cluster # 5913

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Oryza sativa
cluster # 5913 cluster # 5913 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5913#0 length = 756 sequences # 2

consensus_5913#1 length = 403 sequences # 1

consensusID : consensus_5913#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 756
fasta sequence

                              [CCCGCACTTCTCGTCTTCCTCCTCGCCGTCGTCTTCCACAACCACCACCGCGCCGCCGCCTACCAATCCATCCAGACCTTCTCCTCCCCCGCCGATGCACACAAATCGCCGGTGACGTCACGCCGGTGAAGCAGCAGCACTAGGAGAAGGAGGAGCATATGGCCTGTGTACTCCGCCTCGCCTCCCGCTCCCGCTCCCGCTCCGGCCTCCGGCCCACCCTCGCCGCCCCGCGGCCGTCTCCGGTTCCGCCTCCGCCGCCGCGGGTGGGACCCACACCCGTCGCCCCCTCGCCGGCGCCTCTCCGCGGTCTCCTCCTCCCCCTATCCCCGCTCCGCCTCGCTTCCCCTGATGCCTTCTCATCGTCGTCGCCGTCGCCCGCGTGGCTCCTCGACGGCCTAAATTGGCGGCGGGCGGGGATCGGGAGGAGGTGGTTCGCGACCGAGGCGTCCGCGGCGTCNACGGCGGCTGAGCTGGTGGACGTGCCCCTGGCGCAGACCGGGGAAGGCATCGCCGAGTGCGAGCTGCTGCGCTGGTTCGTCACTGAGGGTGATCAAGTAGATGAATTCCAGAGGCTCTGTGAAGTACAGAGTGACAAGGCAACTATCGAAATAACAAGTCGTTTCAAAGGAAAAGTACATCAGATTCACTTTGGTCCTGGTGACATTGTGAAGGTTGGTGAAACTTTACTGAAGATGATGGTGGGCGACAGCCAAACTGTATCTCATGATAGTATAGCTTCATCCACTGATCATTCAC]

[+] EMBL CB640755             [CCCGCACTTCTCGTCTTCCTCCTCGCCGTCGTCTTCCACAACCACCACCGCGCCGCCGCCTACCAATCCATCCAGACCTTCTCCTCCCCCGCCGATGCACACAAATCGCCGGTGACGTCACGCCGGTGAAGCAGCAGCACTAGGAGAAGGAGGAGCATATGGCCTGTGTACTCCGCCTCGCCTCCCGCTCCCGCTCCCGCTCCGGCCTCCGGCCCACCCTCGCCGCCCCGCGGCCGTCTCCGGTTCCGCCTCCGCCGCCGCGGGTGGGACCCACACCCGTCGCCCCCTCGCCGGCGCCTCTCCGCGGTCTCCTCCTCCCCCTATCCCCGCTCCGCCTCGCTTCCCCTGATGCCTTCTCATCGTCGTCGCCGTCGCCCGCGTGGCTCCTCGACGGCCTAAATTGGCGGCGGGCGGGGATCGGGAGGAGGTGGTTCGCGACCGAGGCGTCCGCGGCGTCNACGGCGGCTGAGCTGGTGGACGTGCCCCTGGCGCAGACCGGGGAAGGCATCGCCGAGTGCGAG                                                                                                                                                                                                                                           ]
[+] EMBL CB632481             [                   TCCTCGCCGTCGTCTTCCACAATC TTTCCGCGCCGCCGCCTACCAATCCATCCAGACCTTCTCCTCCCCCGCCGATGCACACAAATCGCCGGTGACGCCACGCCGGTGAAGCAGCAGCACTAGGAGAAGGAGGAGCATATGGCCTGTGTACTCCGCCTCGCCTCCCGCTCCCGCTCCCGCTCCGGCCTCCGGCCCACCCTCGCCGCCCCGCGGCCGTCTCCGGTTCCGCCTCCGCCGCCGCGGGTGGGACCCACCCCCGCCGCCCCCTCGCCGGCGCCTCTCCGCGGTCTCCTCCTCCCCCTATCCCCGCTCCGCCTCGCTTCCCCTGATGCCTTCTCATCGTCGTCGCCGTCGCCCGCGTGGCTCCTCGACGGCCTAAATTGGCGGCGGGCGGGGGTCGGGAGGAGGTGGTTCGCGACCGAGGCGTCCGCGGCGTCGACGGCGGCTGAGCTGGTGGACGTGCCCCTGGCGCAGACCGGGGAAGGCATCGCCGAGTGCGAGCTGCTGCGCTGGTTCGTCACTGAGGGTGATCAAGTAGATGAATTCCAGAGGCTCTGTGAAGTACAGAGTGACAAGGCAACTATCGAAATAACAAGTCGTTTCAAAGGAAAAGTACATCAGATTCACTTTGGTCCTGGTGACATTGTGAAGGTTGGTGAAACTTTACTGAAGATGATGGTGGGCGACAGCCAAACTGTATCTCATGATAGTATAGCTTCATCCACTGATCATTCAC]




>consensus_5913#0
CCCGCACTTCTCGTCTTCCTCCTCGCCGTCGTCTTCCACAACCACCACCGCGCCGCCGCC
TACCAATCCATCCAGACCTTCTCCTCCCCCGCCGATGCACACAAATCGCCGGTGACGTCA
CGCCGGTGAAGCAGCAGCACTAGGAGAAGGAGGAGCATATGGCCTGTGTACTCCGCCTCG
CCTCCCGCTCCCGCTCCCGCTCCGGCCTCCGGCCCACCCTCGCCGCCCCGCGGCCGTCTC
CGGTTCCGCCTCCGCCGCCGCGGGTGGGACCCACACCCGTCGCCCCCTCGCCGGCGCCTC
TCCGCGGTCTCCTCCTCCCCCTATCCCCGCTCCGCCTCGCTTCCCCTGATGCCTTCTCAT
CGTCGTCGCCGTCGCCCGCGTGGCTCCTCGACGGCCTAAATTGGCGGCGGGCGGGGATCG
GGAGGAGGTGGTTCGCGACCGAGGCGTCCGCGGCGTCNACGGCGGCTGAGCTGGTGGACG
TGCCCCTGGCGCAGACCGGGGAAGGCATCGCCGAGTGCGAGCTGCTGCGCTGGTTCGTCA
CTGAGGGTGATCAAGTAGATGAATTCCAGAGGCTCTGTGAAGTACAGAGTGACAAGGCAA
CTATCGAAATAACAAGTCGTTTCAAAGGAAAAGTACATCAGATTCACTTTGGTCCTGGTG
ACATTGTGAAGGTTGGTGAAACTTTACTGAAGATGATGGTGGGCGACAGCCAAACTGTAT
CTCATGATAGTATAGCTTCATCCACTGATCATTCAC

consensusID : consensus_5913#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence

                              [TGCGTCCCCCCTCTGATGGCGGATTTGGATTTTTTTCACACGGTGCAGTGGCGGCGGGCGGGGATCGGGAGGAGGTGGTTCGCGACCGAGGCGTCCGCGGCGTCGACGGCGGCTGAGCTGGTGGACGTGCCCCTGGCGCAGACCGGGGAAGGCATCGCCGAGTGCGAGCTGCTGCGCTGGTTCGTCACTGAGGGTGATCAAGTAGATGAATTCCAGAGGCTCTGTGAAGTACAGAGTGACAAGGCAACTATCGAAATAACAAGTCGTTTCAAAGGAAAAGTACATCAGATTCACTTTGGTCCTGGTGACATTGTGAAGGTTGGTGAAACTTTACTGAAGATGATGGTGGGCGACAGCCAAACTGTATCTCATGATAGTATAGCTTCATCCACTGATCATTCAC]

[+] EMBL CB638906             [TGCGTCCCCCCTCTGATGGCGGATTTGGATTTTTTTCACACGGTGCAGTGGCGGCGGGCGGGGATCGGGAGGAGGTGGTTCGCGACCGAGGCGTCCGCGGCGTCGACGGCGGCTGAGCTGGTGGACGTGCCCCTGGCGCAGACCGGGGAAGGCATCGCCGAGTGCGAGCTGCTGCGCTGGTTCGTCACTGAGGGTGATCAAGTAGATGAATTCCAGAGGCTCTGTGAAGTACAGAGTGACAAGGCAACTATCGAAATAACAAGTCGTTTCAAAGGAAAAGTACATCAGATTCACTTTGGTCCTGGTGACATTGTGAAGGTTGGTGAAACTTTACTGAAGATGATGGTGGGCGACAGCCAAACTGTATCTCATGATAGTATAGCTTCATCCACTGATCATTCAC]




>consensus_5913#1
TGCGTCCCCCCTCTGATGGCGGATTTGGATTTTTTTCACACGGTGCAGTGGCGGCGGGCG
GGGATCGGGAGGAGGTGGTTCGCGACCGAGGCGTCCGCGGCGTCGACGGCGGCTGAGCTG
GTGGACGTGCCCCTGGCGCAGACCGGGGAAGGCATCGCCGAGTGCGAGCTGCTGCGCTGG
TTCGTCACTGAGGGTGATCAAGTAGATGAATTCCAGAGGCTCTGTGAAGTACAGAGTGAC
AAGGCAACTATCGAAATAACAAGTCGTTTCAAAGGAAAAGTACATCAGATTCACTTTGGT
CCTGGTGACATTGTGAAGGTTGGTGAAACTTTACTGAAGATGATGGTGGGCGACAGCCAA
ACTGTATCTCATGATAGTATAGCTTCATCCACTGATCATTCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5913#0      CCCGCACTTCTCGTCTTCCTCCTCGCCGTCGTCTTCCACAACCACCACCGCGCCGCCGCC 60
consensus_5913#1      ------------------------------------------------------------
                                                                                  

consensus_5913#0      TACCAATCCATCCAGACCTTCTCCTCCCCCGCCGATGCACACAAATCGCCGGTGACGTCA 120
consensus_5913#1      ------------------------------------------------------------
                                                                                  

consensus_5913#0      CGCCGGTGAAGCAGCAGCACTAGGAGAAGGAGGAGCATATGGCCTGTGTACTCCGCCTCG 180
consensus_5913#1      ------------------------------------------------------------
                                                                                  

consensus_5913#0      CCTCCCGCTCCCGCTCCCGCTCCGGCCTCCGGCCCACCCTCGCCGCCCCGCGGCCGTCTC 240
consensus_5913#1      ------------------------------------------------------------
                                                                                  

consensus_5913#0      CGGTTCCGCCTCCGCCGCCGCGGGTGGGACCCACACCCGTCGCCCCCTCGCCGGCGCCTC 300
consensus_5913#1      ------------------------------------------------------------
                                                                                  

consensus_5913#0      TCCGCGGTCTCCTCCTCCCCCTATCCCCGCTCCGCCTCGCTTCCCCTGATGCCTTCTCAT 360
consensus_5913#1      -------------------------------------------------TGCGTCCCCCC 11
                                                                       *** * * *  

consensus_5913#0      CGTCGTCGCCGTCGCCCGCGTGGCTCCTCGACGGCCTAAATTGGCGGCGGGCGGGGATCG 420
consensus_5913#1      TCTGATGGCGG--ATTTGGATTTTTTTCACACGGTGCAG--TGGCGGCGGGCGGGGATCG 67
                        *  * ** *      *  *   *     ****   *   *******************

consensus_5913#0      GGAGGAGGTGGTTCGCGACCGAGGCGTCCGCGGCGTCNACGGCGGCTGAGCTGGTGGACG 480
consensus_5913#1      GGAGGAGGTGGTTCGCGACCGAGGCGTCCGCGGCGTCGACGGCGGCTGAGCTGGTGGACG 127
                      ************************************* **********************

consensus_5913#0      TGCCCCTGGCGCAGACCGGGGAAGGCATCGCCGAGTGCGAGCTGCTGCGCTGGTTCGTCA 540
consensus_5913#1      TGCCCCTGGCGCAGACCGGGGAAGGCATCGCCGAGTGCGAGCTGCTGCGCTGGTTCGTCA 187
                      ************************************************************

consensus_5913#0      CTGAGGGTGATCAAGTAGATGAATTCCAGAGGCTCTGTGAAGTACAGAGTGACAAGGCAA 600
consensus_5913#1      CTGAGGGTGATCAAGTAGATGAATTCCAGAGGCTCTGTGAAGTACAGAGTGACAAGGCAA 247
                      ************************************************************

consensus_5913#0      CTATCGAAATAACAAGTCGTTTCAAAGGAAAAGTACATCAGATTCACTTTGGTCCTGGTG 660
consensus_5913#1      CTATCGAAATAACAAGTCGTTTCAAAGGAAAAGTACATCAGATTCACTTTGGTCCTGGTG 307
                      ************************************************************

consensus_5913#0      ACATTGTGAAGGTTGGTGAAACTTTACTGAAGATGATGGTGGGCGACAGCCAAACTGTAT 720
consensus_5913#1      ACATTGTGAAGGTTGGTGAAACTTTACTGAAGATGATGGTGGGCGACAGCCAAACTGTAT 367
                      ************************************************************

consensus_5913#0      CTCATGATAGTATAGCTTCATCCACTGATCATTCAC 756
consensus_5913#1      CTCATGATAGTATAGCTTCATCCACTGATCATTCAC 403
                      ************************************