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Oryza sativa
cluster # 5910 cluster # 5910       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5910#0 length = 1472 sequences # 3  

consensusID : consensus_5910#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1472
fasta sequence
                              [GGAATCCGATCGAGCGTTTCCCGAGCAGTAGCGACAGAAAATGGCTGTGACGATGGACAACGTCATCAGGTTCATGTTCATCCTTAGCGTCGTCTACGGCGCCGCATATGCCAAAAAGTCTGAGGCCAAGGTCGCTAGTGCTCCTGGCCTAGCAGCGGCGGTCAACACGGTCTTCGACATCACCGAGCTCGGCGCCGTCGCTGACGGCAAGACAGATAGCACCAAGGCGGTCCAGGATGCATGGGACGCGGCGTGCGGGTTGGCCGGGTCACAGAAGGTGGTGATCCCCAAGGGAGAATTCATGACCGGGCCCCTCAAC-TTCAGCGGGCCGTGCAAGGGCTACGTCACCGTCCAGATCGATGGCACCATGTTTGGCTCCAACGACATCCCCAAGTACAACAAGGGCAACTGGATCGAGATCCTCCACATCGACAACGTCCTCGTCAACGGCTCCGGCACCCTCGACGGCCAGGGCGCCGCCGTCTGGAAAGACGAATGCAAGATCTTGCCCAACACGTTGGTGCTGGACTACGTGAAGAACGGGACCGTGTCGGGGCTCAAGCTGGTGAACGCCAAGTTCTTCCACATCAACGTGTACATGTCCAAGGGTGTGACGATCAAGAACGTGACCATCACCGCGGTGGCGAACAGCCCGAACACGGACGGTGTCCACATCGGCGACTCGTCGGAGATCAGCGTGTCGGACGCGACCATCGCGACGGGGGACGACTGCATCTCCGTGGGGCCGGGGAGCTCGCGGATCAGCATCCAGGGGATCACCTGTGGGCCCGGGCAGGGGATCAGCGTGGGGTGCCTGGGCAGGTTCAAGGACGAGAAGGACGTGACGGACGTGACGGTCCG-CGACTGCGTGCTCCGCAACACCTCCAACGGCGTCCGGATCAGGTCGTATGAGGACGTGCTGTCCCCGATCACGGCGTCCAGGCTAACGTTCGAGAACATTCGGATGGACGGGGTGGCCAACCCGGTGATCGTGGACCAGAAGTACTGCCCCGAGAAGGACTGCCCCGAGAAGAAGGGGAGCAAGACGGTGACCATCAAGAACGTGACGTTCCGCAACATCACCGGCACCTCCAACACGCCGGAGGCCGTCAGCCTACTCTGCTCTGACCAGCTGCCCTGCAGCGGCATGGAGCTGCTCGACGTCAACCTGAAGTACGACGGCAAGGACAACAAGACCATGGCCGTCTGCACCAACGCCAAGGGCATCTCCAAGGGCTCGCTCCAGGCCCTCGCTTGCCTCTGATCTCGATCCATCCATCGTCGACCGGCGTTATATCATCTCTCTATCTATCGTCGTCTGATATATGTATAATTCGCTTATATAGTATGTACTAGAAACACAACGGGGCTTTGCCGAGTGTACATGCGCCAGCCCAATTGGGCCAAATAGAGGTATTACCTGTTACATTTATATGAACAGGAGTGAATGGCAAAAAATTAAAAATCAAAAA]

[+] EMBL AK069989             [GGAATCCGATCGAGCGTTTCCCGAGCAGTAGCGACAGAAAATGGCTGTGACGATGGACAACGTCATCAGGTTCATGTTCATCCTTAGCGTCGTCTACGGCGCCGCATATGCCAAAAAGTCTGAGGCCAAGGTCGCTAGTGCTCCTGGCCTAGCAGCGGCGGTCAACACGGTCTTCGACATCACCGAGCTCGGCGCCGTCGCTGACGGCAAGACAGATAGCACCAAGGCGGTCCAGGATGCATGGGACGCGGCGTGCGGGTTGGCCGGGTCACAGAAGGTGGTGATCCCCAAGGGAGAATTCATGACCGGGCCCCTCAAC TTCAGCGGGCCGTGCAAGGGCTACGTCACCGTCCAGATCGATGGCACCATGTTTGGCTCCAACGACATCCCCAAGTACAACAAGGGCAACTGGATCGAGATCCTCCACATCGACAACGTCCTCGTCAACGGCTCCGGCACCCTCGACGGCCAGGGCGCCGCCGTCTGGAAAGACGAATGCAAGATCTTGCCCAACACGTTGGTGCTGGACTACGTGAAGAACGGGACCGTGTCGGGGCTCAAGCTGGTGAACGCCAAGTTCTTCCACATCAACGTGTACATGTCCAAGGGTGTGACGATCAAGAACGTGACCATCACCGCGGTGGCGAACAGCCCGAACACGGACGGTGTCCACATCGGCGACTCGTCGGAGATCAGCGTGTCGGACGCGACCATCGCGACGGGGGACGACTGCATCTCCGTGGGGCCGGGGAGCTCGCGGATCAGCATCCAGGGGATCACCTGTGGGCCCGGGCAGGGGATCAGCGTGGGGTGCCTGGGCAGGTTCAAGGACGAGAAGGACGTGACGGACGTGACGGTCCG CGACTGCGTGCTCCGCAACACCTCCAACGGCGTCCGGATCAGGTCGTATGAGGACGTGCTGTCCCCGATCACGGCGTCCAGGCTAACGTTCGAGAACATTCGGATGGACGGGGTGGCCAACCCGGTGATCGTGGACCAGAAGTACTGCCCCGAGAAGGACTGCCCCGAGAAGAAGGGGAGCAAGACGGTGACCATCAAGAACGTGACGTTCCGCAACATCACCGGCACCTCCAACACGCCGGAGGCCGTCAGCCTACTCTGCTCTGACCAGCTGCCCTGCAGCGGCATGGAGCTGCTCGACGTCAACCTGAAGTACGACGGCAAGGACAACAAGACCATGGCCGTCTGCACCAACGCCAAGGGCATCTCCAAGGGCTCGCTCCAGGCCCTCGCTTGCCTCTGATCTCGATCCATCCATCGTCGACCGGCGTTATATCATCTCTCTATCTATCGTCGTCTGATATATGTATAATTCGCTTATATAGTATGTACTAGAAACACAACGGGGCTTTGCCGAGTGTACATGCGCCAGCCCAATTGGGCCAAATAGAGGTATTACCTGTTACATTTATATGAACA                                ]
[+] EMBL C72551               [              CGTTTCCCGAGCAGTAGCGACAGAAAATGGCTGTGACGATGGACAACGTCATCAGGTTCATGTTCATCCTTAGCGTCGTCTACGGCGCCGCATATGCCAAAAAGTCTGAGGCCAAGGTCGCTAGTGCTCCTGGCCTAGCAGCGGCGGTCAACACGGTCTTCGACATCACCGAGCTCGGCGCCGTCGCTGACGCAAAGACAGATAGCACCAAGGCGGTCCAGGATGCATGGGACGCGGCGTGCGGGTTGGCCGGGTCACAGAAGGTGGTGATCCCCAAGGGAGAATTCATGACCGGGCCCCTCAACTTTCAGCGGGCCGTGCAAGGGTTACGTCACCGTCCAGATCGNTGGCACCATGTTTNGTTCCAACG CAT CCCAAGTACAACAAGGG AACTTGATCCGGATCCTCCANATTG CAAAGTCCTTGT AAAGGTTTCGnaact                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU094002             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GGGCAGGTTCAAGGACGAGAAGNACNTGACGGACGTGACGGTCCGCCGACTGCGTG TCCGCAACACTTCCAACGGCGTCCGGATCAAGTCGTATGAGGACGTGCTGTCCCCGATCACGGCGTCCAGGCTAACGTTCGAGAACATTCGGATGGACGGGGTGGCCAACCCGGTGATCGTGGACCAGAAGTACTGCCCCGAGAAGGACTGCCCCGAGAAGAAGGGGAGCAAGACGGTGACCATCAAGAACGTGACGTTCCGCAACATCACCGGCACCTCCAACACGCCGGAGGCCGTCAGCCTACTCTGCTCTGACCAGCTGCCCTGCAGCGGCATGGAGCTGCTCGACGTCAACCTGAAGTACGACGGCAAGGACAACAAGACCATGGCCGTCTGCACCAACGCCAAGGGCATCTCCAAGGGCTCGCTCCAGGCCCTCGCTTGCCTCTGATCTCGATCCATCCATCGTCGACCGGCGTTATATCATCTCTCTATCTATCGTCGTCTGATATATGTATAATTCGCTTATATAGTATGTACTAGAAACACAACGGGGCTTTGCCGAGTGTACATGCGCCAGCCCAATTGGGCCAAATAGAGGTATTACCTGTTACATTTATATGAACAGGAGTGAATGGCAAAAAATTAAAAATCAAAAA]


>consensus_5910#0 GGAATCCGATCGAGCGTTTCCCGAGCAGTAGCGACAGAAAATGGCTGTGACGATGGACAA CGTCATCAGGTTCATGTTCATCCTTAGCGTCGTCTACGGCGCCGCATATGCCAAAAAGTC TGAGGCCAAGGTCGCTAGTGCTCCTGGCCTAGCAGCGGCGGTCAACACGGTCTTCGACAT CACCGAGCTCGGCGCCGTCGCTGACGGCAAGACAGATAGCACCAAGGCGGTCCAGGATGC ATGGGACGCGGCGTGCGGGTTGGCCGGGTCACAGAAGGTGGTGATCCCCAAGGGAGAATT CATGACCGGGCCCCTCAACTTCAGCGGGCCGTGCAAGGGCTACGTCACCGTCCAGATCGA TGGCACCATGTTTGGCTCCAACGACATCCCCAAGTACAACAAGGGCAACTGGATCGAGAT CCTCCACATCGACAACGTCCTCGTCAACGGCTCCGGCACCCTCGACGGCCAGGGCGCCGC CGTCTGGAAAGACGAATGCAAGATCTTGCCCAACACGTTGGTGCTGGACTACGTGAAGAA CGGGACCGTGTCGGGGCTCAAGCTGGTGAACGCCAAGTTCTTCCACATCAACGTGTACAT GTCCAAGGGTGTGACGATCAAGAACGTGACCATCACCGCGGTGGCGAACAGCCCGAACAC GGACGGTGTCCACATCGGCGACTCGTCGGAGATCAGCGTGTCGGACGCGACCATCGCGAC GGGGGACGACTGCATCTCCGTGGGGCCGGGGAGCTCGCGGATCAGCATCCAGGGGATCAC CTGTGGGCCCGGGCAGGGGATCAGCGTGGGGTGCCTGGGCAGGTTCAAGGACGAGAAGGA CGTGACGGACGTGACGGTCCGCGACTGCGTGCTCCGCAACACCTCCAACGGCGTCCGGAT CAGGTCGTATGAGGACGTGCTGTCCCCGATCACGGCGTCCAGGCTAACGTTCGAGAACAT TCGGATGGACGGGGTGGCCAACCCGGTGATCGTGGACCAGAAGTACTGCCCCGAGAAGGA CTGCCCCGAGAAGAAGGGGAGCAAGACGGTGACCATCAAGAACGTGACGTTCCGCAACAT CACCGGCACCTCCAACACGCCGGAGGCCGTCAGCCTACTCTGCTCTGACCAGCTGCCCTG CAGCGGCATGGAGCTGCTCGACGTCAACCTGAAGTACGACGGCAAGGACAACAAGACCAT GGCCGTCTGCACCAACGCCAAGGGCATCTCCAAGGGCTCGCTCCAGGCCCTCGCTTGCCT CTGATCTCGATCCATCCATCGTCGACCGGCGTTATATCATCTCTCTATCTATCGTCGTCT GATATATGTATAATTCGCTTATATAGTATGTACTAGAAACACAACGGGGCTTTGCCGAGT GTACATGCGCCAGCCCAATTGGGCCAAATAGAGGTATTACCTGTTACATTTATATGAACA GGAGTGAATGGCAAAAAATTAAAAATCAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)