cluster # 5896

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Oryza sativa
cluster # 5896 cluster # 5896 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5896#0 length = 533 sequences # 3

consensusID : consensus_5896#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 533
fasta sequence

                              [CCCTCCGCGGCAACCCCCCCGCGCTCCGCCACAGAAGCCGACGCCGACGCCGCGCGCGTACATGCCGCCGCTCCACGCCGTCTCCCCCGCGGCGGCGGCCGCCCCGCCGCGCGCGCTCTCCTCCGCCGCGCGCGTCCCGCAGCGCCCAGGTTGTGTTCCAGAACGCCCAAACATTTTAAGCTCCTCCACAAACTTCATGAGTCTCCGTGCTGGACCAATGCGCTTCTATAGCAGGCCTCTTATTCTTCAAAACTCGGACAAGAGAGCAGTATTGAGGCATGCCACTATTGAAGAAATTGAGGCAGAAAAATCTGTCATTGAAGACCAAGCTAGAGAAAGGATGGAAAAGGCAATTGAAACAGTCCAAAATAACTTCAATACTGTGAGGACAGGGCGGGCAAACCCAGCTATGCTTGACAGGATTGAGGTTGAGTATTATGGAACTCCAGTGAACTTGAAGAGCATCGCACAGATAAACACTCCAGATGCAACTTCTCTCCTTATTCAGCCATATGACAAATCCTCCCTCAAGC]

[+] EMBL CB658547             [CCCTCCGCGGCAACCCCCCCGCGCTCCGCCACAGAAGCCGACGCCGACGCCGCGCGCGTACATGCCGCCGCTCCACGCCGTCTCCCCCGCGGCGGCGGCCGCCCCGCCGCGCGCGCTCTCCTCCGCCGCGCGCGTCCCGCAGCGCCCAGGTTGTGTTCCAGAACGCCCAAACATTTTAAGCTCCTCCACAAACTTCATGAGTCTCCGTGCTGGACCAATGCGCTTCTATAGCAGGCCTCTTATTCTTCAAAACTCGGACAAGAGAGCAGTATTGAGGCATGCCACTATTGAAGAAATTGAGGCAGAAAAATCTGTCATTGAAGACCAAGCTAGAGAAAGGATGGAAAAGGCAATTGAAACAGTCCAAAATAACTTCAATACTGTGAGGACAGGGCGGGCAAACCCAGCTATGCTTGACAGGATTGAGGTTGAGTATTATGGAACTCCAGTGAACTTGAAGAGCATCGCACAGATAAACACTCCAGATGCAACTTCTCTCCTTATTCAGCCATATGACAAATCCTCCCTCAAG ]
[+] EMBL CB632283             [               CCCCCTCGCTCCGCCACAGAAGCCGACGCCGACGCCGCGCGCGTACATGCCGCCGCTCCACGCCGTCTCCCCCGCGGCGGCGGCCGCCCCGCCGCGCGCGCTCTCCTCCGCCGCGCGCGTCCCGCAGCGCCCAGGTTGTGTTCCAGAACGCCCAAACATTTTAAGCTCCTCCACAAACTTCATGAGTCTCCGTGCTGGACCAATGCGCTTCTATAGCAGGCCTCTTATTCTTCAAAACTCGGACAAG     AGTATTGAGGCATGCCACTATTGAAGAAATTGAGGCAGAAAAATCTGTCATTGAAGACCAAGCTAGAGAAAGGATGGAAAAGGCAATTGAAACAGTCCAAAATAACTTCAATACTGTGAGGACAGGGCGGGCAAACCCAGCTATGCTTGACAGGATTGAGGTTGAGTATTATGGAACTCCAGTGAACTTGAAGAGCATCGCACAGATAAACACTCCAGATGCAACTTCTCTCCTTATTCAGCCATATGACAAATCCTCCCTCAAG ]
[-] EMBL CB658548             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TCCAGATGCAACTTCTCTCCTTATTCAGCCATATGACAAATCCTCCCTCAAGC]




>consensus_5896#0
CCCTCCGCGGCAACCCCCCCGCGCTCCGCCACAGAAGCCGACGCCGACGCCGCGCGCGTA
CATGCCGCCGCTCCACGCCGTCTCCCCCGCGGCGGCGGCCGCCCCGCCGCGCGCGCTCTC
CTCCGCCGCGCGCGTCCCGCAGCGCCCAGGTTGTGTTCCAGAACGCCCAAACATTTTAAG
CTCCTCCACAAACTTCATGAGTCTCCGTGCTGGACCAATGCGCTTCTATAGCAGGCCTCT
TATTCTTCAAAACTCGGACAAGAGAGCAGTATTGAGGCATGCCACTATTGAAGAAATTGA
GGCAGAAAAATCTGTCATTGAAGACCAAGCTAGAGAAAGGATGGAAAAGGCAATTGAAAC
AGTCCAAAATAACTTCAATACTGTGAGGACAGGGCGGGCAAACCCAGCTATGCTTGACAG
GATTGAGGTTGAGTATTATGGAACTCCAGTGAACTTGAAGAGCATCGCACAGATAAACAC
TCCAGATGCAACTTCTCTCCTTATTCAGCCATATGACAAATCCTCCCTCAAGC

clustalw multiple alignements is not computed in this case