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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5905#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2155 fasta sequence
[ACATGGGAGAGACGGCAGAAGGTGTTGAAGCAGGCGAGAAATATGTGAGCATACCACAGTTGGCTGGAGTTGGAACTCTTCTCTCCAATGGAGGAAAGGTGAGACTGATCATAGTATTTGATAGCCCTGATCTTCAGCTTAGCTTGTGTTCTGTTGTTCTGAATAAATATTCTCTAATTTTCTTGTGGATATACTATTTGGCATCCAAGCATGATTTAAATATAGCAAATAAACATCAATACATAGAAGTACTCCAGGGATTGGCTGTTCTGTTTCATGATCAAATCTGAGATCTCTGCTTAAGTATAAAACTGCTAACATGGCATAGTTTTTCCAAATTAGTATCAGTATTAAAACTTCACACTATGCAGTACTGCAAAAATATGTTTGCTTTTGGTTTCAGAAAGAGAAGAATTAGTTGTCTCCTAAATTTGTCATTGTGTATCAAAAACAGGAAATACCTCTGTCGTCCATTGAAGGGAAGAGAATCTGCCTCTTCTTCTCGGCTCACTGGTGCAGGCCATGCAGGAACTTTACCCCAAAGTTGCTCCAAATCTACAGGAAACTCAGGAATACTTGCAAGAATATGGAGATAATCTTCATATCACTTGACCGCGACGAGATCAGCTTCTTGGACTACTTCAAAGGCATGCCATGGCTTGCCTTGCCTTTTGACACTGGCCTAAGGCAAAAATTATGTGTGCAATTTGACATTGAGCATATCCCAGCATTGATTCCTCTGTCAACAACGCTATCTCATGGATTTCGAGTCGAAGAGGATGCAGTGAAGCTGGTTGAGGAGTATGGAGTAGATGCCTACCCCTTTGGTGCAAAGAGGAGAAGTGAACTGGAGGGTATGGATGATGCCAGGAGACAAGGAGGTAATCTTCTGCAACTTCTTGGATGCAAGGAAAGAGAATATGTCATAAGTGCAGATGGCATAAAGGTGACCAAAATCATAACCTATAAATTCGTAATTTGCTTGTTTATGCATTGCGTATGTTTAGGTAAAATATAAGGCTAGATGATGCAGACTTGATAGATGGTGCCAGTATATAGATACATGCTATGACAGTAACCTGCTAGCAAGAACCCCAACAGATTGCACTAATACAAGCTAATATATGAGCACAGTCATCAAAATCTTAATGATTGTATAACCATTAAACTGAGTAAACTGGCAATGCTAGATTAATAATAGTAATCTAGTCACAAAACAATGAAACCAACAAAATATGAATTAGGTGAAGCTTTATGAAGCTACATGAGATAAAAAATAAAGGAATATAGCTACAGGTGCAGCACAACAGTTTTTTTGGATACTATGATCCTTGAAAGGAAGCATGGACCAACAAACTTAATGTGTAACATGCACAAGCGGAAATTGCTTTGAATTCCTCATCCCCATCAGGTACAATTGGCTTTGCTTTACCATTTCACCTTCTATTATAACTCTTTCAGACTCCTATATCTGACCTTAATGGCAAGACAATTGGACTGTACTTTGGAGCACACTGGTGCCCACCTTGCCGTGCCTTCACTAAACAACTCAGGGAGGCGTACGATGAGCTGAAAGCCTTGAGACCTGGGAATTTCCAGGTCATATTCATTTCCATGGACCGCAATGAGGAAGAATTCCAAGCAAGCCTGAGTGCAATGCCATGGTTTGCTATCCCCTATTCTGACACAACTGTGCAAGAACTCAGTAGAATCTTCACTATCAAAGGCATCCCAACACTCTTGATACTTGGACCAGATGGTAAAGTGTTCAAAACAGACGGAAGGAGAATAATTTCAAAATATGGTGCAATGGCATTCCCTTTTACAGAATCAAGAGCTTATGAGTTGGAAGAAGTTCTCAAAAAGGAAAGGGACAGCCTGCCTCACCGAGTGAGAGATCACCGTCATGAGCATGAGCTTGAGTTGGACATGGCTAAGGCTTATGTATGCGATGAGTGCCAACAGAAAGGGCAAAACTGGGTCTTCTCTTGCAAGCAGTGCAACTTCGATCTCCATCCAACCTGTGCGCAAGAAAGTACTGATGTAAACATCTGAGATATTTATACTTCAAATATACTGACAACAATGATGTATGCGTTTATGTATATTGTGTCCAACAGATCTAGTGCTAATGTGGCACTGGAAAAAAAAAACT]
[+] EMBL AK067687 [ACATGGGAGAGACGGCAGAAGGTGTTGAAGCAGGCGAGAAATATGTGAGCATACCACAGTTGGCTGGAGTTGGAACTCTTCTCTCCAATGGAGGAAAGGTGAGACTGATCATAGTATTTGATAGCCCTGATCTTCAGCTTAGCTTGTGTTCTGTTGTTCTGAATAAATATTCTCTAATTTTCTTGTGGATATACTATTTGGCATCCAAGCATGATTTAAATATAGCAAATAAACATCAATACATAGAAGTACTCCAGGGATTGGCTGTTCTGTTTCATGATCAAATCTGAGATCTCTGCTTAAGTATAAAACTGCTAACATGGCATAGTTTTTCCAAATTAGTATCAGTATTAAAACTTCACACTATGCAGTACTGCAAAAATATGTTTGCTTTTGGTTTCAGAAAGAGAAGAATTAGTTGTCTCCTAAATTTGTCATTGTGTATCAAAAACAGGAAATACCTCTGTCGTCCATTGAAGGGAAGAGAATCTGCCTCTTCTTCTCGGCTCACTGGTGCAGGCCATGCAGGAACTTTACCCCAAAGTTGCTCCAAATCTACAGGAAACTCAGGAATACTTGCAAGAATATGGAGATAATCTTCATATCACTTGACCGCGACGAGATCAGCTTCTTGGACTACTTCAAAGGCATGCCATGGCTTGCCTTGCCTTTTGACACTGGCCTAAGGCAAAAATTATGTGTGCAATTTGACATTGAGCATATCCCAGCATTGATTCCTCTGTCAACAACGCTATCTCATGGATTTCGAGTCGAAGAGGATGCAGTGAAGCTGGTTGAGGAGTATGGAGTAGATGCCTACCCCTTTGGTGCAAAGAGGAGAAGTGAACTGGAGGGTATGGATGATGCCAGGAGACAAGGAGGTAATCTTCTGCAACTTCTTGGATGCAAGGAAAGAGAATATGTCATAAGTGCAGATGGCATAAAGGTGACCAAAATCATAACCTATAAATTCGTAATTTGCTTGTTTATGCATTGCGTATGTTTAGGTAAAATATAAGGCTAGATGATGCAGACTTGATAGATGGTGCCAGTATATAGATACATGCTATGACAGTAACCTGCTAGCAAGAACCCCAACAGATTGCACTAATACAAGCTAATATATGAGCACAGTCATCAAAATCTTAATGATTGTATAACCATTAAACTGAGTAAACTGGCAATGCTAGATTAATAATAGTAATCTAGTCACAAAACAATGAAACCAACAAAATATGAATTAGGTGAAGCTTTATGAAGCTACATGAGATAAAAAATAAAGGAATATAGCTACAGGTGCAGCACAACAGTTTTTTTGGATACTATGATCCTTGAAAGGAAGCATGGACCAACAAACTTAATGTGTAACATGCACAAGCGGAAATTGCTTTGAATTCCTCATCCCCATCAGGTACAATTGGCTTTGCTTTACCATTTCACCTTCTATTATAACTCTTTCAGACTCCTATATCTGACCTTAATGGCAAGACAATTGGACTGTACTTTGGAGCACACTGGTGCCCACCTTGCCGTGCCTTCACTAAACAACTCAGGGAGGCGTACGATGAGCTGAAAGCCTTGAGACCTGGGAATTTCCAGGTCATATTCATTTCCATGGACCGCAATGAGGAAGAATTCCAAGCAAGCCTGAGTGCAATGCCATGGTTTGCTATCCCCTATTCTGACACAACTGTGCAAGAACTCAGTAGAATCTTCACTATCAAAGGCATCCCAACACTCTTGATACTTGGACCAGATGGTAAAGTGTTCAAAACAGACGGAAGGAGAATAATTTCAAAATATGGTGCAATGGCATTCCCTTTTACAGAATCAAGAGCTTATGAGTTGGAAGAAGTTCTCAAAAAGGAAAGGGACAGCCTGCCTCACCGAGTGAGAGATCACCGTCATGAGCATGAGCTTGAGTTGGACATGGCTAAGGCTTATGTATGCGATGAGTGCCAACAGAAAGGGCAAAACTGGGTCTTCTCTTGCAAGCAGTGCAACTTCGATCTCCATCCAACCTGTGCGCAAGAAAGTACTGATGTAAACATCTGAGATATTTATACTTCAAATATACTGACAACAATGATGTATGCGTTTATGTATATTGTGTCCAACAGATCTAGTGCTAATGTGGCACTGGAAAAAAAAAACT]
consensusID : consensus_5905#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 739 fasta sequence
[GAATATGTCATAA-GTGCAGATGGCATAAAGGTGCAGCACAACAGTTTTTTTGGATACTATGATCCTTGAAAGGAAGCATGGACCAACAAACTTAATGTGTAACATGCACAAGCGGAAATTGCTTTGAATTCCTCATCCCCATCAGACAATTGGACTGTACTTTGGAGCACACTGGTGCCCACCTTGCCGTGCCTTCACTAAACAACTCAGGGAGGCGTACGATGAGCTGAAAGCCTTGAGACCTGGGAATTTCCAGGTCATATTCATTTCCATGGACCGCAATGAGGAAGAATTCCAAGCAAGCCTGAGTGCAATGCCATGGTTTGCTATCCCCTATTCTGACACAACTGTGCAAGAACTCAGTAGAATCTTCACTATCAAAGGCATCCCAACACTCTTGATACTTGGACCAGATGGTAAAGTGTTCAAAACAGACGGAAGGAGAATAATTTCAAAATATGGTGCAATGGCATTCCCTTTTACAGAATCAAGAGCTTATGAGTTGGAAGAAGTTCTCAAAAAGGAAAGGGACAGCCTGCCTCACCGAGTGAGAGATCACCGTCATGAGCATGAGCTTGAGTTGGACATGGCTAAGGCTTATGTATGCGATGAGTGCCAACAGAAAGGGCAAAACTGGGTCTTCTCTTGCAAGCAGTGCAACTTCGATCTCCATCCAACCTGTGCGCAAGAAAGTACTGATGTAAACATCTGAGATATTTATACTTCAAATATACTGACA]
[-] EMBL CB632413 [GAATATGTCATAA GTGCAGATGGCATAAAGGTGCAGCACAACAGTTTTTTTGGATACTATGATCCTTGAAAGGAAGCATGGACCAACAAACTTAATGTGTAACATGCACAAGCGGAAATTGCTTTGAATTCCTCATCCCCATCAGACAATTGGACTGTACTTTGGAGCACACTGGTGCCCACCTTGCCGTGCCTTCACTAAACAACTCAGGGAGGCGTACGATGAGCTGAAAGCCTTGAGACCTGGGAATTTCCAGGTCATATTCATTTCCATGGACCGCAATGAGGAAGAATTCCAAGCAAGCCTGAGTGCAATGCCATGGTTTGCTATCCCCTATTCTGACACAACTGTGCAAGAACTCAGTAGAATCTTCACTATCAAAGGCATCCCAACACTCTTGATACTTGGACCAGATGGTAAAGTGTTCAAAACAGACGGAAGGAGAATAATTTCAAAATATGGTGCAATGGCATTCCCTTTTACAGAATCAAGAGCTTATGAGTTGGAAGAAGTTCTCAAAAAGGAAAGGGACAGCCTGCCTCACCGAGTGAGAGATCACCGTCATGAGCATGAGCTTGAGTTGGACATGGCTAAGGCTTATGTATGCGATGAGTGCCAACAGAAAGGGCAAAACTGGGTCTTCTCTTGCAAGCAGTGCAACTTCGATCTCCATCCAACCTGTGCGCAAGAAAGTACTGATGTAAACATCTGAGATATTTATACTTCAAATATACTGACA]
[-] EMBL CB632412 [ CATAAGGTGCAGATGGCATAAAGGTGCAGCGCAACAGTTTTTTTGGATACTATGATCCTTGAAAGGAAGCATGGACCAACAAACTTAATGTGTAACATGCACAAGCGGAAATTGCTTTGAATTCCTCATCCCCATCAGACAATTGGACTGTACTTTGGAGCACACTGGTGCCCACCTTGCCGTGCCTTCACTAAACAACTCAGGGAGGCGTACGATGAGCTGAAAGCCTTGAGACCTGGGAATTTCCAGGTCATATTCATTTCCATGGACCGCAATGAGGAAGAATTCCAAGCAAGCCTGAGTGCAATGCCATGGTTTGCTATCCCCTATTCTGACACAACTGTGCAAGAACTCAGTAGAATCTTCACTATCAAAGGCATCCCAACACTCTTGATACTTGGACCAGATGGTAAAGTGTTCAAAACAGACGGAAGGAGAATAATTTCAAAATATGGTGCAATGGCATTCCCTTTTACAGAATCAAGAGCTTATGAGTTGGAAGAAGTTCTCAAAAAGGAAAGGGACAGCCTGCCTCACCGAGTGAGAGATCACCGTCATGAGCATGAGCTTGAGTTGGACATGGCTAAGGCTTATGTATGCGATGAGTGCCAACAGAAAGGGCAAAACTGGGGCTTCTCTTGCAAGCAGTGCAACTTCGATCTCCATCCAACCTGTGCGCAAGAAAGTACTGATGTACTCTACGGGGATATTTATACTTCAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5905#0 ACATGGGAGAGACGGCAGAAGGTGTTGAAGCAGGCGAGAAATATGTGAGCATACCACAGT 60
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 TGGCTGGAGTTGGAACTCTTCTCTCCAATGGAGGAAAGGTGAGACTGATCATAGTATTTG 120
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 ATAGCCCTGATCTTCAGCTTAGCTTGTGTTCTGTTGTTCTGAATAAATATTCTCTAATTT 180
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 TCTTGTGGATATACTATTTGGCATCCAAGCATGATTTAAATATAGCAAATAAACATCAAT 240
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 ACATAGAAGTACTCCAGGGATTGGCTGTTCTGTTTCATGATCAAATCTGAGATCTCTGCT 300
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 TAAGTATAAAACTGCTAACATGGCATAGTTTTTCCAAATTAGTATCAGTATTAAAACTTC 360
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 ACACTATGCAGTACTGCAAAAATATGTTTGCTTTTGGTTTCAGAAAGAGAAGAATTAGTT 420
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 GTCTCCTAAATTTGTCATTGTGTATCAAAAACAGGAAATACCTCTGTCGTCCATTGAAGG 480
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 GAAGAGAATCTGCCTCTTCTTCTCGGCTCACTGGTGCAGGCCATGCAGGAACTTTACCCC 540
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 AAAGTTGCTCCAAATCTACAGGAAACTCAGGAATACTTGCAAGAATATGGAGATAATCTT 600
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 CATATCACTTGACCGCGACGAGATCAGCTTCTTGGACTACTTCAAAGGCATGCCATGGCT 660
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 TGCCTTGCCTTTTGACACTGGCCTAAGGCAAAAATTATGTGTGCAATTTGACATTGAGCA 720
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 TATCCCAGCATTGATTCCTCTGTCAACAACGCTATCTCATGGATTTCGAGTCGAAGAGGA 780
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 TGCAGTGAAGCTGGTTGAGGAGTATGGAGTAGATGCCTACCCCTTTGGTGCAAAGAGGAG 840
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 AAGTGAACTGGAGGGTATGGATGATGCCAGGAGACAAGGAGGTAATCTTCTGCAACTTCT 900
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 TGGATGCAAGGAAAGAGAATATGTCATAAGTGCAGATGGCATAAAGGTGACCAAAATCAT 960
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 AACCTATAAATTCGTAATTTGCTTGTTTATGCATTGCGTATGTTTAGGTAAAATATAAGG 1020
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 CTAGATGATGCAGACTTGATAGATGGTGCCAGTATATAGATACATGCTATGACAGTAACC 1080
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 TGCTAGCAAGAACCCCAACAGATTGCACTAATACAAGCTAATATATGAGCACAGTCATCA 1140
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 AAATCTTAATGATTGTATAACCATTAAACTGAGTAAACTGGCAATGCTAGATTAATAATA 1200
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 GTAATCTAGTCACAAAACAATGAAACCAACAAAATATGAATTAGGTGAAGCTTTATGAAG 1260
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 CTACATGAGATAAAAAATAAAGGAATATAGC-TACAGGTGCAGCACAACAGTTTTTTTGG 1319
consensus_5905#1 -------GAATATGTCATAAGTGCAGATGGCATAAAGGTGCAGCACAACAGTTTTTTTGG 53
*** **** * * ** ** ** *************************
consensus_5905#0 ATACTATGATCCTTGAAAGGAAGCATGGACCAACAAACTTAATGTGTAACATGCACAAGC 1379
consensus_5905#1 ATACTATGATCCTTGAAAGGAAGCATGGACCAACAAACTTAATGTGTAACATGCACAAGC 113
************************************************************
consensus_5905#0 GGAAATTGCTTTGAATTCCTCATCCCCATCAGGTACAATTGGCTTTGCTTTACCATTTCA 1439
consensus_5905#1 GGAAATTGCTTTGAATTCCTCATCCCCATCAG---------------------------- 145
********************************
consensus_5905#0 CCTTCTATTATAACTCTTTCAGACTCCTATATCTGACCTTAATGGCAAGACAATTGGACT 1499
consensus_5905#1 -------------------------------------------------ACAATTGGACT 156
***********
consensus_5905#0 GTACTTTGGAGCACACTGGTGCCCACCTTGCCGTGCCTTCACTAAACAACTCAGGGAGGC 1559
consensus_5905#1 GTACTTTGGAGCACACTGGTGCCCACCTTGCCGTGCCTTCACTAAACAACTCAGGGAGGC 216
************************************************************
consensus_5905#0 GTACGATGAGCTGAAAGCCTTGAGACCTGGGAATTTCCAGGTCATATTCATTTCCATGGA 1619
consensus_5905#1 GTACGATGAGCTGAAAGCCTTGAGACCTGGGAATTTCCAGGTCATATTCATTTCCATGGA 276
************************************************************
consensus_5905#0 CCGCAATGAGGAAGAATTCCAAGCAAGCCTGAGTGCAATGCCATGGTTTGCTATCCCCTA 1679
consensus_5905#1 CCGCAATGAGGAAGAATTCCAAGCAAGCCTGAGTGCAATGCCATGGTTTGCTATCCCCTA 336
************************************************************
consensus_5905#0 TTCTGACACAACTGTGCAAGAACTCAGTAGAATCTTCACTATCAAAGGCATCCCAACACT 1739
consensus_5905#1 TTCTGACACAACTGTGCAAGAACTCAGTAGAATCTTCACTATCAAAGGCATCCCAACACT 396
************************************************************
consensus_5905#0 CTTGATACTTGGACCAGATGGTAAAGTGTTCAAAACAGACGGAAGGAGAATAATTTCAAA 1799
consensus_5905#1 CTTGATACTTGGACCAGATGGTAAAGTGTTCAAAACAGACGGAAGGAGAATAATTTCAAA 456
************************************************************
consensus_5905#0 ATATGGTGCAATGGCATTCCCTTTTACAGAATCAAGAGCTTATGAGTTGGAAGAAGTTCT 1859
consensus_5905#1 ATATGGTGCAATGGCATTCCCTTTTACAGAATCAAGAGCTTATGAGTTGGAAGAAGTTCT 516
************************************************************
consensus_5905#0 CAAAAAGGAAAGGGACAGCCTGCCTCACCGAGTGAGAGATCACCGTCATGAGCATGAGCT 1919
consensus_5905#1 CAAAAAGGAAAGGGACAGCCTGCCTCACCGAGTGAGAGATCACCGTCATGAGCATGAGCT 576
************************************************************
consensus_5905#0 TGAGTTGGACATGGCTAAGGCTTATGTATGCGATGAGTGCCAACAGAAAGGGCAAAACTG 1979
consensus_5905#1 TGAGTTGGACATGGCTAAGGCTTATGTATGCGATGAGTGCCAACAGAAAGGGCAAAACTG 636
************************************************************
consensus_5905#0 GGTCTTCTCTTGCAAGCAGTGCAACTTCGATCTCCATCCAACCTGTGCGCAAGAAAGTAC 2039
consensus_5905#1 GGTCTTCTCTTGCAAGCAGTGCAACTTCGATCTCCATCCAACCTGTGCGCAAGAAAGTAC 696
************************************************************
consensus_5905#0 TGATGTAAACATCTGAGATATTTATACTTCAAATATACTGACAACAATGATGTATGCGTT 2099
consensus_5905#1 TGATGTAAACATCTGAGATATTTATACTTCAAATATACTGACA----------------- 739
*******************************************
consensus_5905#0 TATGTATATTGTGTCCAACAGATCTAGTGCTAATGTGGCACTGGAAAAAAAAAACT 2155
consensus_5905#1 --------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||