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Oryza sativa
cluster # 5882 cluster # 5882       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5882#0 length = 1464 sequences # 3  

consensusID : consensus_5882#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1464
fasta sequence
                              [TGGGAAAAGAAAAAGACCAATAAAGAACCCCATAGCCAAGAACTGAGCCAAAGAACAGCCAAGCCCATGTACGCAGCCAACGAGCACGCCGTTTCCAAGGTCCTGGCCCTCAAACTCAGGCTTCCAGATCGCCTCGTAACCGCCTGATTAATCCTCCGCTCCTGCAAGAACTGCTGTCCCTGGCCTTCACCTCTTCGGTGAATCCCAATTGGGTTCGAGCAACCCAATTGGGAGAACAAAATCGGAATCCACAATACTCAGAGGTTGCCTGCTTCGTTCGTGTTCGTCGATTGGGAAGGGCGAATTTGACTGCCTCGGTTGCAGTCAGGACTCAGGAGTAGAATCATGAAGCTGAAAAATAGAGCTGAAGAAATCTTTAGGGACGGCGACCTGATATTCACATCCGAAAGAAATCTTGGGGCAAGAAACGTGCAAATGGATTATGATATTGTTAGAGCAAATCAGCCAGCTGTTGTTCAGACAAGATGCAGATGGATCATTGGAGATGTAACTGAGGTGCTGGATCGCAACACATGGAAGCTCGGCAAAATCGCAAAGATGCTGAAGAACAACTACTTCGTCATCAGGCTTGCTGACTGCATTCAACTGAAGGAGTTTCACATTTCTAGCTTGAGGGTTCCTGCATCACCTCATAGCAACAACCAGTATTCTGTGGCAGATAAGAAATCTGAAGCTAAGCTTGCGCAGAGAGGCCAGATTCCATCTGATGCTCTGCCTGGAAGAACAAACAAGAAGAGAAAATCAACTGCAGACACATCCTTCAATCCAAGAAGGAGAACATCACGG-CCTGAAAATGCATCCAGGGCCTGTGTGCTCGATGGCTCAACGACTCAAAATCGCTTCCAGTTCATCAGAGAAGAGGCCGAATGTTCAGTGGCCAGCTGCAGCATCAACGACCCGGACACCACCTTCACCAACGCCAAGAAGCTCCAATCTCTCGGCTTCCCTGACGACGCCATGTCCGCGTGCCCATGCACCTCCGGCATGGAGGATGACGATGCCGCCGCCGCCGTCGCCGACGAAGACGATGACGACGAGCCGGCGGCCATTGCCGTCCACGAGCTGGAGCTGGAGGCGTACCAGTCGACGATGCGAGCGCTGTACGCGTCGGGGCCACTGACGTGGGAGCAGGAGTCGCTGCTGACGAATCTTCGACTGTCTCTGAACATCTCCAACGAGGAACACTTGCTGCAGCTCAGGCGTCTCCTGTCCTCGCGATGATTACTTTCGTTTCGTTTCGTTTTCTACTACTGATCAGGCCTTCTCCAGCTTCAGGTTAATTTACTCGAGAGATTAATCAAAAACCTCTTTGTTCGCAACGGCAATGTTGCTGATGCTCTTTGAAAAATTTTTACAAACTTGTAATCTTCTCCCATCTCATGTAGTTCGTGTAGAACTGTGTCACTGTGGAGAGAGTGAGAGATATATACACATAGAAGAACA]

[+] EMBL CB660195             [TGGGAAAAGAAAAAGACCAATAAAGAACCCCATAGCCAAGAACTGAGCCAAAGAACAGCCAAGCCCATGTACGCAGCCAACGAGCACGCCGTTTCCAAGGTCCTGGCCCTCAAACTCAGGCTTCCAGATCGCCTCGTAACCGCCTGATTAATCCTCCGCTCCTGCAAGAACTGCTGTCCCTGGCCTTCACCTCTTCGGTGAATCCCAATTGGGTTCGAGCAACCCAATTGGGAGAACAAAATCGGAATCCACAATACTCAGAGGTTGCCTGCTTCGTTCGTGTTCGTCGATTGGGAAGGGCGAATTTGACTGCCTCGGTTGCAGTCAGGACTCAGGAGTAGAATCATGAAGCTGAAAAATAGAGCTGAAGAAATCTTTAGGGACGGCGACCTGATATTCACATCCGAAAGAAATCTTGGGGCAAGAAACGTGCAAATGGATTATGATATTGTTAGAGCAAATCAGCCAGCTGTTGTTCAGACAAGATGCAGATGGATCATTGGAGATGTAACTGAGGTGCTGGATCGCAACACATGGAAGCTCGGCAAAATCGCAAAGATGCTGAAGAACAACTACTTCGTCATCAGGCTTGCTGACTGCATTCAACTGAAGGAGTTTCACATTTCTAGCTTGAGGGTTCCTGCATCACCTCATAGCAACAACCAGTATTCTGTGGCAGATAAGAAATCTGAAGCTAAGCTTGCGCAGAGAGGCCAGATTCCATCTGATGCTCTGCCTGGAAGAACAAACAAGAAGAGAAAATCAACTGCAGACACATCCTTCAATCCAAGAAGGAGAACATCACGGCCCTG AAATGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK109800             [                                  GCCAAGAACTGAGCCAAAGAACAGCCAAGCCCATGTACGCAGCCAACGAGCACGCCGTTTCCAAGGTCCTGGCCCTCAAACTCAGGCTTCCAGATCGCCTCGTAACCGCCTGATTAATCCTCCGCTCCTGCAAGAACTGCTGTCCCTGGCCTTCACCTCTTCGGTGAATCCCAATTGGGTTCGAGCAACCCAATTGGGAGAACAAAATCGGAATCCACAATACTCAGAGGTTGCCTGCTTCGTTCGTGTTCGTCGATTGGGAAGGGCGAATTTGACTGCCTCGGTTGCAGTCAGGACTCAGGAGTAGAATCATGAAGCTGAAAAATAGAGCTGAAGAAATCTTTAGGGACGGCGACCTGATATTCACATCCGAAAGAAATCTTGGGGCAAGAAACGTGCAAATGGATTATGATATTGTTAGAGCAAATCAGCCAGCTGTTGTTCAGACAAGATGCAGATGGATCATTGGAGATGTAACTGAGGTGCTGGATCGCAACACATGGAAGCTCGGCAAAATCGCAAAGATGCTGAAGAACAACTACTTCGTCATCAGGCTTGCTGACTGCATTCAACTGAAGGAGTTTCACATTTCTAGCTTGAGGGTTCCTGCATCACCTCATAGCAACAACCAGTATTCTGTGGCAGATAAGAAATCTGAAGCTAAGCTTGCGCAGAGAGGCCAGATTCCATCTGATGCTCTGCCTGGAAGAACAAACAAGAAGAGAAAATCAACTGCAGACACATCCTTCAATCCAAGAAGGAGAACATCACGG CCTGAAAATGCATCCAGGGCCTGTGTGCTCGATGGCTCAACGACTCAAAATCGCTTCCAGTTCATCAGAGAAGAGGCCGAATGTTCAGTGGCCAGCTGCAGCATCAACGACCCGGACACCACCTTCACCAACGCCAAGAAGCTCCAATCTCTCGGCTTCCCTGACGACGCCATGTCCGCGTGCCCATGCACCTCCGGCATGGAGGATGACGATGCCGCCGCCGCCGTCGCCGACGAAGACGATGACGACGAGCCGGCGGCCATTGCCGTCCACGAGCTGGAGCTGGAGGCGTACCAGTCGACGATGCGAGCGCTGTACGCGTCGGGGCCACTGACGTGGGAGCAGGAGTCGCTGCTGACGAATCTTCGACTGTCTCTGAACATCTCCAACGAGGAACACTTGCTGCAGCTCAGGCGTCTCCTGTCCTCGCGATGATTACTTTCGTTTCGTTTCGTTTTCTACTACTGATCAGGCCTTCTCCAGCTTCAGGTTAATTTACTCGAGAGATTAATCAAAAACCTCTTTGTTCGCAACGGCAATGTTGCTGATGCTCTTTGAAAAATTTTTACAAACTTGTAATCTTCTCCCATCTCATGTAGTTCGTGTAGAACTGTGTCACTGTGGAGAGAGTGAGAGATATATACACATAGAAGAACA]
[-] EMBL CB660196             [                                                                                                                                                                                                                                                                                                                                                                                                                                                            GATATTGTTAGAGCAAATCAGCCAGCTGTTGTTCAGACAAGATGCAGATGGATCATTGGAGATGTAACTGAGGTGCTGGATCGCAACACATGGAAGCTCGGCAAAATCGCAAAGATGCTGAAGAACAACTACTTCGTCATCAGGCTTGCTGACTGCATTCAACTGAAGGAGTTTCACATTTCTAGCTTGAGGGTTCCTGCATCACCTCATAGCAACAACCAGTATTCTGTGGCAGATAAGAAATCTGAAGCTAAGCTTGCGCAGAGAGGCCAGATTCCATCTGATGCTCTGCCTGGAAGAACAAACAAGAAGAGAAAATCAACTGCAGACACATCCTTCAATCCAAGAAGGAGAACATCACGG CCTGAAAATGCATCCAGGGCCTGTGTGCTCGATGGCTCAACGACTCAAAATCGCTTCCAGTTCATCAGAGAAGAGGCCGAATGTTCAGTGGCCAGCTGCAGCATCAACGACCCGGACACCACCTTCACCAACGCCAAGAAGCTCCAATCTCTCGGCTTCCCTGACGACGCCATGTCCGCGTGCCCATGCACCTCCGGCATGGAGGATGACGATGCCGCCGCCGCCGCCGCCGACGAAGACGATGACGACGAGCCGGCGGCCATTGCCGTCCACGAGCTGGAGCTGGAGGCGTACCAGTCGACGATGCGAGCGCTGTACGCGTCGGGGCCACTGACGTGGGAGCAGGAGTCGCTGCTGACGAATCTTCGACTGTCTCTGAACATCTCCAACGAGGAACACTTGCTGCAGCTCAGGCGTCTCCTGTCCTCGCGATGATTACTTTGGTTTCGTATGGTTTTCTACTACTGATCAGGCCTTCTCC                                                                                                                                                                                ]


>consensus_5882#0 TGGGAAAAGAAAAAGACCAATAAAGAACCCCATAGCCAAGAACTGAGCCAAAGAACAGCC AAGCCCATGTACGCAGCCAACGAGCACGCCGTTTCCAAGGTCCTGGCCCTCAAACTCAGG CTTCCAGATCGCCTCGTAACCGCCTGATTAATCCTCCGCTCCTGCAAGAACTGCTGTCCC TGGCCTTCACCTCTTCGGTGAATCCCAATTGGGTTCGAGCAACCCAATTGGGAGAACAAA ATCGGAATCCACAATACTCAGAGGTTGCCTGCTTCGTTCGTGTTCGTCGATTGGGAAGGG CGAATTTGACTGCCTCGGTTGCAGTCAGGACTCAGGAGTAGAATCATGAAGCTGAAAAAT AGAGCTGAAGAAATCTTTAGGGACGGCGACCTGATATTCACATCCGAAAGAAATCTTGGG GCAAGAAACGTGCAAATGGATTATGATATTGTTAGAGCAAATCAGCCAGCTGTTGTTCAG ACAAGATGCAGATGGATCATTGGAGATGTAACTGAGGTGCTGGATCGCAACACATGGAAG CTCGGCAAAATCGCAAAGATGCTGAAGAACAACTACTTCGTCATCAGGCTTGCTGACTGC ATTCAACTGAAGGAGTTTCACATTTCTAGCTTGAGGGTTCCTGCATCACCTCATAGCAAC AACCAGTATTCTGTGGCAGATAAGAAATCTGAAGCTAAGCTTGCGCAGAGAGGCCAGATT CCATCTGATGCTCTGCCTGGAAGAACAAACAAGAAGAGAAAATCAACTGCAGACACATCC TTCAATCCAAGAAGGAGAACATCACGGCCTGAAAATGCATCCAGGGCCTGTGTGCTCGAT GGCTCAACGACTCAAAATCGCTTCCAGTTCATCAGAGAAGAGGCCGAATGTTCAGTGGCC AGCTGCAGCATCAACGACCCGGACACCACCTTCACCAACGCCAAGAAGCTCCAATCTCTC GGCTTCCCTGACGACGCCATGTCCGCGTGCCCATGCACCTCCGGCATGGAGGATGACGAT GCCGCCGCCGCCGTCGCCGACGAAGACGATGACGACGAGCCGGCGGCCATTGCCGTCCAC GAGCTGGAGCTGGAGGCGTACCAGTCGACGATGCGAGCGCTGTACGCGTCGGGGCCACTG ACGTGGGAGCAGGAGTCGCTGCTGACGAATCTTCGACTGTCTCTGAACATCTCCAACGAG GAACACTTGCTGCAGCTCAGGCGTCTCCTGTCCTCGCGATGATTACTTTCGTTTCGTTTC GTTTTCTACTACTGATCAGGCCTTCTCCAGCTTCAGGTTAATTTACTCGAGAGATTAATC AAAAACCTCTTTGTTCGCAACGGCAATGTTGCTGATGCTCTTTGAAAAATTTTTACAAAC TTGTAATCTTCTCCCATCTCATGTAGTTCGTGTAGAACTGTGTCACTGTGGAGAGAGTGA GAGATATATACACATAGAAGAACA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)