These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5898#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1242 fasta sequence [AAGTTAATCTTGAACGTTGAGTGCCACAGGCCCAGGAATAAGATTGAAAGGTCCGATTTCCTGGTACAGGAACAGGAAGATCAAGGTGGTAACCAGACTATAAGAATGCAACCTCAACAAGGTAGATTTTTTGGAAGAGAGGAAATGAGCAATGGAGTAGAATACGATGCTGCATATGCAGCCACAGTGGCTGCGGTAGCGTATGCTATTGCAGCAAAAGAGGAGGAGAAACAGGCAACAGAAGAGACCCGTGTGAAAAAGAAGTTAACATCTGAAAAGAAGCCTGTCGCGAACGATGAGCCTTCGACCACACCAACTCTCAAACTACCACCCAACAGACAAGGAATCTTGAAAAGGCCTAGGCAAACCGAGGGGAGCAGAATCACAAGGCGGTTTAGTGGTAAGGAGATTGTACCCGATGAAGAAGACGACGGACTAGAAGCTAATGTATCGGTGAGGAGGCCGGTGAGAACGGCACAAAAGATACCAGAAGGTGGAATTTCAGGTCAAAATATGGTAGGGAAGGTTCTTGATTCTGTCCCAAGCATAAGAAAGGCTCCGAGCTTCGCCAAGCCTTTACCAGAAAAGAAGGGGAGCATGAAATTTGAGCAAGAGCAGGCAATCCCAACGGTGCCACCGAATGTTAGGCCGACAGCTTTATTTCCCCGAGAGAAGAAAGAGAGCAAGAAATTTGATCAAGACCAGGCAATCCCAAGGGTGCCACCAGATGTTAGGCCAACAGCTTCATTTTCCCGAGAGAAGAAAGAGAGCAAGAAGTTTGAGCAAGACAAGGCAAATCAAATGCCATCTTTGGCTTCCGCGCCGACGAGTTCATATTCTAGTGAGGCTGAAGCAATGGCAGATACGTGGGAGAAGGAAAAGATGGCAAAAATCAAGAAGCAGTACAACATGACAATGGATACCATCGTCGAATGGGAGGCCGAGAAGAAGGCCAAGGCCAAACGCCAGATGGAGTTGAAAGAGGGCGATAATTCAGAGCGGAAGCGAGAGAAGGCGCTGGAGGAGTACAACGACGAGATTACAAGGATCAACAAGGTGGCCGCAGCATCAAGGCTGACGGCGGAGGAGAAGCGGAGGAGCGCAGAGAGGAAGGTGAGGGAGAAGGCAGAGAGGATTCGGGTGACGGGAAAGCTTCCCGGCGCATGTGGCTGCTTCTGAAAACCATCAATGTGTCAATGTGTAGTGGATGTGGCTGTTTCAAATGAAATTTATGTGAAATTG] [+] EMBL AK060392 [AAGTTAATCTTGAACGTTGAGTGCCACAGGCCCAGGAATAAGATTGAAAGGTCCGATTTCCTGGTACAGGAACAGGAAGATCAAGGTGGTAACCAGACTATAAGAATGCAACCTCAACAAGGTAGATTTTTTGGAAGAGAGGAAATGAGCAATGGAGTAGAATACGATGCTGCATATGCAGCCACAGTGGCTGCGGTAGCGTATGCTATTGCAGCAAAAGAGGAGGAGAAACAGGCAACAGAAGAGACCCGTGTGAAAAAGAAGTTAACATCTGAAAAGAAGCCTGTCGCGAACGATGAGCCTTCGACCACACCAACTCTCAAACTACCACCCAACAGACAAGGAATCTTGAAAAGGCCTAGGCAAACCGAGGGGAGCAGAATCACAAGGCGGTTTAGTGGTAAGGAGATTGTACCCGATGAAGAAGACGACGGACTAGAAGCTAATGTATCGGTGAGGAGGCCGGTGAGAACGGCACAAAAGATACCAGAAGGTGGAATTTCAGGTCAAAATATGGTAGGGAAGGTTCTTGATTCTGTCCCAAGCATAAGAAAGGCTCCGAGCTTCGCCAAGCCTTTACCAGAAAAGAAGGGGAGCATGAAATTTGAGCAAGAGCAGGCAATCCCAACGGTGCCACCGAATGTTAGGCCGACAGCTTTATTTCCCCGAGAGAAGAAAGAGAGCAAGAAATTTGATCAAGACCAGGCAATCCCAAGGGTGCCACCAGATGTTAGGCCAACAGCTTCATTTTCCCGAGAGAAGAAAGAGAGCAAGAAGTTTGAGCAAGACAAGGCAAATCAAATGCCATCTTTGGCTTCCGCGCCGACGAGTTCATATTCTAGTGAGGCTGAAGCAATGGCAGATACGTGGGAGAAGGAAAAGATGGCAAAAATCAAGAAGCAGTACAACATGACAATGGATACCATCGTCGAATGGGAGGCCGAGAAGAAGGCCAAGGCCAAACGCCAGATGGAGTTGAAAGAGGGCGATAATTCAGAGCGGAAGCGAGAGAAGGCGCTGGAGGAGTACAACGACGAGATTACAAGGATCAACAAGGTGGCCGCAGCATCAAGGCTGACGGCGGAGGAGAAGCGGAGGAGCGCAGAGAGGAAGGTGAGGGAGAAGGCAGAGAGGATTCGGGTGACGGGAAAGCTTCCCGGCGCATGTGGCTGCTTCTGAAAACCATCAATGTGTCAATGTGTAGTGGATGTGGCTGTTTCAAATGAAATTTATGTGAAATTG] consensusID : consensus_5898#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 563 fasta sequence [GTACCCGATGAAGAAGACGACGGACTAGAAGGTACAAGATTCAAAACAACTTACTTGGGCAACAATGATATATTACTGTAGCACAACCTGCAACCAGCTATACCATTATGTACTAAAAAACTTTTGTTGAATTTTAGCTAATGTATCGGTGAGGAGGCCGGTGAGAACGGCACAAAAGATACCAGAAGGTGGAATTTCAGGTCAAAATATGGTAGGGAAGGTTCTTGATTCTGTCCCAAGCATAAGAAAGGCTCCGAGCTTCGCCAAGCCTTTACCAGAAAAGAAGGGGAGCATGAAATTTGAGCAAGAGCAGGCAATCCCAACGGTGCCACCGAATGTTAGGCCGACAGCTTTATTTCCCCGAGAGAAGAAAGAGAGCAAGAAATTTGATCAAGACCAGGCAATCCCAAGGGTGCCACCAGATGTTAGGCCAACAGCTTCATTTTCCCGAGAGAAGAAAGAGAGCAAGAAGTTTGAGCAAGACAAGGCAAATCAAATGCCATCTTTGGCTTCCGCGCCGACGAGTTCATATTCTAGTGAGGCTGAAGCAATGGCAGATACGT] [-] EMBL CF303399 [GTACCCGATGAAGAAGACGACGGACTAGAAGGTACAAGATTCAAAACAACTTACTTGGGCAACAATGATATATTACTGTAGCACAACCTGCAACCAGCTATACCATTATGTACTAAAAAACTTTTGTTGAATTTTAGCTAATGTATCGGTGAGGAGGCCGGTGAGAACGGCACAAAAGATACCAGAAGGTGGAATTTCAGGTCAAAATATGGTAGGGAAGGTTCTTGATTCTGTCCCAAGCATAAGAAAGGCTCCGAGCTTCGCCAAGCCTTTACCAGAAAAGAAGGGGAGCATGAAATTTGAGCAAGAGCAGGCAATCCCAACGGTGCCACCGAATGTTAGGCCGACAGCTTTATTTCCCCGAGAGAAGAAAGAGAGCAAGAAATTTGATCAAGACCAGGCAATCCCAAGGGTGCCACCAGATGTTAGGCCAACAGCTTCATTTTCCCGAGAGAAGAAAGAGAGCAAGAAGTTTGAGCAAGACAAGGCAAATCAAATGCCATCTTTGGCTTCCGCGCCGACGAGTTCATATTCTAGTGAGGCTGAAGCAATGGCAGATACGT] [-] EMBL CF304852 [ TACTAAAAAACTTTTGTTGAATTTTAGCTAATGTATCGGTGAGGAGGCCGGTGAGAACGGCACAAAAGATACCAGAAGGTGGAATTTCAGGTCAAAATATGGTAGGGAAGGTTCTTGATTCTGTCCCAAGCATAAGAAAGGCTCCGAGCTTCGCCAAGCCTTTACCAGAAAAGAAGGGGAGCATGAAATTTGAGCAAGAGCAGGCAATCCCAACGGTGCCACCGAATGTTAGGCCGACAGCTTTATTTCCCCGAGAGAAGAAAGAGAGCAAGAAATTTGATCAAGACCAGGCAATCCCAAGGGTGCCACCAGATGTTAGGCCAACAGCTTCATTTTCCCGAGAGAAGAAAGAGAGCAAGAAGTTTGAGCAAGACAAGGCAAATCAAATGCCATCTTTGGCTTCCGCGCCGACGAGTTCATATTCTAGTGAGGCTGAAGCAATGGCAGATACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5898#0 AAGTTAATCTTGAACGTTGAGTGCCACAGGCCCAGGAATAAGATTGAAAGGTCCGATTTC 60 consensus_5898#1 ------------------------------------------------------------ consensus_5898#0 CTGGTACAGGAACAGGAAGATCAAGGTGGTAACCAGACTATAAGAATGCAACCTCAACAA 120 consensus_5898#1 ------------------------------------------------------------ consensus_5898#0 GGTAGATTTTTTGGAAGAGAGGAAATGAGCAATGGAGTAGAATACGATGCTGCATATGCA 180 consensus_5898#1 ------------------------------------------------------------ consensus_5898#0 GCCACAGTGGCTGCGGTAGCGTATGCTATTGCAGCAAAAGAGGAGGAGAAACAGGCAACA 240 consensus_5898#1 ------------------------------------------------------------ consensus_5898#0 GAAGAGACCCGTGTGAAAAAGAAGTTAACATCTGAAAAGAAGCCTGTCGCGAACGATGAG 300 consensus_5898#1 ------------------------------------------------------------ consensus_5898#0 CCTTCGACCACACCAACTCTCAAACTACCACCCAACAGACAAGGAATCTTGAAAAG---G 357 consensus_5898#1 -------GTACCCGATGAAGAAGACGACGGACTAGAAGGTACAAGATTCAAAACAACTTA 53 ** * * * ** ** * * ** * ** ** * consensus_5898#0 CCTAGGCAAACCGAGGGGAGCAGAATCACAAGGCGGTTTAGTGGTAAGGAGATTGTACCC 417 consensus_5898#1 CTTGGGCAACAATGATATATTACTGTAGCACAACCTGCAACCAGCTATACCATTATGTAC 113 * * ***** * * * ** * * * * *** * * consensus_5898#0 GATGAAGAAGACGACGGACTAGAAGCTAATGTATCGGTGAGGAGGCCGGTGAGAACGGCA 477 consensus_5898#1 TAAAAAACTTTTGTTGAATTTTA-GCTAATGTATCGGTGAGGAGGCCGGTGAGAACGGCA 172 * ** * * * * * ************************************ consensus_5898#0 CAAAAGATACCAGAAGGTGGAATTTCAGGTCAAAATATGGTAGGGAAGGTTCTTGATTCT 537 consensus_5898#1 CAAAAGATACCAGAAGGTGGAATTTCAGGTCAAAATATGGTAGGGAAGGTTCTTGATTCT 232 ************************************************************ consensus_5898#0 GTCCCAAGCATAAGAAAGGCTCCGAGCTTCGCCAAGCCTTTACCAGAAAAGAAGGGGAGC 597 consensus_5898#1 GTCCCAAGCATAAGAAAGGCTCCGAGCTTCGCCAAGCCTTTACCAGAAAAGAAGGGGAGC 292 ************************************************************ consensus_5898#0 ATGAAATTTGAGCAAGAGCAGGCAATCCCAACGGTGCCACCGAATGTTAGGCCGACAGCT 657 consensus_5898#1 ATGAAATTTGAGCAAGAGCAGGCAATCCCAACGGTGCCACCGAATGTTAGGCCGACAGCT 352 ************************************************************ consensus_5898#0 TTATTTCCCCGAGAGAAGAAAGAGAGCAAGAAATTTGATCAAGACCAGGCAATCCCAAGG 717 consensus_5898#1 TTATTTCCCCGAGAGAAGAAAGAGAGCAAGAAATTTGATCAAGACCAGGCAATCCCAAGG 412 ************************************************************ consensus_5898#0 GTGCCACCAGATGTTAGGCCAACAGCTTCATTTTCCCGAGAGAAGAAAGAGAGCAAGAAG 777 consensus_5898#1 GTGCCACCAGATGTTAGGCCAACAGCTTCATTTTCCCGAGAGAAGAAAGAGAGCAAGAAG 472 ************************************************************ consensus_5898#0 TTTGAGCAAGACAAGGCAAATCAAATGCCATCTTTGGCTTCCGCGCCGACGAGTTCATAT 837 consensus_5898#1 TTTGAGCAAGACAAGGCAAATCAAATGCCATCTTTGGCTTCCGCGCCGACGAGTTCATAT 532 ************************************************************ consensus_5898#0 TCTAGTGAGGCTGAAGCAATGGCAGATACGTGGGAGAAGGAAAAGATGGCAAAAATCAAG 897 consensus_5898#1 TCTAGTGAGGCTGAAGCAATGGCAGATACGT----------------------------- 563 ******************************* consensus_5898#0 AAGCAGTACAACATGACAATGGATACCATCGTCGAATGGGAGGCCGAGAAGAAGGCCAAG 957 consensus_5898#1 ------------------------------------------------------------ consensus_5898#0 GCCAAACGCCAGATGGAGTTGAAAGAGGGCGATAATTCAGAGCGGAAGCGAGAGAAGGCG 1017 consensus_5898#1 ------------------------------------------------------------ consensus_5898#0 CTGGAGGAGTACAACGACGAGATTACAAGGATCAACAAGGTGGCCGCAGCATCAAGGCTG 1077 consensus_5898#1 ------------------------------------------------------------ consensus_5898#0 ACGGCGGAGGAGAAGCGGAGGAGCGCAGAGAGGAAGGTGAGGGAGAAGGCAGAGAGGATT 1137 consensus_5898#1 ------------------------------------------------------------ consensus_5898#0 CGGGTGACGGGAAAGCTTCCCGGCGCATGTGGCTGCTTCTGAAAACCATCAATGTGTCAA 1197 consensus_5898#1 ------------------------------------------------------------ consensus_5898#0 TGTGTAGTGGATGTGGCTGTTTCAAATGAAATTTATGTGAAATTG 1242 consensus_5898#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||