cluster # 5879

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Oryza sativa
cluster # 5879 cluster # 5879 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5879#0 length = 473 sequences # 1

consensus_5879#1 length = 397 sequences # 2

consensusID : consensus_5879#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 473
fasta sequence

                              [CGACAAGCTCAGCTCGGCTAGGCCAAGACGGTGGCGAGCGGCGGCGATCTGGTGCTCTGCTTGGGTTGAGTTCTTGATTTTGCCGAGGTGTATCGATGGAGACGACGGCGGCGAAGAAGCTGCCGCCGGGGTTCAGGTTCAGGCCCACCGACGAGGAGCTTGTGGTGCACTACCTCCGCCGCCGCGCGCTCGGCTCCCCTCTCCCGCCCGCCGTCGACATCCCCGATGTCCGCCTCCTCGCGCATGACCCCTCCGACCTGCTTCCTCCAGGTGAGTCATGAGCCAGCTCGCCGCCGTCGCGCGGCGTCGTCGGAGTGTGGCCGGCCGGCGCTGACGAGGTCCCGTGCGTGCAGGGTGGAGTGAGCAGGAGAGGTACTTCTTCACGTGCAAGGAGGCCAAGTATGTCAAGGGGCGCCGCGCCAACCGCGCCACGGGCGCCGGGTACTGGAAGGCGACGGGGAAGGAGAAGCCGG]

[+] EMBL CB660101             [CGACAAGCTCAGCTCGGCTAGGCCAAGACGGTGGCGAGCGGCGGCGATCTGGTGCTCTGCTTGGGTTGAGTTCTTGATTTTGCCGAGGTGTATCGATGGAGACGACGGCGGCGAAGAAGCTGCCGCCGGGGTTCAGGTTCAGGCCCACCGACGAGGAGCTTGTGGTGCACTACCTCCGCCGCCGCGCGCTCGGCTCCCCTCTCCCGCCCGCCGTCGACATCCCCGATGTCCGCCTCCTCGCGCATGACCCCTCCGACCTGCTTCCTCCAGGTGAGTCATGAGCCAGCTCGCCGCCGTCGCGCGGCGTCGTCGGAGTGTGGCCGGCCGGCGCTGACGAGGTCCCGTGCGTGCAGGGTGGAGTGAGCAGGAGAGGTACTTCTTCACGTGCAAGGAGGCCAAGTATGTCAAGGGGCGCCGCGCCAACCGCGCCACGGGCGCCGGGTACTGGAAGGCGACGGGGAAGGAGAAGCCGG]




>consensus_5879#0
CGACAAGCTCAGCTCGGCTAGGCCAAGACGGTGGCGAGCGGCGGCGATCTGGTGCTCTGC
TTGGGTTGAGTTCTTGATTTTGCCGAGGTGTATCGATGGAGACGACGGCGGCGAAGAAGC
TGCCGCCGGGGTTCAGGTTCAGGCCCACCGACGAGGAGCTTGTGGTGCACTACCTCCGCC
GCCGCGCGCTCGGCTCCCCTCTCCCGCCCGCCGTCGACATCCCCGATGTCCGCCTCCTCG
CGCATGACCCCTCCGACCTGCTTCCTCCAGGTGAGTCATGAGCCAGCTCGCCGCCGTCGC
GCGGCGTCGTCGGAGTGTGGCCGGCCGGCGCTGACGAGGTCCCGTGCGTGCAGGGTGGAG
TGAGCAGGAGAGGTACTTCTTCACGTGCAAGGAGGCCAAGTATGTCAAGGGGCGCCGCGC
CAACCGCGCCACGGGCGCCGGGTACTGGAAGGCGACGGGGAAGGAGAAGCCGG

consensusID : consensus_5879#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 397
fasta sequence

                              [GCGACAACCTCTGCTCGGCTAGGCCAAGACGGTGGCGAGCGGCGGCGATCTGGTGCTCTGCTTGGGTTGAGTTCTTGATTTTGCCGAGGTGTATCGATGGAGACGACGGCGGCGAACAAGCTGCCGCCGGGGTTCAGGTTCAGGCCCACCGACGAGGAGCTTGTGGTGCACTACCTCCGCCGCCGCGCGCTCGGCTCCCCTCTCCCGCCCGCCGTCGACATCCCCGATGTCCGCCTCCTCGCGCATGACCCCTCCGACCTGCTTCCTCCAGGGTGGAGTGAGCAGGAGAGGTACTTCTTCACGTGCAAGGAGGCCAAGTATGTCAAGGGGCGCCGCGCCAACCGCGCCACGGGCGCCGGGTACTGGAAGGCGACGGGGAAGGAGAAGCCGGTGGCGG]

[+] EMBL CB673580             [GCGACAACCTCTGCTCGGCTAGGCCAAGACGGTGGCGAGCGGCGGCGATCTGGTGCTCTGCTTGGGTTGAGTTCTTGATTTTGCCGAGGTGTATCGATGGAGACGACGGCGGCGAACAAGCTGCCGCCGGGGTTCAGGTTCAGGCCCACCGACGAGGAGCTTGTGGTGCACTACCTCCGCCGCCGCGCGCTCGGCTCCCCTCTCCCGCCCGCCGTCGACATCCCCGATGTCCGCCTCCTCGCGCATGACCCCTCCGACCTGCTTCCTCCAGGGTGGAGTGAGCAGGAGAGGTACTTCTTCACGTGCAAGGAGGCCAAGTATGTCAAGGGGCGCCGCGCCAACCGCGCCACGGGCGCCGGGTACTGGAAGGCGACGGGGAAGGAGAAGCCGGTGGCGG]
[+] EMBL CB664906             [                                             CGATCTGCTGTTCTGCTTGGGTTGAGTTCTTGATTTTGCCGAGGTGTATCGATGGAGACGACGGCGGCGAAGAAGCTGCCGCCGGGGTTCAGGTTCAGGCCCACCGACGAGGAGCTTGTGGTGCACTACCTCCGCCGCCGCGCGCTCGGCTCCCCTCTCCCGCCCGCCGTCGACATCCCCGATGTCCGCCTCCTCGCGCATGACCCCTCCGACCTGCTTCCTCCAGGGTGGAGTGAGCAGGAGAGGTACTTCTTCACGTGCAAGGAGGCCAAGTATGTCAAGGGGCGCCGCGCCAACCGCGCCACGGGCGCCGGGTACTGGAAGGCGACGGGGAAGGAGAAGCCGGTGGC  ]




>consensus_5879#1
GCGACAACCTCTGCTCGGCTAGGCCAAGACGGTGGCGAGCGGCGGCGATCTGGTGCTCTG
CTTGGGTTGAGTTCTTGATTTTGCCGAGGTGTATCGATGGAGACGACGGCGGCGAACAAG
CTGCCGCCGGGGTTCAGGTTCAGGCCCACCGACGAGGAGCTTGTGGTGCACTACCTCCGC
CGCCGCGCGCTCGGCTCCCCTCTCCCGCCCGCCGTCGACATCCCCGATGTCCGCCTCCTC
GCGCATGACCCCTCCGACCTGCTTCCTCCAGGGTGGAGTGAGCAGGAGAGGTACTTCTTC
ACGTGCAAGGAGGCCAAGTATGTCAAGGGGCGCCGCGCCAACCGCGCCACGGGCGCCGGG
TACTGGAAGGCGACGGGGAAGGAGAAGCCGGTGGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5879#0      -CGACAAGCTCAGCTCGGCTAGGCCAAGACGGTGGCGAGCGGCGGCGATCTGGTGCTCTG 59
consensus_5879#1      GCGACAACCTCTGCTCGGCTAGGCCAAGACGGTGGCGAGCGGCGGCGATCTGGTGCTCTG 60
                       ****** *** ************************************************

consensus_5879#0      CTTGGGTTGAGTTCTTGATTTTGCCGAGGTGTATCGATGGAGACGACGGCGGCGAAGAAG 119
consensus_5879#1      CTTGGGTTGAGTTCTTGATTTTGCCGAGGTGTATCGATGGAGACGACGGCGGCGAACAAG 120
                      ******************************************************** ***

consensus_5879#0      CTGCCGCCGGGGTTCAGGTTCAGGCCCACCGACGAGGAGCTTGTGGTGCACTACCTCCGC 179
consensus_5879#1      CTGCCGCCGGGGTTCAGGTTCAGGCCCACCGACGAGGAGCTTGTGGTGCACTACCTCCGC 180
                      ************************************************************

consensus_5879#0      CGCCGCGCGCTCGGCTCCCCTCTCCCGCCCGCCGTCGACATCCCCGATGTCCGCCTCCTC 239
consensus_5879#1      CGCCGCGCGCTCGGCTCCCCTCTCCCGCCCGCCGTCGACATCCCCGATGTCCGCCTCCTC 240
                      ************************************************************

consensus_5879#0      GCGCATGACCCCTCCGACCTGCTTCCTCCAGGTGAGTCATGAGCCAGCTCGCCGCCGTCG 299
consensus_5879#1      GCGCATGACCCCTCCGACCTGCTTCCTCCAGG---------------------------- 272
                      ********************************                            

consensus_5879#0      CGCGGCGTCGTCGGAGTGTGGCCGGCCGGCGCTGACGAGGTCCCGTGCGTGCAGGGTGGA 359
consensus_5879#1      -------------------------------------------------------GTGGA 277
                                                                             *****

consensus_5879#0      GTGAGCAGGAGAGGTACTTCTTCACGTGCAAGGAGGCCAAGTATGTCAAGGGGCGCCGCG 419
consensus_5879#1      GTGAGCAGGAGAGGTACTTCTTCACGTGCAAGGAGGCCAAGTATGTCAAGGGGCGCCGCG 337
                      ************************************************************

consensus_5879#0      CCAACCGCGCCACGGGCGCCGGGTACTGGAAGGCGACGGGGAAGGAGAAGCCGG------ 473
consensus_5879#1      CCAACCGCGCCACGGGCGCCGGGTACTGGAAGGCGACGGGGAAGGAGAAGCCGGTGGCGG 397
                      ******************************************************