cluster # 5922

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Oryza sativa
cluster # 5922 cluster # 5922 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5922#0 length = 739 sequences # 1

consensus_5922#1 length = 415 sequences # 2

consensusID : consensus_5922#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 739
fasta sequence

                              [GGTGCCGAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCCATGCCCCGATGAGTAGGAAGGCGCGGCGGCCGTCGCAAAACCCGGGGCGCGAGCCCGGGCGGAACGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAAGCCGAAGAAGAGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTAAGCCGATCCTAATGGACCGGGTTACCCCTGTAGATAGCGCGAACACTCGCGTGCCCCGAAAGGGAATCAGGGTAAGATTTTCCGAACCGTGACGTGATGATTGACCGGACGTTTTGAAATCAAGGAACGCCGTGAGGTCCCTGTATAAATTCTTTTTACTGCTATTGGTATGCAATACTTTATATGGATTAACACATGTAGGTCATTGTCATAAATCGAAATATCACTTCTGATATGGTTTTACGCTCATATTATAAGTTTAGTTTAATAATGATTTAGTCGCTATCTAATAGATTAATGTTTGTTTATGTAATATGTATATATTTAACGTAGGATTGGTAAATACTAGATGATGATTCTAAATATTATATGGTTTGGTCAATCCC]

[+] EMBL AW155388             [GGTGCCGAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCCATGCCCCGATGAGTAGGAAGGCGCGGCGGCCGTCGCAAAACCCGGGGCGCGAGCCCGGGCGGAACGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAAGCCGAAGAAGAGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTAAGCCGATCCTAATGGACCGGGTTACCCCTGTAGATAGCGCGAACACTCGCGTGCCCCGAAAGGGAATCAGGGTAAGATTTTCCGAACCGTGACGTGATGATTGACCGGACGTTTTGAAATCAAGGAACGCCGTGAGGTCCCTGTATAAATTCTTTTTACTGCTATTGGTATGCAATACTTTATATGGATTAACACATGTAGGTCATTGTCATAAATCGAAATATCACTTCTGATATGGTTTTACGCTCATATTATAAGTTTAGTTTAATAATGATTTAGTCGCTATCTAATAGATTAATGTTTGTTTATGTAATATGTATATATTTAACGTAGGATTGGTAAATACTAGATGATGATTCTAAATATTATATGGTTTGGTCAATCCC]




>consensus_5922#0
GGTGCCGAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAG
GACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATC
AACTAGCCCCGAAAATGGATGGCGCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGA
GCGCCATGCCCCGATGAGTAGGAAGGCGCGGCGGCCGTCGCAAAACCCGGGGCGCGAGCC
CGGGCGGAACGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACT
TTGAAAGCCGAAGAAGAGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTAAGCCGAT
CCTAATGGACCGGGTTACCCCTGTAGATAGCGCGAACACTCGCGTGCCCCGAAAGGGAAT
CAGGGTAAGATTTTCCGAACCGTGACGTGATGATTGACCGGACGTTTTGAAATCAAGGAA
CGCCGTGAGGTCCCTGTATAAATTCTTTTTACTGCTATTGGTATGCAATACTTTATATGG
ATTAACACATGTAGGTCATTGTCATAAATCGAAATATCACTTCTGATATGGTTTTACGCT
CATATTATAAGTTTAGTTTAATAATGATTTAGTCGCTATCTAATAGATTAATGTTTGTTT
ATGTAATATGTATATATTTAACGTAGGATTGGTAAATACTAGATGATGATTCTAAATATT
ATATGGTTTGGTCAATCCC

consensusID : consensus_5922#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 415
fasta sequence

                              [TGGTTACGGTGCCGAA-TGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGG-GCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCCATGCCCCGATGAGTAGGAGGGCGCGGCGGCCGAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGNCGCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCCATGCCCCGATGAGTA]

[+] EMBL AU100847             [TGGTTACGGTGCCGAA TGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGG GCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCCATGCCCCGATGAGTAGGAGGGCGCGGCGGCCGAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGNCGCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCCATGCCCCGATGAGTA]
[+] EMBL AU100846             [TGGTTACGGTGCCGAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCCATGCCCCGATGAGTAGGAGGGCGCGGCGGCCGAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCC               ]




>consensus_5922#1
TGGTTACGGTGCCGAATGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGA
CAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGC
CGAATCAACTAGCCCCGAAAATGGATGGGCTGAAGCGCGCGACCCACACCAGGCCATCTG
GGCGAGCGCCATGCCCCGATGAGTAGGAGGGCGCGGCGGCCGAACTGCGCGCTAACCTAG
AACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATC
CGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGNCGC
TGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCCATGCCCCGATGAGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5922#0      -------GGTGCCGAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAG 53
consensus_5922#1      TGGTTACGGTGCCGAA-TGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAG 59
                             ********* *******************************************

consensus_5922#0      ACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTG 113
consensus_5922#1      ACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTG 119
                      ************************************************************

consensus_5922#0      CCGAATCAACTAGCCCCGAAAATGGATGGCGCTGAAGCGCGCGACCCACACCAGGCCATC 173
consensus_5922#1      CCGAATCAACTAGCCCCGAAAATGGATGG-GCTGAAGCGCGCGACCCACACCAGGCCATC 178
                      ***************************** ******************************

consensus_5922#0      TGGGCGAGCGCCATGCCCCGATGAGTAGGAAGGCGCGGCGGCCGTCGCAAAACCCGGGGC 233
consensus_5922#1      TGGGCGAGCGCCATGCCCCGATGAGTAGGAGGGCGCGGCGGCCGA-ACTGCGCGCTAACC 237
                      ****************************** *************   *    * *    *

consensus_5922#0      GCGAGCCCGGGCGGAACGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAAT 293
consensus_5922#1      TAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAG-GACGGTGGT---CATGGAAGT 293
                        ** ***     *   *   **** *  ***     * *   ** *     **  ** *

consensus_5922#0      GAGAACTTTGAAAGCCGAAGAAGAGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTA 353
consensus_5922#1      CGAAATCCGCTAAG--GAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCC---GAA 348
                         **      ***  **    *  * *  *  * **   *    *** ** *    * *

consensus_5922#0      AGCCGATCCTAATGGACCGGGTTACCCCTGT-AGATAGCGCGAACACTCGC-GTGCCCCG 411
consensus_5922#1      AATGGATGNCGCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCCATGCCCCG 408
                      *   ***     ** * ** *  ****     **       *  *   ***  *******

consensus_5922#0      AAAGGGAATCAGGGTAAGATTTTCCGAACCGTGACGTGATGATTGACCGGACGTTTTGAA 471
consensus_5922#1      ATGAGTA----------------------------------------------------- 415
                      *   * *                                                     

consensus_5922#0      ATCAAGGAACGCCGTGAGGTCCCTGTATAAATTCTTTTTACTGCTATTGGTATGCAATAC 531
consensus_5922#1      ------------------------------------------------------------
                                                                                  

consensus_5922#0      TTTATATGGATTAACACATGTAGGTCATTGTCATAAATCGAAATATCACTTCTGATATGG 591
consensus_5922#1      ------------------------------------------------------------
                                                                                  

consensus_5922#0      TTTTACGCTCATATTATAAGTTTAGTTTAATAATGATTTAGTCGCTATCTAATAGATTAA 651
consensus_5922#1      ------------------------------------------------------------
                                                                                  

consensus_5922#0      TGTTTGTTTATGTAATATGTATATATTTAACGTAGGATTGGTAAATACTAGATGATGATT 711
consensus_5922#1      ------------------------------------------------------------
                                                                                  

consensus_5922#0      CTAAATATTATATGGTTTGGTCAATCCC 739
consensus_5922#1      ----------------------------