTGGCGGCTCATC 217
                      ************************************************************

consensus_5872#0      TCCGAGCTCTTCAAGCTGATGGCGCTGTCCGGCCGCGACTTCCTCGACCCGGCGCGGGCC 420
consensus_5872#1      TCCGAGCTCTTCAAGCTGATGGCGCTGTCCGGCCGCGACTTCCTCGACCCGGCGCGGGCC 277
                      ************************************************************

consensus_5872#0      AGGCTAGGCCTCGGCTCGCCGGCGGCGCCGTGCCGCTGCCTCGGCGCGCTTTGGCACCGC 480
consensus_5872#1      AGGCTAGGCCTCGGCTCGCCGGCGGCGCCGTGCCGCTGCCTCGGCGCGCTCTGGCACCGC 337
                      ************************************************** *********

consensus_5872#0      GCACGCGCCACGGACGACGCCGTGTCCGCCATGTACCGCGGGCTCACGACGCGCCCCTTC 540
consensus_5872#1      GCACGCGCCACGGACGACGCCGTGTCCGCCATGTACCGCGGGCTCACGACGCGCCCCTTC 397
                      ************************************************************

consensus_5872#0      GCCGGCGACGCCGGGCCGTGGTACCCCGCCGGGAGCGCGGCGGCAAGCCGGGGCGTGTTG 600
consensus_5872#1      GCCGGCGACGCCGGGCCGTGGTACCCCGCCGGGAGCGCGGCGGCGAGCCGGGGCGTGTTG 457
                      ******************************************** ***************

consensus_5872#0      TGCGTCGTCTTCGGCTGCGCCCGCGCATCGTGCTCGTGCTCCTCGGCCTGGAGGTGGCGC 660
consensus_5872#1      TGCGTCGTCTTCGGCTGCGCCCGCGCATCGTGCTCGTGCTCCTCGGCCTGGAGGTGGCGC 517
                      ************************************************************

consensus_5872#0      GACGGCGGCGGCTTGTAGCAGTAGAGGTGCGGCGAGGACAGCGGCACCGACCCCGGCGTG 720
consensus_5872#1      GACGGCGGCGGCTTGTAGCAGTAGAGGTGCGGCGAGGACAGCGGCACCGACCCCGGCGTG 577
                      ************************************************************

consensus_5872#0      CCGTCCGGCGGCGGGTCGGCGGCGTACCGGCTCGTGATCCGGGAAGACCGGCACCGGAGC 780
consensus_5872#1      CCGTCCGGCGGCGGGTCGGCGGCGTAACGGCTCGTGATCCGGGAAGACCGGCACCGGAGC 637
                      ************************** *********************************

consensus_5872#0      TGGCACGTGTCCATCTCCACG 801
consensus_5872#1      TGGCACGTGTCCATCTCCACG 658
                      *********************