These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5879#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 473 fasta sequence [CGACAAGCTCAGCTCGGCTAGGCCAAGACGGTGGCGAGCGGCGGCGATCTGGTGCTCTGCTTGGGTTGAGTTCTTGATTTTGCCGAGGTGTATCGATGGAGACGACGGCGGCGAAGAAGCTGCCGCCGGGGTTCAGGTTCAGGCCCACCGACGAGGAGCTTGTGGTGCACTACCTCCGCCGCCGCGCGCTCGGCTCCCCTCTCCCGCCCGCCGTCGACATCCCCGATGTCCGCCTCCTCGCGCATGACCCCTCCGACCTGCTTCCTCCAGGTGAGTCATGAGCCAGCTCGCCGCCGTCGCGCGGCGTCGTCGGAGTGTGGCCGGCCGGCGCTGACGAGGTCCCGTGCGTGCAGGGTGGAGTGAGCAGGAGAGGTACTTCTTCACGTGCAAGGAGGCCAAGTATGTCAAGGGGCGCCGCGCCAACCGCGCCACGGGCGCCGGGTACTGGAAGGCGACGGGGAAGGAGAAGCCGG] [+] EMBL CB660101 [CGACAAGCTCAGCTCGGCTAGGCCAAGACGGTGGCGAGCGGCGGCGATCTGGTGCTCTGCTTGGGTTGAGTTCTTGATTTTGCCGAGGTGTATCGATGGAGACGACGGCGGCGAAGAAGCTGCCGCCGGGGTTCAGGTTCAGGCCCACCGACGAGGAGCTTGTGGTGCACTACCTCCGCCGCCGCGCGCTCGGCTCCCCTCTCCCGCCCGCCGTCGACATCCCCGATGTCCGCCTCCTCGCGCATGACCCCTCCGACCTGCTTCCTCCAGGTGAGTCATGAGCCAGCTCGCCGCCGTCGCGCGGCGTCGTCGGAGTGTGGCCGGCCGGCGCTGACGAGGTCCCGTGCGTGCAGGGTGGAGTGAGCAGGAGAGGTACTTCTTCACGTGCAAGGAGGCCAAGTATGTCAAGGGGCGCCGCGCCAACCGCGCCACGGGCGCCGGGTACTGGAAGGCGACGGGGAAGGAGAAGCCGG] consensusID : consensus_5879#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 397 fasta sequence [GCGACAACCTCTGCTCGGCTAGGCCAAGACGGTGGCGAGCGGCGGCGATCTGGTGCTCTGCTTGGGTTGAGTTCTTGATTTTGCCGAGGTGTATCGATGGAGACGACGGCGGCGAACAAGCTGCCGCCGGGGTTCAGGTTCAGGCCCACCGACGAGGAGCTTGTGGTGCACTACCTCCGCCGCCGCGCGCTCGGCTCCCCTCTCCCGCCCGCCGTCGACATCCCCGATGTCCGCCTCCTCGCGCATGACCCCTCCGACCTGCTTCCTCCAGGGTGGAGTGAGCAGGAGAGGTACTTCTTCACGTGCAAGGAGGCCAAGTATGTCAAGGGGCGCCGCGCCAACCGCGCCACGGGCGCCGGGTACTGGAAGGCGACGGGGAAGGAGAAGCCGGTGGCGG] [+] EMBL CB673580 [GCGACAACCTCTGCTCGGCTAGGCCAAGACGGTGGCGAGCGGCGGCGATCTGGTGCTCTGCTTGGGTTGAGTTCTTGATTTTGCCGAGGTGTATCGATGGAGACGACGGCGGCGAACAAGCTGCCGCCGGGGTTCAGGTTCAGGCCCACCGACGAGGAGCTTGTGGTGCACTACCTCCGCCGCCGCGCGCTCGGCTCCCCTCTCCCGCCCGCCGTCGACATCCCCGATGTCCGCCTCCTCGCGCATGACCCCTCCGACCTGCTTCCTCCAGGGTGGAGTGAGCAGGAGAGGTACTTCTTCACGTGCAAGGAGGCCAAGTATGTCAAGGGGCGCCGCGCCAACCGCGCCACGGGCGCCGGGTACTGGAAGGCGACGGGGAAGGAGAAGCCGGTGGCGG] [+] EMBL CB664906 [ CGATCTGCTGTTCTGCTTGGGTTGAGTTCTTGATTTTGCCGAGGTGTATCGATGGAGACGACGGCGGCGAAGAAGCTGCCGCCGGGGTTCAGGTTCAGGCCCACCGACGAGGAGCTTGTGGTGCACTACCTCCGCCGCCGCGCGCTCGGCTCCCCTCTCCCGCCCGCCGTCGACATCCCCGATGTCCGCCTCCTCGCGCATGACCCCTCCGACCTGCTTCCTCCAGGGTGGAGTGAGCAGGAGAGGTACTTCTTCACGTGCAAGGAGGCCAAGTATGTCAAGGGGCGCCGCGCCAACCGCGCCACGGGCGCCGGGTACTGGAAGGCGACGGGGAAGGAGAAGCCGGTGGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5879#0 -CGACAAGCTCAGCTCGGCTAGGCCAAGACGGTGGCGAGCGGCGGCGATCTGGTGCTCTG 59 consensus_5879#1 GCGACAACCTCTGCTCGGCTAGGCCAAGACGGTGGCGAGCGGCGGCGATCTGGTGCTCTG 60 ****** *** ************************************************ consensus_5879#0 CTTGGGTTGAGTTCTTGATTTTGCCGAGGTGTATCGATGGAGACGACGGCGGCGAAGAAG 119 consensus_5879#1 CTTGGGTTGAGTTCTTGATTTTGCCGAGGTGTATCGATGGAGACGACGGCGGCGAACAAG 120 ******************************************************** *** consensus_5879#0 CTGCCGCCGGGGTTCAGGTTCAGGCCCACCGACGAGGAGCTTGTGGTGCACTACCTCCGC 179 consensus_5879#1 CTGCCGCCGGGGTTCAGGTTCAGGCCCACCGACGAGGAGCTTGTGGTGCACTACCTCCGC 180 ************************************************************ consensus_5879#0 CGCCGCGCGCTCGGCTCCCCTCTCCCGCCCGCCGTCGACATCCCCGATGTCCGCCTCCTC 239 consensus_5879#1 CGCCGCGCGCTCGGCTCCCCTCTCCCGCCCGCCGTCGACATCCCCGATGTCCGCCTCCTC 240 ************************************************************ consensus_5879#0 GCGCATGACCCCTCCGACCTGCTTCCTCCAGGTGAGTCATGAGCCAGCTCGCCGCCGTCG 299 consensus_5879#1 GCGCATGACCCCTCCGACCTGCTTCCTCCAGG---------------------------- 272 ******************************** consensus_5879#0 CGCGGCGTCGTCGGAGTGTGGCCGGCCGGCGCTGACGAGGTCCCGTGCGTGCAGGGTGGA 359 consensus_5879#1 -------------------------------------------------------GTGGA 277 ***** consensus_5879#0 GTGAGCAGGAGAGGTACTTCTTCACGTGCAAGGAGGCCAAGTATGTCAAGGGGCGCCGCG 419 consensus_5879#1 GTGAGCAGGAGAGGTACTTCTTCACGTGCAAGGAGGCCAAGTATGTCAAGGGGCGCCGCG 337 ************************************************************ consensus_5879#0 CCAACCGCGCCACGGGCGCCGGGTACTGGAAGGCGACGGGGAAGGAGAAGCCGG------ 473 consensus_5879#1 CCAACCGCGCCACGGGCGCCGGGTACTGGAAGGCGACGGGGAAGGAGAAGCCGGTGGCGG 397 ****************************************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||